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Genetic analysis of environmental variation

Published online by Cambridge University Press:  23 March 2011

WILLIAM G. HILL*
Affiliation:
Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, UK
HAN A. MULDER
Affiliation:
Animal Breeding and Genomics Centre, Wageningen UR Livestock Research, PO Box 65, 8200 AB Lelystad, The Netherlands
*
*Corresponding author: Tel: +44(0)131 650 5705. Fax: +44(0)131 650 6564. e-mail: w.g.hill@ed.ac.uk
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Summary

Environmental variation (VE) in a quantitative trait – variation in phenotype that cannot be explained by genetic variation or identifiable genetic differences – can be regarded as being under some degree of genetic control. Such variation may be either between repeated expressions of the same trait within individuals (e.g. for bilateral traits), in the phenotype of different individuals, where variation within families may differ, or in both components. We consider alternative models for defining the distribution of phenotypes to include a component due to heterogeneity of VE. We review evidence for the presence of genetic variation in VE and estimates of its magnitude. Typically the heritability of VE is under 10%, but its genetic coefficient of variation is typically 20% or more. We consider experimental designs appropriate for estimating genetic variance in VE and review alternative methods of estimation. We consider the effects of stabilizing and directional selection on VE and review both the forces that might be maintaining levels of VE and heritability found in populations. We also evaluate the opportunities for reducing VE in breeding programmes. Although empirical and theoretical studies have increased our understanding of genetic control of environmental variance, many issues remain unresolved.

Information

Type
Research Papers
Copyright
Copyright © Cambridge University Press 2011
Figure 0

Table 1. Expectation of environmental effect and environmental variance with additive models on variance and standard deviation, exponential and reaction norm models on variance (modified from Walsh & Lynch, 2010)

Figure 1

Table 2. Conversion of breeding values (Av) and its genetic variance of (\sigma _{A_{v} }^{\setnum{2}} ) from standard deviation, exponential and reaction norm models to the additive model (based on Mulder et al., 2007)

Figure 2

Table 3. Published estimates of heritability (h_{\rm v}^{\setnum{2}} \equals \sigma _{A_{{\rm v}} }^{\setnum{2}} \sol \lpar 2\sigma _{\rm P}^{\setnum{4}} \plus 3\sigma _{A_{{\rm v}} }^{\setnum{2}} \rpar , genetic coefficients of variation ({\rm GCV}_{\rm E} \equals \sigma _{A_{{\rm v}} } \sol \sigma _{\rm E}^{\setnum{2}} ) and genetic correlation (r_{A_{{{\rm mv}}} } ) between additive genetic effects for mean and environmental variance. (– no estimate published)

Figure 3

Table 4. Approximate accuracy rA of predicted breeding value \hats{A}_{{\rm v}} for VE using family information