Hyperglycemia is considered a primary risk factor for type 2 diabetes (T2D) and its complications (Chen et al., Reference Chen, Saxena, Mungrue, Lusis and Shalev2008; Mortuza et al., Reference Mortuza, Chen, Feng, Sen and Chakrabarti2013). The fundamental mechanism leading to diabetes is increased metabolic input into cells and induction of oxidative stress. This process occurs via increased formation of reactive oxygen species (ROS; Mortuza et al., Reference Mortuza, Chen, Feng, Sen and Chakrabarti2013), NLRP3 inflammasome activity and apoptosis via mTOR — all pathways in which thioredoxin-interacting protein (TXNIP) plays a major role (Kumar & Mittal, Reference Kumar and Mittal2018). TXNIP is a ubiquitously expressed protein that inhibits the major cellular antioxidant protein thioredoxin and thus regulates redox-dependent signal pathways, mediates oxidative stress, suppresses cell growth and induces cell apoptosis (Chen et al., Reference Chen, Saxena, Mungrue, Lusis and Shalev2008). Upregulated TXNIP protein levels were found in pancreatic islets from diabetic mice (Minn et al., Reference Minn, Hafele and Shalev2005) and have been associated with pancreatic beta-cell apoptosis in a human islet microarray study (Minn et al., Reference Minn, Hafele and Shalev2005). TXNIP upregulation has been demonstrated to contribute to the development of both type 1 diabetes and T2D in mice and human isolated islets (Chen et al., Reference Chen, Saxena, Mungrue, Lusis and Shalev2008; Hui et al., Reference Hui, Andres, Miller, Spann, Potter, Post, Chen, Sachithanantham, Jung, Kim and Davis2008; Khodneva et al., Reference Khodneva, Shalev, Frank, Carson and Safford2016; Yin et al., Reference Yin, Kuo, Chang, Chen and Wang2017). Txnip silencing in oxidative tissues (skeletal muscle and hearts) in a mouse model led to improved insulin sensitivity and glucose tolerance (Hui et al., Reference Hui, Andres, Miller, Spann, Potter, Post, Chen, Sachithanantham, Jung, Kim and Davis2008) and attenuated hyperglycemia-induced pancreatic beta-cell apoptosis (Chen et al., Reference Chen, Saxena, Mungrue, Lusis and Shalev2008). In human studies, downregulation of TXNIP in human islets via administration of calcium channel blockers (Xu et al., Reference Xu, Chen, Jing and Shalev2012), such as the widely used hypertension medication verapamil, was associated with lower levels of fasting blood glucose in diabetic participants (Khodneva et al., Reference Khodneva, Shalev, Frank, Carson and Safford2016; Xu et al., Reference Xu, Chen, Jing and Shalev2012) and significantly reduced incidence of T2D in patients older than 65 years (Yin et al., Reference Yin, Kuo, Chang, Chen and Wang2017).
Several studies have reported that overexpression of TXNIP in diabetic rat retinas was linked to inflammation of retinal cells and development of diabetic retinopathy (Perrone et al., Reference Perrone, Devi, Hosoya, Terasaki and Singh2009; Singh et al., Reference Singh, Devi and Yumnamcha2017). Increased expression of TXNIP may also contribute to endothelial inflammation and progression of diabetes (Perrone et al., Reference Perrone, Devi, Hosoya, Terasaki and Singh2009). Recent studies have shown that TXNIP protein-activated gene expression of intercellular adhesion molecule 1 (ICAM-1) (Wongeakin et al., Reference Wongeakin, Bhattarakosol and Patumraj2014), interleukin 6 (IL-6) and vascular cell adhesion protein 1 (VCAM-1) (Nagai et al., Reference Nagai, Izumi-Nagai, Oike, Koto, Satofuka, Ozawa, Yamashiro, Inoue, Tsubota, Umezawa and Ishida2007) contribute to inflammation and the development of diabetes.
Epigenome-wide association studies (EWAS) of T2D and hemoglobin A1c (HbA1c) have identified a strong association of DNA methylation (DNAm) site cg1969031 on the TXNIP gene, regardless of ethnic, social and environmental differences in study populations (Chambers et al., Reference Chambers, Loh, Lehne, Drong, Kriebel, Motta, Wahl, Elliott, Rota, Scott, Zhang, Tan, Campanella, Chadeau-Hyam, Yengo, Richmond, Adamowicz-Brice, Afzal, Bozaoglu and Kooner2015; Florath et al., Reference Florath, Butterbach, Heiss, Bewerunge-Hudler, Zhang, Schottker and Brenner2016; Kulkarni et al., Reference Kulkarni, Kos, Neary, Dyer, Kent, Goring, Cole, Comuzzie, Almasy, Mahaney, Curran, Blangero and Carless2015; Mathur et al., Reference Mathur, Hui, Huang, Gwinn, So-Armah, Freiberg, Justice, Xu, Marconi and Sun2019; Meeks et al., Reference Meeks, Henneman, Venema, Addo, Bahendeka, Burr, Danquah, Galbete, Mannens, Mockenhaupt, Owusu-Dabo, Rotimi, Schulze, Smeeth, Spranger, Zafarmand, Adeyemo and Agyemang2019; Soriano-Tarraga et al., Reference Soriano-Tarraga, Jimenez-Conde, Giralt-Steinhauer, Mola-Caminal, Vivanco-Hidalgo, Ois, Rodríguez-Campello, Cuadrado-Godia, Sayols-Baixeras, Elosua and Roquer2016; Walaszczyk et al., Reference Walaszczyk, Luijten, Spijkerman, Bonder, Lutgers, Snieder, Wolffenbuttel and van Vliet-Ostaptchouk2018). TXNIP-cg19693031 is located on chromosome 1, base pair position 145441552 (human genome built hg19). Decreased methylation at TXNIP-cg19693031 in peripheral blood was significantly associated with the development of incident T2D: after 8 years of follow-up, the relative risk of developing T2D was 1.09 (p value 1.2 × 10–17) per 1% decrease in methylation for TXNIP-cg19693031 (Chambers et al., Reference Chambers, Loh, Lehne, Drong, Kriebel, Motta, Wahl, Elliott, Rota, Scott, Zhang, Tan, Campanella, Chadeau-Hyam, Yengo, Richmond, Adamowicz-Brice, Afzal, Bozaoglu and Kooner2015). Little is known about how this TXNIP DNAm site affects inflammation in relation to T2D. The present study investigated (1) the epigenetic association of TXNIP-cg19693031 with levels of selected inflammatory biomarkers and (2) whether the epigenetic association of TXNIP-cg19693031 with T2D is influenced by adjusting these inflammatory biomarkers in the model.
Materials and Methods
Study Sample
The Emory Twin Study consists of 283 middle-aged male Caucasian monozygotic (MZ) and dizygotic (DZ) twin pairs from the Vietnam Era Twin Registry (Goldberg et al., Reference Goldberg, Curran, Vitek, Henderson and Boyko2002) who were on active duty in the US military during the Vietnam conflict era (1964−1975; Vaccarino et al., Reference Vaccarino, Lampert, Bremner, Lee, Su, Maisano, Murrah, Jones, Farhan, Nadeem, Ashraf and Goldberg2008). Twins were examined in pairs at the Emory University General Clinical Research Center at baseline visits conducted between 2002 and 2010. Twins were given the same diet the evening before the assessments and instructed to refrain from smoking. All medications were held for approximately 24 h prior to testing. All measurements were performed in the morning after an overnight fast, and both members of each twin pair were examined at the same time. A medical history and a physical exam were obtained from all twins. Venous blood samples were drawn for the collection of plasma and peripheral blood leukocytes (PBL) and stored at −80 °C. Biochemical assays for each twin pair were processed in the same analytical run. Information on zygosity was determined by DNA analysis. A subgroup of 220 twins with sufficient amount of genomic DNA were successfully epityped using the Illumina HumanMethylation450 (450K) Beadchip. The Emory Twin Study was approved by the Emory Institutional Review Board, and all participants signed an informed consent.
Phenotypes
Weight and height were measured and used to calculate body mass index (BMI). Waist circumference was measured in centimeters at the level of the umbilicus. Cigarette smoking status was self-reported and dichotomized into current smokers versus noncurrent smokers (i.e. never or past smokers). As previously described, physical activity was categorized as ‘no physical activity’, ‘moderate physical activity’ and ‘vigorous physical activity’ (Vaccarino et al., Reference Vaccarino, Goldberg, Magruder, Forsberg, Friedman, Litz, Heagerty, Huang, Gleason and Smith2014). Plasma levels of VCAM-1, ICAM-1, interleukin 6 (IL-6), soluble P-selectin, high-sensitivity c-reactive protein (hs-CRP), matrix metalloproteinase-2 (MMP-2), matrix metalloproteinase-9 (MMP-9), soluble RAGE (sRAGE) and fibrinogen were assessed using commercially available ELISA kits from R and D Systems (Minneapolis, Minnesota). Total triglycerides and cholesterol were determined by enzymatic methods (Beckman Coulter Diagnostics, Fullerton, CA). Levels of blood glucose, insulin and HbA1c in fasting plasma were measured on the Beckman CX7 chemistry auto analyzer (Beckman Coulter Diagnostics). Diabetes mellitus was defined as having a fasting glucose level of >126 mg/dl or being treated with antidiabetic medications.
DNA Methylation Profiling and Data Processing
As previously described, bisulfite convert genomic DNA samples from PBLs were whole-genome amplified, enzymatically fragmented and purified. Following standard protocols, samples were then hybridized to the 450K BeadChip, then fluorescently stained, scanned and assessed for fluorescence intensities at each bead site (Huang et al., Reference Huang, Hui, Walker, Uppal, Goldberg, Jones, Vaccarino and Sun2018). Each DNAm site was quantified using probe intensities and beta (β) values, which represent the ratio of fluorescence intensity of the methylated and unmethylated sites (ranging from 0 to 1). Using the detection p-value threshold of .001, two individual samples with a missing rate above 5% were excluded, resulting in 218 eligible twins in the following analyses. We further performed data normalization and batch effects correction using the preprocessSWAN function of the ‘minfi’ package (Aryee et al., Reference Aryee, Jaffe, Corrada-Bravo, Ladd-Acosta, Feinberg, Hansen and Irizarry2014) available in R.
Statistical Analysis
To compare the characteristics of participants with and without diabetes, generalized estimating equations (GEE) were applied to adjust for the relatedness between co-twins with T2D status as dichotomous dependent variable.
To understand the association between DNA methylation at TXNIP-cg19693031 (the DNAm site) and phenotypes, we applied two sets of regression analyses. We first modeled the fixed effects of twin-pair average methylation level at the DNAm site (shared epigenetic association) and individual deviation from the twin-pair average (i.e. the within twin-pair effect, representing the unshared epigenetic association in co-twins; Carlin et al., Reference Carlin, Gurrin, Sterne, Morley and Dwyer2005). The second term also represents an association relating to individual specific factors that vary between co-twins (i.e. different lifestyles; Carlin et al., Reference Carlin, Gurrin, Sterne, Morley and Dwyer2005). We then modeled the twins as individuals, accounting for within-twin correlation, to examine overall epigenetic associations with the outcomes.
For each set of analyses, we fitted 13 linear mixed regression models for twin study for four diabetes-related traits (HbA1c, fasting glucose, insulin and waist circumference) and nine inflammatory biomarkers as continuous dependent variables, respectively. To understand the association between DNA methylation and odds of T2D, we fitted one GEE model for T2D status as dichotomous dependent variable. Age in years, current smoking status and BMI were adjusted in all models as covariates. The linear mixed model contained random effects to address the chip/batch effect and the correlation within co-twins in linear mixed models, and GEE model addressed the correlation within co-twin by fitting exchangeable covariance matrix. DNAm was measured in PBL samples, where varying proportions of leukocyte subtypes and differential methylation in leukocyte subtypes may produce spurious epigenetic associations (Baron et al., Reference Baron, Turbachova, Hellwag, Eckhardt, Berlin, Hoffmuller, Gardina and Olek2006). We therefore adjusted for the proportions of PBL subtypes (B cells, granulocytes, monocytes, NK cells and T cells) in both models using the method developed by Houseman et al (Reference Houseman, Accomando, Koestler, Christensen, Marsit, Nelson, Wiencke and Kelsey2012).
To examine the effects of inflammatory biomarkers on the association between the DNAm site and T2D, we added them stepwise to a GEE model that accounted for correlations within twin pairs. We used stepwise, linear mixed models to examine the effects of inflammatory biomarkers on the associations between the DNAm site and diabetes-related traits (HbA1c, insulin, and glucose).
All analyses were conducted in R studio with R version 3.4.3. The R packages nlme and geepack were used to implement linear mixed effect models and GEE, respectively. To correct for multiple testing, we established a Bonferroni threshold for statistical significance (nominal p value < .004, correcting for 14 tested biomarkers).
Results
Table 1 summarizes the characteristics of 218 twin participants in the present study, including 164 monozygotic and 54 dizygotic twins (108 pairs and 2 singletons) stratified by the status of T2D. The mean age of the T2D group (n = 24) was 56.1 years old, similar to the non-T2D group (n = 194, mean age of 55.5). Compared to the non-T2D group, the T2D group had higher BMI and waist circumference, as well as higher levels of diabetes-related laboratory measures, including HbA1c, fasting glucose and insulin. Participants with T2D had a higher prevalence of coronary heart disease than did participants without T2D (33% versus 16%). A higher level of inflammation biomarkers was observed among patients with T2D, ICAM-1 (904 ng/ml versus 628 ng/ml), VCAM-1 (404 ng/ml versus 318 ng/ml) and MMP-2 (189 ng/ml versus 166ng/ml). As observed in previous studies (Chambers et al., Reference Chambers, Loh, Lehne, Drong, Kriebel, Motta, Wahl, Elliott, Rota, Scott, Zhang, Tan, Campanella, Chadeau-Hyam, Yengo, Richmond, Adamowicz-Brice, Afzal, Bozaoglu and Kooner2015; Florath et al., Reference Florath, Butterbach, Heiss, Bewerunge-Hudler, Zhang, Schottker and Brenner2016; Kulkarni et al., Reference Kulkarni, Kos, Neary, Dyer, Kent, Goring, Cole, Comuzzie, Almasy, Mahaney, Curran, Blangero and Carless2015; Mathur et al., Reference Mathur, Hui, Huang, Gwinn, So-Armah, Freiberg, Justice, Xu, Marconi and Sun2019; Meeks et al., Reference Meeks, Henneman, Venema, Addo, Bahendeka, Burr, Danquah, Galbete, Mannens, Mockenhaupt, Owusu-Dabo, Rotimi, Schulze, Smeeth, Spranger, Zafarmand, Adeyemo and Agyemang2019; Soriano-Tarraga et al., Reference Soriano-Tarraga, Jimenez-Conde, Giralt-Steinhauer, Mola-Caminal, Vivanco-Hidalgo, Ois, Rodríguez-Campello, Cuadrado-Godia, Sayols-Baixeras, Elosua and Roquer2016; Walaszczyk et al., Reference Walaszczyk, Luijten, Spijkerman, Bonder, Lutgers, Snieder, Wolffenbuttel and van Vliet-Ostaptchouk2018), participants with T2D had lower DNAm level at TXNIP-cg19693031 (Table 1).
Characteristics of study participants, stratified by type 2 diabetes status (n = 218)
Note: T2D, type 2 diabetes. Data are shown as mean (SD) for continuous variables and as number of individuals (proportions) for categorical variables. p values are calculated from GEE models with occurrence of diabetes as the dependent variable. Bold type was used for significant p values.
T2D-related traits — including HbA1c, fasting glucose and insulin — were significantly associated with DNAm levels at TXNIP-cg19693031 after correcting for multiple testing and adjusting for age, BMI, current smoking status, proportions of PBL subtypes and technical batch effects (Table 2). We modeled the unshared association between co-twins by implementing the within-pair association; we also examined twins as individuals while accounting for co-twin correlations. Within twin pairs, 0.01 unit (1%) increase of DNAm beta values was associated with 0.0630 unit decrease in HbA1c (p value 9.84 × 10–4), as well as 24% lower prevalence of T2D (OR = 0.761, 95% CI [0.608, 0.953]). In the twin-as-individual analysis (which does not partition shared and unshared associations in co-twins), an 0.01 unit (1%) increase in DNAm beta value was independently associated with 0.05 unit decrease in HbA1c (p value 9.92 × 10–5), as well as 20% lower prevalence of T2D (OR = 0.802, 95% CI [0.708, 0.909]). Among nine tested inflammatory biomarkers, VCAM-1, ICAM-1, MMP-2 and P-selectin were significantly associated with DNAm levels at TXNIP-cg19693031 (Table 2). For both models, increase in DNAm beta value was associated with decrease in ICAM-1, VCAM-1 and MMP-2, while the VCAM-1 had the largest effect size. Within twin pairs, 0.01 unit increase in DNAm beta value was associated with 36.0 ng/ml decrease in VCAM-1 (p value of 2.78 × 10–4). Without partitioning the shared and unshared associations between co-twins (i.e. twin-as-individual analysis), a 1% increase in beta values was independently associated with 26.7 ng/ml decrease in VCAM-1 (p value of 4.33 × 10–7). The decrease in P-selectin was only associated with increase in DNAm in the first model. Since some inflammatory biomarkers have moderately skewed distribution, we also examined the log transformation of the analysis. The results of VCAM-1, ICAM-1 and MMP-2 were consistent (Supplementary Table S1). To further understand the effect of unshared environmental factors on DNA methylation, we repeated the analysis among a subset of monozygotic twins (Table 3) who shared the same genetic profile in addition to other demographic and familial factors. Comparing the results from all twins (Table 2), the significant associations in twin-specific models (i.e. HbA1c, insulin, ICAM-1 and P-selectin) and twins-as-individual models (i.e. HbA1c, insulin, glucose, ICAM-1, VCAM-1, MMP-2 and sRAGE) showed similar effect sizes (Table 3) with overlapping 95% confidence intervals. For instance, within twin pairs, a 0.01 unit increase in DNAm beta value was associated with 36.0 ng/ml decrease in ICAM-1 among all twins (95% CI –20.13, −7.47]) and the effect size was 9.27 ng/ml among monozygotic twins (95% CI [–14.9, −3.64]), while the effect size for twin-as-individual models was 8.02 ng/ml (95% CI [–11.69, −4.35]) and 7.05 ng/ml (95% CI [–10.6, −3.5]) among monozygotic twins. We also observed the same overlaps among the effect sizes of diabetes-relevant traits. Within twin pairs, a 0.01 unit (1%) increase of DNAm beta values was associated with 0.0630 unit decrease in HbA1c (95% CI [–0.1, −0.03]) and the effect size was 0.0843 units among monozygotic twins (95% CI [–0.13, −0.04]), while the effect size for twin-as-individual models was 0.0469 units (95% CI [–0.07, −0.02]) and 0.0568 units (95% CI [–0.08, −0.03]) among monozygotic twins.
Association of methylation at TXNIP-cg19693031 with diabetes-related and inflammatory biomarkers. The associations were examined in twin-specific models using individual deviation from the twin-pair average (within-pair effect) and twins-as-individual models
Note: T2D, type 2 diabetes. * Bonferroni correction for multiple testing was used (p value <.005). Bold type was used for significant p values (<.05 for T2D-relevant traits and <.005 for inflammatory biomarkers). The analysis of each diabetes-related trait and inflammatory biomarker is adjusted for BMI, current smoking status, age and proportions of PBL subtypes (B cells, granulocytes, monocytes, NK cells and T cells). The table is sorted on within-pair comparison-associated p values in each category. The effect size is based on 0.01 unit (1%) difference in DNA methylation.
Association of methylation at TXNIP-cg19693031 with diabetes-related and inflammatory biomarkers among monozygotic twins. The associations were examined in twin-specific models using individual deviation from the twin-pair average (within-pair effect) and twins-as-individual models
Note: T2D, type 2 diabetes. *Bonferroni correction for multiple testing was used (p value < .005). Bold type was used for significant p values (<.05 for T2D-relevant traits and <.005 for inflammatory biomarkers). The analysis each diabetes-related trait and inflammatory biomarker is adjusted for BMI, current smoking status, age and proportions of PBL subtypes (B cells, granulocytes, monocytes, NK cells and T cells). Phenotypes are displayed in the same order as in the Table 2. The effect size is based on 0.01 unit (1%) difference in DNA methylation.
We then examined the effect of inflammatory biomarkers on the association between DNAm at TXNIP-cg19693031 and T2D using twin-specific GEE models for within-pair effects. Treating T2D as the outcome, the basic model included age, BMI, current smoking status and proportions of PBL subtypes as covariates. Each of the four inflammatory biomarkers significantly associated with DNAm at TXNIP-cg19693031(i.e. ICAM-1, VCAM-1, MMP-2 and P-selectin) was added to the basic model separately. The association of DNAm at TXNIP-cg19693031 with T2D was unchanged after adjusting for plasma levels of individual inflammatory biomarkers (Table 4, Figure 1). Both the unshared (within-pair) and overall (twin-as-individual) epigenetic associations remained significant, except in the model adjusting for plasma level of VCAM-1. VCAM-1 was independently associated with T2D (OR = 1.54, 95% CI [1.03, 2.31]), which slightly reduced the within-twin pair association to OR of 0.761 (95% CI [0.616, 1.03], p value .09). The analysis of diabetes-related traits (HbA1c, insulin and glucose) and TXNIP-cg19693031 showed consistent results (Table 4). The overall epigenetic associations of TXNIP-cg19693031 with HbA1c, insulin and glucose were all negative, indicating that lower levels of HbA1c and insulin and glucose were associated with increase in DNA methylation of TXNIP-cg19693031. The overall epigenetic associations of TXNIP-cg19693031 with these three traits remained significant after controlling for levels of inflammatory biomarkers.
Summary of twin-as-individual association of TXNIP-cg19693031 methylation with T2D, HbA1c, insulin and glucose adjusted for levels of individual inflammatory biomarkers
Note: T2D, type 2 diabetes; twin-as-individual, effect of overall measured influences; OR, odds ratio; beta, the coefficient estimates from the models; CI, confidence interval. In the basic model, BMI, current smoking status, age and proportions of PBL subtypes (B cells, granulocytes, monocytes, NK cells and T cells) were included as covariates, with T2D, HbA1c, insulin and glucose treated as the outcome, respectively. The other four models were constructed by adding corresponding inflammatory biomarkers one at a time into the basic model. Odds ratios of diabetes, beta of HbA1c, beta of insulin and beta of glucose are per 1% increase in DNA methylation and per 1 unit of standard deviation increase in inflammatory biomarkers.
Association of TXNIP-cg19693031 methylation with type 2 diabetes (T2D, adjusted for levels of individual inflammatory biomarkers). Odds ratio is represented by a dot; 95% CI is represented by each vertical line; lines that do not cross null effect (dashed line in grey) indicate statistically significant results; within-pair is the effect of nonshared measured influences; twin-as-individual is the effect of overall measured influences. In the basic model, BMI, current smoking status, age and proportions of PBL subtypes (B cells, granulocytes, monocytes, NK cells and T cells) were included as covariates, with T2D treated as the outcome. The other four models were constructed by adding inflammatory biomarkers one at a time into the basic model. Odds ratios for diabetes are per 1% increase in DNA methylation.
Discussion
Epigenetic variations can be influenced by genetic and environmental factors. Previous studies have examined epigenetic modification as a bridge between environmental exposures and human diseases. In the present analysis, we took advantage of a twin study population and a twin-specific statistical model to compare DNA methylation levels both between members of twin pairs and among all individuals in the study population. We used this approach to consider how DNA methylation changes might reflect both unshared and shared environmental or familial factors (Carlin et al., Reference Carlin, Gurrin, Sterne, Morley and Dwyer2005).
This study showed that hypomethylation at TXNIP-cg19693031 is associated with higher odds of T2D and higher plasma levels of four inflammatory biomarkers: VCAM-1, ICAM-1, MMP-2 and P-selectin. Since some inflammatory biomarkers have moderately skewed distribution, we also examined the log transformation of the analysis. The result of VCAM-1, ICAM-1 and MMP-2 were consistent (Supplementary Table S1). The epigenetic associations we found for TXNIP-cg19693031 with T2D and related traits (HbA1c, fasting glucose and insulin) are consistent with previously reported findings (Chambers et al., Reference Chambers, Loh, Lehne, Drong, Kriebel, Motta, Wahl, Elliott, Rota, Scott, Zhang, Tan, Campanella, Chadeau-Hyam, Yengo, Richmond, Adamowicz-Brice, Afzal, Bozaoglu and Kooner2015; Meeks et al., Reference Meeks, Henneman, Venema, Addo, Bahendeka, Burr, Danquah, Galbete, Mannens, Mockenhaupt, Owusu-Dabo, Rotimi, Schulze, Smeeth, Spranger, Zafarmand, Adeyemo and Agyemang2019). Our discovery of epigenetic associations of TXNIP-cg19693031 with inflammatory biomarkers suggests possible epigenetic linkage of TXNIP with endothelial cell activation via VCAM-1, ICAM-1 and P-selectin. We found, however, that levels of these inflammatory biomarkers did little to explain the epigenetic association between TXNIP-cg19693031 and T2D.
TXNIP, as a regulator of the cellular redox state, responds to high concentrations of glucose early in diabetes development. TXNIP transcription is largely induced by glucose via the activation of carbohydrate response element-binding protein (ChREBP), which binds to the TXNIP promotor (Cha-Molstad et al., Reference Cha-Molstad, Saxena, Chen and Shalev2009). Overexpression of TXNIP subsequently upregulates the oxidative stress response causing β-cell apoptosis (Minn et al., Reference Minn, Hafele and Shalev2005). A previous study showed that cg19693031 is located in the 3’UTR of TXNIP, a site associated with glucose import and protein binding; methylation differences at this locus may affect the function of methylation-sensitive transcription regulators (Soriano-Tarraga et al., Reference Soriano-Tarraga, Jimenez-Conde, Giralt-Steinhauer, Mola-Caminal, Vivanco-Hidalgo, Ois, Rodríguez-Campello, Cuadrado-Godia, Sayols-Baixeras, Elosua and Roquer2016). This is consistent with the association between T2D and hypomethylation at TXNIP-cg19693031 found in our study.
TXNIP also plays significant roles in inflammatory responses (L. Li et al., Reference Li, Ismael, Nasoohi, Sakata, Liao, McDonald and Ishrat2019; Nagai et al., Reference Nagai, Izumi-Nagai, Oike, Koto, Satofuka, Ozawa, Yamashiro, Inoue, Tsubota, Umezawa and Ishida2007; Perrone et al., Reference Perrone, Devi, Hosoya, Terasaki and Singh2009; Szpigel et al., Reference Szpigel, Hainault, Carlier, Venteclef, Batto, Hajduch, Bernard, Ktorza, Gautier, Ferré, Bourron and Foufelle2018; Wongeakin et al., Reference Wongeakin, Bhattarakosol and Patumraj2014). In response to oxidative stress, TXNIP can bind to NOD-like receptor family, pyrin domain containing 3 (NLRP3) and activate the NLRP3-inflammasome to regulate inflammation in peripheral blood mononuclear cells (Szpigel et al., Reference Szpigel, Hainault, Carlier, Venteclef, Batto, Hajduch, Bernard, Ktorza, Gautier, Ferré, Bourron and Foufelle2018) and in the cortex of postmortem human brain samples (L. Li et al., Reference Li, Ismael, Nasoohi, Sakata, Liao, McDonald and Ishrat2019). In addition, TXNIP has been found to induce NF-kB nuclear translocation and increase expression of inflammatory gene COX2 in rat retinal endothelial cells in culture (Perrone et al., Reference Perrone, Devi, Hosoya, Terasaki and Singh2009). NF-kB is also known to be involved in the diabetes-induced retinal expression of ICAM-1 and VEGF (Nagai et al., Reference Nagai, Izumi-Nagai, Oike, Koto, Satofuka, Ozawa, Yamashiro, Inoue, Tsubota, Umezawa and Ishida2007). In the present study, we found that inflammatory biomarkers VCAM-1, ICAM-1, MMP-2, sRAGE and P-selectin were negatively associated with methylation at TXNIP-cg19693031. Some inflammatory biomarkers are related to endothelial dysfunction, which is considered a major cause of diabetes complications. Both ICAM-1 and VCAM-1 are pro-inflammatory markers expressed on endothelial cells and upregulated in peripheral blood during inflammation (X. Li et al., Reference Li, Kover, Heruth, Watkins, Guo, Moore, He, Zang, Clements and Yan2017). MMP-2 belongs to the matrix metalloproteinase family responsible for cellular proliferation, angiogenesis and inflammation (Fingleton, Reference Fingleton2017). P-selectin initiates leukocyte recruitment corresponding to inflammatory action (Varga-Szabo et al., Reference Varga-Szabo, Pleines and Nieswandt2008). Previous studies on TXNIP and inflammatory biomarkers mainly focused on the protein level and RNA level using in vivo experimental design. Our study was the first to identify the epigenetic association between DNA methylation of TXNIP and inflammatory biomarkers.
In addition, we found similar results to previous research that found that T2D patients had a higher level of inflammatory biomarkers, including ICAM-1, VCAM-1 and MMP-2. Serum levels of CRP, IL-6, ICAM-1were positively associated with T2D in previous studies (Gu et al., Reference Gu, Ma, Gu and Brismar2012; Hegazy et al., Reference Hegazy, Awan, Hashem, Al-Ama and Abunaji2020; Vinagre et al., Reference Vinagre, Sánchez-Quesada, Sánchez-Hernández, Santos, Ordoñez-Llanos, De Leiva and Pérez2014). However, the association between MMPs and T2D is not consistent in the literature, showing a mixture of lower or higher concentration of MMPs in T2D patients (Lewandowski et al., Reference Lewandowski, Banach, Bieńkiewicz and Lewiński2011; Sampson et al., Reference Sampson, Davies, Gavrilovic, Sussams, Brown, Astley and Hughes2004), or no significant difference in MMPs concentration between T2D patients and controls (Papazafiropoulou et al., Reference Papazafiropoulou, Perrea, Moyssakis, Kokkinos, Katsilambros and Tentolouris2010). In the present study, MMP-9 showed no association with T2D while MMP-2 was positively associated with T2D. DNAm at TXNIP-cg19693031 is strongly associated with plasma levels of VCAM-1, ICAM-1, MMP-2 and P-selectin; however, we found that adjusting for these inflammatory biomarkers had little effect on the association of TXNIP-cg19693031 with T2D. Thus, the epigenetic association between TXNIP-cg19693031 and T2D is unlikely mediated via inflammatory response.
In the present study, the power and precision of estimates was limited by the small number of T2D cases. Homogeneity of the study cohort — all middle-aged male veterans — limits the generalizability of our findings to other populations with different characteristics. The present study used blood cells for DNAm profiling, which may not accurately represent the epigenetic modifications in other tissues directly related to T2D (e.g. pancreatic cells and adipose tissues) or inflammation (e.g. liver). Although studies of other disease-related tissues would be ideal, they may not be feasible. Large reference panels of epigenetic markers across many different tissues or cell types from the same individuals may help provide evidence for correlated epigenetic profiles across tissues and improve interpretability of blood-based epigenetic studies (Rivera & Ren, Reference Rivera and Ren2013). Finally, our data were cross-sectional and thus could not be used to evaluate epigenetic and phenotypic changes over time, including T2D incidence. The lack of longitudinal data limits our ability to establish causal relationships between DNAm, inflammation and T2D.
Epigenetics is an important molecular mechanism underlying many aspects of disease development and etiology. Initial EWAS of complex diseases, including T2D, have successfully identified strong epigenetic associations with relatively small sample sizes, compared with those required for genome-wide association studies. However, the molecular functions of the epigenetic markers identified by such studies are mostly unknown, limiting their potential contribution to understanding disease mechanisms and their utility for risk assessment and disease prevention. Therefore, it is important to conduct in-depth, follow-up studies of epigenetic markers to understand their biological roles. Our study of TXNIP-cg19693031 identified strong epigenetic associations with several inflammatory biomarkers related to endothelial dysfunction; however, these biomarkers did not explain the association of TXNIP-cg19693031 with T2D. Our study showed that epigenetic markers can be independently associated with different phenotypes. Such an example may inspire more sophisticated evaluation of multiple disease-related traits and risk factors in future epigenetic epidemiologic studies of complex disease, to fully understand the role of epigenetic regulations in human disease.
Supplementary Material
To view supplementary material for this article, please visit https://doi.org/10.1017/thg.2021.42.
Acknowledgments
The USA Department of Veterans Affairs has provided financial support for the development and maintenance of the Vietnam Era Twin (VET) Registry. Numerous organizations have provided invaluable assistance in the conduct of this study, including Department of Defense; National Personnel Records Center, National Archives and Records Administration; the Internal Revenue Service; National Institutes of Health; National Opinion Research Center; the National Research Council, National Academy of Sciences; the Institute for Survey Research, Temple University. Most importantly, the authors gratefully acknowledge the continued cooperation and participation of the members of the VET Registry and their families. Without their contribution, this research would not have been possible.
Financial Support
This work was partly supported by the National Institutes of Health grants NR013520, HL077506, HL68630, AG026255, MH056120, HL088726, NR013520 and MH076955; by the Emory University General Clinical Research Center MO1-RR00039; and by American Heart Association grants 0245115N and 13GRNT17060002.
Conflict of Interest
None.
Author Contributions
Y.X, Z.W., Q.H., V.V. and Y.V.S. contributed to research data and statistical analyses. Y.X. and Y.V.S. wrote the manuscript. All authors reviewed and edited the manuscript.
Ethical Standards
The authors assert that all procedures contributing to this work comply with the ethical standards of the relevant national and institutional committees on human experimentation and with the Helsinki Declaration of 1975, as revised in 2008.
