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Influenza surveillance in animals: what is our capacity to detect emerging influenza viruses with zoonotic potential?

Published online by Cambridge University Press:  30 September 2014

S. VON DOBSCHUETZ*
Affiliation:
Royal Veterinary College (RVC), London, UK Food and Agricultural Organization of the United Nations (FAO), Rome, Italy
M. DE NARDI
Affiliation:
Istituto Zooprofilattico Sperimentale delle Venezie, OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, OIE Collaborating Centre for Diseases at the Human–Animal Interface, Legnaro, Padova, Italy
K. A. HARRIS
Affiliation:
Animal Health and Veterinary Laboratories Agency (AHVLA), EU/OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, National Reference Laboratory for Swine Influenza, Surrey, UK
O. MUNOZ
Affiliation:
Istituto Zooprofilattico Sperimentale delle Venezie, OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, OIE Collaborating Centre for Diseases at the Human–Animal Interface, Legnaro, Padova, Italy
A. C. BREED
Affiliation:
Animal Health and Veterinary Laboratories Agency (AHVLA), EU/OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, National Reference Laboratory for Swine Influenza, Surrey, UK
B. WIELAND
Affiliation:
Royal Veterinary College (RVC), London, UK
G. DAUPHIN
Affiliation:
Food and Agricultural Organization of the United Nations (FAO), Rome, Italy
J. LUBROTH
Affiliation:
Food and Agricultural Organization of the United Nations (FAO), Rome, Italy
K. D. C. STÄRK
Affiliation:
Royal Veterinary College (RVC), London, UK
*
* Author for correspondence: Dr S. von Dobschuetz, Food and Agriculture Organization of the United Nations, Viale delle Terme di Caracalla, 00153 Rome, Italy. (Email: Sophie.vondobschuetz@fao.org) The views expressed in this publication are those of the author(s) and do not necessarily reflect the views or policies of FAO.
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Summary

A survey of national animal influenza surveillance programmes was conducted to assess the current capacity to detect influenza viruses with zoonotic potential in animals (i.e. those influenza viruses that can be naturally transmitted between animals and humans) at regional and global levels. Information on 587 animal influenza surveillance system components was collected for 99 countries from Chief Veterinary Officers (CVOs) (n = 94) and published literature. Less than 1% (n = 4) of these components were specifically aimed at detecting influenza viruses with pandemic potential in animals (i.e. those influenza viruses that are capable of causing epidemic spread in human populations over large geographical regions or worldwide), which would have zoonotic potential as a prerequisite. Those countries that sought to detect influenza viruses with pandemic potential searched for such viruses exclusively in domestic pigs. This work shows the global need for increasing surveillance that targets potentially zoonotic influenza viruses in relevant animal species.

Information

Type
Original Papers
Copyright
Copyright © Food and Agriculture Organization of the United Nations 2014 
Figure 0

Fig. 1. Number of responding (94) and non-responding (89) countries by geographical region (51·4% response rate, 94/183).

Figure 1

Fig. 2. Geographical distribution of countries contributing data to the analysis, by main information source: CVO, Chief Veterinary Officer (names of contributing CVOs are given in the online Supplementary material); MoA, Ministry of Agriculture; Nat. Ref. Lab., National Reference Laboratory; OFFLU, OIE/FAO Network of Expertise on Animal Influenza; GRIPAVI, Ecology and Epidemiology of Avian Influenza in Developing Countries.

Figure 2

Table 1. Countries contributing data, by geographical subregion (40·9% coverage)

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Fig. 3. Number and percentage of countries contributing data on surveillance systems implemented, by region (total = 98 countries).

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Fig. 4. Frequency distribution of the number of surveillance system components implemented by geographical region and globally.

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Fig. 5. Number and percentage of surveillance system components by frequency of sampling as expressed in number of surveillance rounds implemented per year (total = 587 components).

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Table 2. Number of surveillance system components by region and sampling frequency

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Fig. 6. Number and percentage of surveillance system components by surveillance type (total = 587 components).

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Table 3. Number of surveillance system components by region and type of surveillance

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Fig. 7. Number and percentage of surveillance system components by surveillance purpose (total = 587 components).

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Table 4. Number of surveillance system components by region, purpose and objective

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Table 5. Number of surveillance system components by region, purpose and funding source

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Fig. 8. Number and percentage of surveillance system components by funding source (total = 489 components).

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Fig. 9. Number of surveillance system components (total = 587) by influenza targeted and geographical region.

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Table 6. Number of surveillance system components by region, influenza virus and population targeted

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Table 7. Number of surveillance system components by region, infection status, influenza virus targeted and target population or production system

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Table 8. Number of surveillance system components by region, surveillance type and case definition used

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Table 9. Frequency of communication of results by number of surveillance system components and region

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Table 10. Number of surveillance system components in which the public health (PH) sector is alerted in case positives are found, by influenza targeted and region

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Fig. 10. Percentage of surveillance system components rendering positive results (n = 125) for which sequence information was published in online databases (e.g. GenBank, GISAID™, OpenFluDB, IRD or other).

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Table 11. Extent of sequencing and sequence availability by number of surveillance system components and region

Supplementary material: File

von Dobschuetz Supplementary Material

Supplementary Material

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