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ESBL-producing Klebsiella pneumoniae gut colonisation and subsequent health-care associated bacteraemia in preterm newborns: a descriptive cohort with nested case–control study

Published online by Cambridge University Press:  06 October 2025

Moussa Benboubker*
Affiliation:
Human Pathology Biomedicine and Environment Laboratory, Faculty of Medicine and Pharmacy, Sidi Mohammed Ben Abdellah University, Fez, Morocco
Bouchra Oumokhtar
Affiliation:
Human Pathology Biomedicine and Environment Laboratory, Faculty of Medicine and Pharmacy, Sidi Mohammed Ben Abdellah University, Fez, Morocco
Driss Oukachou
Affiliation:
Department of Neonatology and Neonatal Intensive Care, Faculty of Medicine and Pharmacy, Sidi Mohammed Ben Abdellah University, Fez, Morocco
Samira Elfakir
Affiliation:
Department of Epidemiology and Public Health, Faculty of Medicine and Pharmacy, Sidi Mohammed Ben Abdellah University, Fez, Morocco
Salim Belchkar
Affiliation:
Epidemiology and Health Science Research Laboratory, Faculty of Medicine and Pharmacy, Sidi Mohammed Ben Abdellah University, Fez, Morocco
Manal Rossi
Affiliation:
Human Pathology Biomedicine and Environment Laboratory, Faculty of Medicine and Pharmacy, Sidi Mohammed Ben Abdellah University, Fez, Morocco
Abdelhamid Massik
Affiliation:
Biomedical and Translational Research Laboratory, Faculty of Medicine and Pharmacy, Sidi Mohamed Ben Abdellah University, Fez, Morocco
Ghita Yahyaoui
Affiliation:
Biomedical and Translational Research Laboratory, Faculty of Medicine and Pharmacy, Sidi Mohamed Ben Abdellah University, Fez, Morocco
Kaoutar Moutaouakkil
Affiliation:
Laboratory of Microbiology and Molecular Biology, Faculty of Medicine and Pharmacy, Sidi Mohammed Ben Abdellah University, Fez, Morocco
Fouzia Hmami
Affiliation:
Human Pathology Biomedicine and Environment Laboratory, Faculty of Medicine and Pharmacy, Sidi Mohammed Ben Abdellah University, Fez, Morocco
*
Corresponding author: Moussa Benboubker; Email: moussa.benboubker@usmba.ac.ma
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Abstract

This descriptive and exploratory observational case series examined intestinal colonisation and subsequent bacteraemia due to ESBL-producing Klebsiella pneumoniae (ESBL-Kp) in preterm neonates in Morocco. Prospective bacteriological cultures and antibiotic susceptibility testing were supported by phenotypic methods, including Brilliance ESBL Agar and the NG-Test CARBA-5 assay, for the rapid detection of ESBL and carbapenemase producers. Molecular analysis using PCR was also undertaken to identify specific resistance genes. A total of 567 rectal swabs were collected from 339 preterm neonates, yielding 293 K. pneumoniae isolates. ESBL-producing strains were identified in 53.6% of the neonates (182/339). Detected resistance genes included blaSHV (26.3%), blaCTX-M-1 (42.8%), blaTEM (30.2%), blaOXA-48 (50.0%), blaNDM(15.3%), and blaVIM (4.9%). Principal risk factors for colonisation were low birth weight (OR 1.69), very preterm birth (OR 6.24), enteral tube feeding (OR 2.02), and prolonged use of third-generation cephalosporins (OR 1.26). Among the neonates studied, 32 (9.4%) developed healthcare-associated bacteraemia, with 56.2% of these cases preceded by intestinal colonisation with ESBL-Kp. Clinically, severe respiratory distress and alveolar haemorrhage were strongly associated with increased mortality (aRR = 29.32 and 4.45, respectively). The findings highlight the clinical importance of early screening to guide infection control and antimicrobial stewardship in neonatal intensive care settings.

Information

Type
Original Paper
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2025. Published by Cambridge University Press
Figure 0

Table 1. Preterm newborns baseline clinical characteristics and logistic regression of ESBL-Kp carriage status

Figure 1

Figure 1. The cumulative incidence curve illustrates the comparison of days of ESBL-Kp colonisation between the groups exposed and not exposed to third-generation cephalosporins. The median differs for both groups at the onset of antibiotic therapy.

Figure 2

Figure 2. The cumulative incidence curve illustrates the comparison of days of ESBL-Kp colonisation between the groups exposed and not exposed to carbapenems. The median differs for both groups at the onset of antibiotic therapy.

Figure 3

Table 2. Resistance patterns and genetic profile of ESBL-Kp isolates from Blood culture and intestinal colonisation

Figure 4

Table 3. Clinical characteristics, serum markers, and complications of preterm infants with HABs ESBL-Kp stratified by Colonisation status

Figure 5

Table 4. Survival with HABs, stratified by prematurity categories and clinical complications

Figure 6

Figure 3. Kaplan–Meier survival estimates among preterm neonates by ESBL-Kp colonisation status. The median survival time appears to be approximately the same for both groups.

Figure 7

Figure 4. Kaplan–Meier survival estimates among preterm neonates with and without ESBL-Kp HABs.

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