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The effect of climate legacies on extinction dynamics: A systematic review

Published online by Cambridge University Press:  17 March 2025

Gregor H. Mathes*
Affiliation:
Paleontological Institute and Museum, University of Zurich, Zurich, Switzerland Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany GeoZentrum Nordbayern, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Erlangen, Germany
Catalina Pimiento
Affiliation:
Paleontological Institute and Museum, University of Zurich, Zurich, Switzerland Department of Biosciences, Swansea University, Swansea, UK Smithsonian Tropical Research Institute, Balboa, Panama
Wolfgang Kiessling
Affiliation:
GeoZentrum Nordbayern, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Erlangen, Germany
Jens-Christian Svenning
Affiliation:
Center for Ecological Dynamics in a Novel Biosphere (ECONOVO), Department of Biology, Aarhus University, Aarhus, Denmark
Manuel J. Steinbauer
Affiliation:
Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany Department of Biological Sciences, University of Bergen, Bergen, Norway
*
Corresponding author: Gregor H. Mathes; Email: gregorhansmathes@gmail.com
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Abstract

One of the main objectives of ecological research is to enhance our understanding of the processes that lead to species extinction. A potentially crucial extinction pattern is the dependence of contemporary biodiversity dynamics on past climates, also known as “climate legacy”. However, the general impact of climate legacy on extinction dynamics is unknown. Here, we conduct a systematic review to summarize the effect of climate legacies on extinction dynamics. We find that few works studying the relationship between extinction dynamics and climate include the potential impact of climate legacies (10%), with even fewer studies reaching beyond merely discussing them (3%). Among the studies that quantified climate legacies, six out of seven reported an improved fit of models to extinction dynamics, with most also describing substantial impacts of legacy effects on extinction risk. These include an increase in extinction risk of up to 40% when temperature changes add to a long-term trend in the same direction, as well as substantial effects on species’ adaptations, population dynamics and juvenile recruitment. Various ecological processes have been identified in the literature as potential ways in which climate legacies could affect the vulnerability of modern ecosystems to anthropogenic climate change, including niche conservatism, physiological thresholds, time lags and cascading effects. Overall, we find high agreement that climate legacy is a crucial process shaping extinction dynamics. Incorporating climate legacies in biodiversity assessments could be a key step toward a better understanding of the ecological consequences arising from climate change.

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Creative Common License - CCCreative Common License - BYCreative Common License - NC
This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial licence (http://creativecommons.org/licenses/by-nc/4.0), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original article is properly cited. The written permission of Cambridge University Press must be obtained prior to any commercial use.
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© The Author(s), 2025. Published by Cambridge University Press
Figure 0

Figure 1. Flow diagram depicting the flow of information through the different phases of the systematic review, mapping the number of records identified, included, excluded and the reasons for exclusions.

Figure 1

Figure 2. Summary of studies including climate legacies. (a) The temporal scale of each study of the systematic literature review on extinction risk and climate change. (b) The temporal trend of the inclusion of climate legacies in studies on extinction risk and climate change. The y-axis shows the probability of climate legacies being included as a function of time. The trend was estimated by a Bayesian logistic regression with non-informative priors. The gray line shows the mean trend, and the yellow shaded areas depicting the 50%, 80% and 95% CIs around this trend. Studies that exclude climate legacies, neither in their methodological framework nor in their discussion, are shown in gray. Studies including climate legacies are shown in yellow. Studies including climate legacies and simultaneously quantifying the effect of these legacies on the extinction parameter are shown in yellow and with a black outline.

Figure 2

Figure 3. The main ecological processes through which climate legacies can affect extinction risk, based on the examined literature (see main text for further discussion). (a) Depicted are two scenarios of climate change over time. Scenario 1 first shows a warming trend from time period T−2 to T−1, followed by a warming trend from T−1 to T0. Contrarily, scenario 2 first shows a cooling trend, followed by the same warming trend as in scenario 1. (b) The effect of the warming trend from T−1 to T0 on taxa is mediated by the long-term climatic context, as taxa are forced toward the edges of their adaptation space under scenario 1 while being closer toward their preferences under scenario 2. (c) Time lags such as migration lags might accumulate under scenario 1, resulting in an increased extinction risk. (d) Similarly, critical thresholds within ecosystems might be more easily exceeded under scenario 1.

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Author comment: The effect of climate legacies on extinction dynamics: A systematic review — R0/PR1

Comments

Dear Editor,

I am writing to submit our manuscript entitled "The effect of climate legacies on extinction dynamics: A systematic review” for consideration for publication in Cambridge Prisms: Extinction.

The field of ecology and conservation science is currently witnessing rapid advancements, particularly in understanding the processes that drive species extinction. Climate change, in particular, has emerged as a critical factor influencing biodiversity dynamics. However, the role of past climates, or “climate legacies”, in shaping contemporary extinction dynamics remains poorly understood. Our review seeks to address this gap by systematically assessing and summarizing the impact of climate legacies on extinction dynamics.

Our review contributes significantly to the field by going beyond mere description of the literature to provide novel insights into the mechanisms underlying climate legacies and their effects on extinction risk. By synthesizing existing knowledge and providing new insights into the role of climate legacies in extinction dynamics, our review has the potential to shape future research directions and inform conservation strategies in the face of ongoing climate change.

I further have provided the contact details of three preferred reviewers from diverse backgrounds, all with an outstanding expertise on legacy effects in ecological research. I hope that you will consider our manuscript for publication in Cambridge Prisms: Extinction, where it can make a significant contribution to advancing our understanding of the ecological consequences of climate change.

Thank you for considering our manuscript. We look forward to hearing from you soon.

Sincerely,

Dr. Gregor Mathes on behalf of all authors

Review: The effect of climate legacies on extinction dynamics: A systematic review — R0/PR2

Conflict of interest statement

Reviewer declares none.

Comments

This paper presents a systematic review of the literature to synthesize the effect of previous climatic condition, what they called climate legacy on extinction dynamics. I personally believe this is an important topic and fits the scope of the journal. There are some good points discussed in the paper, and considering this is a review, rather than a formal meta-analysis, the methods are sufficiently effective. However, they only found a handful of studies using their relevance criteria and only seven that have incoporated climate legacy quantitatively but do not necessarily find the factor useful (see more below), I do not see much value of a review here. It is probably useful to show that this topic is understudied, largely due to data limitation as pointed out by the authors, but if that’s the purpose of the review, the authors first need to establish the value of such analyses based on existing theory, which they have failed to do. Overall, I find the logic behind the whole manuscript rather unclear and the arguments often sloppy. I will explain my comments with more specifics below (using the small line numbers in the left margins), but I have to say that I do not see a useful publication from the current draft.

I must admit that I have not checked all the references they have cited here, but, unless I missed some additional results, at least two of their seven highlighted referecnes did not find climate legacy a useful predictor for extinction:

Mayhew et al 2008. “Per-taxon extinction rates were also significantly positively correlated with temperature for all groups (table 1; figure 3), and in no case were lagged correlations stronger than unlagged.”

Saltre et al 2016. “We detected no evidence of a correlation between the timing of extinction events and variation in climate based on any of the measures of climate used here. ERs were ≤1.2 for all climate indices whatever the temporal lag (Fig. 2), based on either the estimated model-agreement extinction outputs (Fig. 1a) or the distribution of last fossil ages for each taxon (Fig. 1c and Supplementary Fig. 4). This demonstrates no support for the climate-driven extinction hypothesis.”

This is concerning as the authors cited the two studies, among three, for supporting climate legacy in affecting fossil extinctions (P6L23-26); the third one shares co-authors with this current manuscript and used more heavily to support their arguments. Other cases in that paragraph are apparently either on single species or based on simulations, based on what they described -- I did not check all of them. It is entirely possible that I have mis-interpreted the results above, in which case some explicit explanations might be helpful for the readers as well.

Another issue I have is that the authors treated the word “mechanism” too lightly and it is not always clear what they are trying to say. For example, I do not believe “a mechanistic understanding” (P3L51) could be easily achieved by literature review, especially given that you think this topic has not be studied enough. As the authors pointed out in a later section, mechanisms are scale-specific. Yet, they included studies on time scales that are too fine (relative to the generation time of the focal organisms) and not necessarily relevant to taxon extinction. Their discussion on mechanisms are not explaining such mismachtes but only focuses on larger-scale processes. I used “processes” here because the relevance to exitnction was not always clear. For example, point (iii) starting P8L34 is about ecosystem changes rather than any explicit mechanism of lineage/taxon extinction. A systematic rewrite is needed to clarify the relevance throughout.

Additional minor comments:

P2: the abstract is misleading as I do not think you have found high agreement even in the 7 quantitative studies you have identified that climate legacy is a crucial mechanism of extinction. Much like the paper, the logic in the abstract is not established well.

P3L38/39: why does it matter whether it’s “climate change” or “anthropogenic climate change”?

P3L40-48: there are a series of arguments here that have not be explained well. why species from stable enviroments may be less resilient? Is there some sort of tradeoff? How do past fluctuations affects species' ability to cope with climate change? Shouldn’t past fluctations selected for resilient species? What historical assembly lead to climate legacy how?

P4L37: please provide R version.

P4L55: change “and” to “or”, but also, the list doesn’t really make sense. If the goal is to tally the effects of climate legacy, rather than to tally study effort, the review should probably be based on empirical studies only, excluding reviews, meta-analyses, and theoretical analyses. Regardless, any justification would be helpful.

P5L3: how do you define “rigorous scientific methods”? In other words, what might be considered not rigorous?

P5L7: who’s the principal investigator?

P6L16: the last “or” should be changed to “and”, and the “either” in the previous line removed.

Review: The effect of climate legacies on extinction dynamics: A systematic review — R0/PR3

Conflict of interest statement

Reviewer declares none.

Comments

Mathes and colleagues have compiled an extensive systematic review of the role that climate legacy plays in regulating extinction dynamics. They found that despite the significance of climate legacies in mediating extinction patterns on many different timescales, they are seldom considered alongside other common predictors of extinction risk such as physiological traits. The authors present a comprehensive review and compelling argument for why climate legacies should be considered when assessing extinction risk, and the paper is clear and well-written with useful and attractive figures. I think that the contribution will be of broad interest to Cambridge Prisms: Extinction and to the general paleontological community. I detail below a few minor points that should be considered prior to publication.

1. The authors made a very strong argument that climate legacies should be considered when studying past extinction dynamics. However, one reason why many may overlook climate legacies is due to their difficulty to quantify, particularly on Phanerozoic timescales. It would be useful to provide the reader with a summary of the best methods of incorporating climate legacies into quantitative analyses on different timescales. For example, a brief description of the methods and formulas used in Mathes et al. (2021) as well as providing any useful code or any newer methods would provide the reader with the toolkit necessary to implement these methods. This could also be more clearly shown in figure 3 in a similar way to that in Mathes et al. (2021). Creating a pipeline for quantifying climate legacies may be out of the scope of this manuscript, but additional discussion on the methods would benefit the readers.

2. In the temporal scale section, the authors do an excellent job discussing the different mechanisms that may operate over different timescales. For example, niche conservatism may be more important to consider on million-year timescales. It would be useful for the authors to discuss the potential issues and biases involved with quantifying climate legacies in deep time and at different scales. For example, the reliability of the proxy records is not constant over geologic time, and if you are calculating species-specific spatio-temporal climate legacies using climate models these also have biases and limitations. It would be useful to include these caveats to inform the reader of the potential limitations of these methods, and this could be discussed more in the future directions section.

3. On page 11 line 41 and page 12 line 46 the authors note that of the few studies that quantitatively analyzed the impact of climate legacies on extinction risk they found climate legacies to significantly influence a species probability of extinction. However, many of these studies consider one or two variables, such as the climate change and climate trend associated with a time bin. However, to fully understand the importance of climate legacies on extinction risk we must compare this effect relative to other known predictors of extinction. For example, if we add physiological variables and geographic range size to an extinction model with climate legacies, it is possible that climate legacies are no longer included in the best model of extinction after model selection. This will be paramount to understanding the relative importance of climate legacies and would bolster the argument that climate legacies should be considered for biodiversity assessments. This could be discussed more by the authors in the future directions section.

4. The reference list compiled by the authors was very comprehensive. However, this important paper which was not included (Song et al., 2021, Thresholds of temperature change for mass extinctions, Nature) may be useful to cite and discuss since they find rates of climate change to influence extinction risk on Phanerozoic timescales.

Recommendation: The effect of climate legacies on extinction dynamics: A systematic review — R0/PR4

Comments

Dear Dr. Mathes,

Thank you for submitting your manuscript for consideration by Cambridge Prisms: Extinction. I apologize for the length of time it has take me to make a recommendation on your manuscript. As you’ll see the reviewers had strongly differing opinions on your manuscript with one arguing that the paucity of papers that actually address climate legacies suggests that this review is premature. In contrast, reviewer 2 suggests that making the argument in the literature that more studies need to address climate legacies may be worthwhile. I think that both reviewers make valid points. Thus, I’m recommending a decision of major revisions to give you the opportunity to address the weaknesses reviewer 1 points out and strengthen the argument that reviewer 2 found persuasive.

I look forward to seeing a revised manuscript that addresses each review in detail.

Best wishes,

Kate Lyons

Decision: The effect of climate legacies on extinction dynamics: A systematic review — R0/PR5

Comments

No accompanying comment.

Author comment: The effect of climate legacies on extinction dynamics: A systematic review — R1/PR6

Comments

Dear Dr. Lyons,

Thank you for the opportunity to revise our manuscript in response to the thoughtful comments from both reviewers. We appreciate the time and effort both reviewers dedicated to their assessments, as well as your guidance in synthesizing these differing perspectives.

We have responded to each reviewer’s comment and updated the manuscript accordingly. We have added more detail to individual sections, added new sections to the discussion, and also developed an R Vignette that guides through each methodology and its application from the identified studies that quantified climate legacy effects (attached as Supplementary Material).

We recognize that Reviewer 1 expressed concerns regarding the current relevance of a review on climate legacies due to the relatively few quantitative studies available. While we understand their perspective, we view this outcome as a finding itself—highlighting an underexplored yet valuable area of study. Our goal in this review was to establish the importance of considering climate legacies in extinction risk assessments, grounded in well-established ecological and evolutionary principles, to summarise both the quantitative and qualitative evidence from the existing literature, and to advocate for further quantitative study in this direction. We also felt that certain criticisms from Reviewer 1, such as claims of unclear logic or “sloppy” arguments, were not sufficiently specific to address directly; however, in response to Reviewer 1’s concerns, we carefully re-examined the studies we reference and clarified how these studies contribute to understanding climate legacies, even where effects were subtle or conditional. Additionally, we have addressed terminology issues, such as refining our use of the term “mechanisms,” and have revisited our arguments to ensure they are clearly articulated and well-supported throughout the manuscript.

We greatly appreciate the constructive suggestions from Reviewer 2. Their recommendation to expand on the methods available for quantifying climate legacies at different timescales and to incorporate further discussion on biases and limitations aligned well with our intentions to strengthen the manuscript. We included this guidance in our revisions, especially in the sections on methodological approaches and future directions.

Finally, I would like to thank you for your decision to allow us the opportunity to revise this manuscript in light of Reviewer 1’s less constructive feedback. Your encouragement to address weaknesses while strengthening our argument has been instrumental, and we are confident that this revised version will be of broad interest for the readership of Cambridge Prisms: Extinction.

Best regards,

Gregor Mathes on behalf of all authors

Review: The effect of climate legacies on extinction dynamics: A systematic review — R1/PR7

Conflict of interest statement

There are no compering interests.

Comments

I have no additional comments or concerns. Mathes and other co-authors have done a tremendous job of addressing my previous concerns. This manuscript is now worthy of publication without the need for any additional edits.

Review: The effect of climate legacies on extinction dynamics: A systematic review — R1/PR8

Conflict of interest statement

Reviewer declares none.

Comments

The authors have addressed most of my concerns to good degrees and improved the clarity and depth in their discussions. The only minor point to flag is that their new abstract is still misleading by saying “the studies in which these legacies were quantified consistently describe an improved fit of models to extinction dynamics...” This implies all of the studies found the same pattern but as they said in their response, “six out of seven studies reported that including lagged climate variables improved model performance...”. I would consider 6 out of 7 as “the majority” as in the second part of the sentence. Other than that, the paper is in a good shape for the journal.

Recommendation: The effect of climate legacies on extinction dynamics: A systematic review — R1/PR9

Comments

Dear Dr. Mathes,

Thank you for submitting your revised manuscript to Cambridge Prisms: Extinction for consideration. Both I and the reviewers appreciate the changes you made in response to their suggestions. However, reviewer 2 has one small suggestion for the abstract. I agree with the reviewer that being clear and precise in the abstract is a good idea. Thus, I’d appreciate it if you could make that change and send the manuscript back to us. Once that happens, I’ll be able to officially recommend that we accept the manuscript.

Best wishes,

Kate Lyons

Senior Editor

Cambridge Prisms: Extinction

Decision: The effect of climate legacies on extinction dynamics: A systematic review — R1/PR10

Comments

No accompanying comment.

Author comment: The effect of climate legacies on extinction dynamics: A systematic review — R2/PR11

Comments

No accompanying comment.

Recommendation: The effect of climate legacies on extinction dynamics: A systematic review — R2/PR12

Comments

Dear Dr. Mathes,

Thank you for making the last minor edits to your manuscript. I’m pleased to let you know that I am recommending that we accept your manuscript for publication in Cambridge Prisms - Extinction.

Best wishes,

Kate Lyons

Senior Editor

Decision: The effect of climate legacies on extinction dynamics: A systematic review — R2/PR13

Comments

No accompanying comment.