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A novel platform for modelling and simulation of seedling emergence under various sowing depths and water regimes in direct-seeded rice

Published online by Cambridge University Press:  13 April 2026

Noriko Kanno
Affiliation:
Graduate School of Agricultural and Life Sciences, the University of Tokyo, Tokyo, Japan
Tao Li
Affiliation:
International Rice Research Institute, Laguna, Philippines
Ando Radanielson
Affiliation:
International Rice Research Institute, Laguna, Philippines
Virender Kumar
Affiliation:
International Rice Research Institute, Laguna, Philippines
Yoichiro Kato*
Affiliation:
Graduate School of Agricultural and Life Sciences, the University of Tokyo, Tokyo, Japan
*
Corresponding author: Yoichiro Kato; Email: ykato@g.ecc.u-tokyo.ac.jp
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Abstract

Direct-seeding of rice by sowing dry seeds on dry soils often results in poor seedling emergence due to erratic rainfall. Adjusting the sowing depth to a given rainfall pattern may improve rice emergence. To assess risks of crop failure in direct-seeded rice, we developed a platform for modelling and simulation of rice emergence at different sowing depths. We combined the HYDRUS-1D soil simulation model, which simulates the surface soil’s moisture dynamics, with two rice emergence models recently developed by our research group. The platform used 48 years of daily weather data (1977–2024) for the study site as inputs for the soil model to simulate soil moisture and temperature at designated depths. We then input the simulated values and sowing depths into the emergence models to simulate final emergence and the emergence date. The simulated soil water tension at a depth of 1 cm showed huge interannual variation, reaching 10 MPa in dry years. The simulation showed that relative to a 1-cm sowing depth, depths of 4 and 6 cm greatly reduce the probability of crop failure under rainfed conditions (from 8 % to between 1 % and 2 %). Our novel platform for risk assessment should therefore facilitate the use of direct-seeded rice in suboptimal environments. The platform also fills a knowledge gap for simulation of crop establishment in direct-seeded rice under future climate scenarios.

Information

Type
Crops and Soils Research Paper
Creative Commons
Creative Common License - CCCreative Common License - BYCreative Common License - NC
This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial licence (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original article is properly cited. The written permission of Cambridge University Press or the rights holder(s) must be obtained prior to any commercial use.
Copyright
© The Author(s), 2026. Published by Cambridge University Press
Figure 0

Figure 1. Overview of the model framework.

Figure 1

Figure 2. The observed rice final emergence (ratio of emerged plants per sown seeds) in the field experiments and the predicted final emergence by the final emergence model (n = 29).

Figure 2

Figure 3. Daily means of (a–c) soil water tension and (d–f) soil temperature simulated by HYDRUS-1D over the 48-year period (1977–2024) at (a, d) 1 cm, (b, e) 4 cm and (c, f) 6 cm depths. Years with the upper (high) 10th percentile (1980 as a representative for wet years), median (1991 as a representative) and the lower 10th percentile (1979 as a representative for dry years) values of mean soil water potential at 1 cm depth are highlighted.

Figure 3

Figure 4. Simulated (a–c) final emergence and (d–f) days to emergence over the 48-year period (1977–2024) at (a, d) 1 cm, (b, e) 4 cm and (c, f) 6 cm sowing depths. Years with the upper (high) 10th percentile (1980 as a representative for wet years), median (1991 as a representative) and the lower 10th percentile (1979 as a representative for dry years) values of mean soil water potential at 1 cm depth are highlighted.

Figure 4

Table 1. Rice final emergence (ratio of emerged plants per sown seeds) simulated with the model platform, averaged by sowing depth and sowing month

Figure 5

Table 2. Means and standard errors (in parentheses) of simulated days from sowing to emergence by sowing depth and sowing month

Figure 6

Figure 5. Probability of the simulated final emergence of <0.8 at different sowing depths (1, 4 and 6 cm) for each 5-day sowing window between May 1 and September 27 (150 days, 30 periods) over the 48-year period (1977–2024). MM/DD; Month/Day.

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