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Frequency, dynamics, and duration of faecal shedding in SARS-CoV-2-infected individuals, a scoping review

Published online by Cambridge University Press:  24 March 2026

Susan Abunijela
Affiliation:
Infectious Disease Epidemiology, Robert Koch-Institut, Germany
Timo Greiner
Affiliation:
Infectious Disease Epidemiology, Robert Koch-Institut, Germany
Walter Haas
Affiliation:
Infectious Disease Epidemiology, Robert Koch-Institut, Germany
Romy Kerber
Affiliation:
Infectious Disease Epidemiology, Robert Koch-Institut, Germany
Peter Pütz
Affiliation:
Infectious Disease Epidemiology, Robert Koch-Institut, Germany
Alexander Schattschneider
Affiliation:
Infectious Disease Epidemiology, Robert Koch-Institut, Germany
Jakob Schumacher
Affiliation:
Infectious Disease Epidemiology, Robert Koch-Institut, Germany
Udo Buchholz*
Affiliation:
Infectious Disease Epidemiology, Robert Koch-Institut, Germany
*
Corresponding author: Udo Buchholz; Email: buchholzu@rki.de
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Abstract

To estimate illness incidence or prevalence from wastewater data, modelling approaches may benefit from incorporating faecal shedding parameters. We systematically searched PubMed and a public repository on shedding data and included 33 studies that met at least one of our objectives. Among 32 studies, the proportion of SARS-CoV-2-infected individuals with detectable virus in stool ranged from 18 to 100%, with a pooled estimate of 54% (95% CI: 52–56%). Stratification by four clinical severity categories, ranging from asymptomatic to critically ill, showed no significant differences among categories (p-value = 0.49). The proportion of individuals with detectable SARS-CoV-2 RNA in stool was higher in children (61%) than in adults (53%; p-value = 0.02). In half of the individuals who initially shed the virus in stool, it remained detectable for an estimated 22 days post-symptom onset. Three studies documented viral load kinetics, indicating a peak between days 3 and 9. Twenty-five studies reported maximum shedding durations ranging from 2 to 12 weeks. Our review summarizes the frequency, dynamics, and duration of SARS-CoV-2 shedding in stool and may serve as a valuable foundation for modelling efforts involving faecal shedding indicators.

Information

Type
Review
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2026. Published by Cambridge University Press
Figure 0

Table 1. Summary of the calculation of key parameters

Figure 1

Figure 1. PRISMA flow chart depicting the screening process for filtering suitable primary studies for the review.

Figure 2

Figure 2. Proportion of individuals with SARS-CoV-2 infection (total cases) in whom viral RNA was detected in stool samples (positive cases). Squares represent the effect estimate for each study (the proportion of SARS-CoV-2-infected individuals with faecal shedding of viral RNA), with larger squares indicating larger sample sizes. Note: This figure provides a descriptive summary of detection rates across studies without meta-analytical models. The Exact (Clopper–Pearson) method was used to calculate 95% CIs.

Figure 3

Figure 3. Proportion of patients with detectable SARS-CoV-2 in stool across three categories: all studies, studies only in children (Of these, six targeted only children [19, [21]–25] and three studies included children and adults [20, [26], 27]), and studies in adults (23 of these addressed adults only [7, [28]–49]). The x-axis displays the study reference. The left y-axis, corresponding to the bars, represents the quantity of patients per study, and the right y-axis, corresponding to the red dots, indicates the proportion of SARS-CoV-2-infected individuals testing positive for the virus in stool. Orange bars in the children’s and adults’ panels mark studies that involved both children and adults and contributed stratified data for the respective age category. The pooled proportion is displayed by the horizontal grey line: 54% for all studies (top panel), and 61% and 53% for the children’s and adults’ panels respectively.

Figure 4

Table 2. Proportion of SARS-CoV-2-infected individuals shedding viral RNA in stool by subgroup

Figure 5

Figure 4. Pooled proportion of SARS-CoV-2 RNA-positive stool samples by day since symptom onset across five studies [7, [19], [29], [31], 35]. X-axis shows days after symptom onset; Y-axis shows pooled PR. The observed PR from five studies are displayed as blue markers with distinct shapes. The solid blue line represents the fitted Weibull decay curve to the daily weighted PR computed from pooled data. The shaded blue ribbon depicts the 95% CI derived from 5,000 bootstrap replicates. A vertical dashed line at day 21 marks the end of empirical data; the pale-blue shaded area to the right denotes the extrapolation range.

Figure 6

Table 3. Comparison of Peak SARS-CoV-2 Viral Load Kinetics Over Time and Variants: Insights from Three Studies; SO = symptom onset

Figure 7

Figure 5. Normalized viral load in stool (expressed as a percentage of the maximum value within each data series in stool and upper respiratory tract (URT) samples from individuals infected with SARS-CoV-2, plotted by days after symptom onset. The circles represent stool viral load data derived from three studies [7, [20], 35]. Blue circles correspond to study [7] and reflect the ancestral strain. Pink circles represent data from study [35] and include both ancestral and Alpha variants. Yellow, grey, and orange circles originate from the study [20] and represent different Omicron variants. Green squares show URT viral data for comparison [50]. Solid and dashed grey lines represent non-parametric approximations of faecal and URT viral kinetics respectively. These lines were included for visual comparison only and were not derived from formal statistical fitting. The y-axis presents normalized viral load values on a linear scale.

Figure 8

Figure 6. Maximum duration of SARS-CoV-2 stool shedding reported across the 24 studies.Note: one exceptional study [41] providing positivity rates up to seven follow-up months is not considered here, for more details see the ‘Results’ section.

Figure 9

Table 4. Recommendations for enhancing the quality of future studies on SARS-CoV-2 stool shedding

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