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Human Genetics Society of Australasia Position Statement: Use of Polygenic Scores in Clinical Practice and Population Health

Published online by Cambridge University Press:  23 March 2023

Mary-Anne Young*
Affiliation:
Garvan Institute of Medical Research, Sydney, NSW, Australia St Vincent’s Clinical School, Faculty of Medicine, The University of New South Wales, Sydney, New South Wales, Australia
Tatiane Yanes
Affiliation:
Dermatology Research Centre, Frazer Institute, The University of Queensland, Brisbane, Queensland, Australia
Anne E. Cust
Affiliation:
The Melanoma Institute Australia, The University of Sydney, NSW, Australia The Daffodil Centre, The University of Sydney, a joint venture with Cancer Council NSW, Sydney, New South Wales, Australia
Kate Dunlop
Affiliation:
The Daffodil Centre, The University of Sydney, a joint venture with Cancer Council NSW, Sydney, New South Wales, Australia
Sharne Limb
Affiliation:
Parkville Familial Cancer Centre, Peter MacCallum Cancer Centre and Royal Melbourne Hospitals, Melbourne, Victoria, Australia Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria, Australia
Ainsley J. Newson
Affiliation:
The University of Sydney, Faculty of Medicine and Health, Sydney School of Public Health, Sydney Health Ethics. Sydney, New South Wales, Australia
Rebecca Purvis
Affiliation:
Parkville Familial Cancer Centre, Peter MacCallum Cancer Centre and Royal Melbourne Hospitals, Melbourne, Victoria, Australia Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria, Australia
Lavvina Thiyagarajan
Affiliation:
The University of New South Wales, Sydney, New South Wales, Australia Sydney Children’s Hospital Network, Sydney, New South Wales, Australia
Rodney J. Scott
Affiliation:
School of Biomedical Sciences and Pharmacy, College of Health and Wellbeing, University of Newcastle, New South Wales, Australia Division of Molecular Medicine, NSW Health Pathology North, New Lambton, Newcastle, New South Wales, Australia
Kunal Verma
Affiliation:
Monash Genetics, Monash Health, Melbourn, Victoria, Australia Monash Heart, Monash Health, Victoria, Australia
Paul A. James
Affiliation:
Parkville Familial Cancer Centre, Peter MacCallum Cancer Centre and Royal Melbourne Hospitals, Melbourne, Victoria, Australia Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria, Australia
Julia Steinberg
Affiliation:
The Daffodil Centre, The University of Sydney, a joint venture with Cancer Council NSW, Sydney, New South Wales, Australia
*
Author for correspondence: Mary-Anne Young, Email: m.young@garvan.org.au

Abstract

Considerable progress continues to be made with regards to the value and use of disease associated polygenic scores (PGS). PGS aim to capture a person’s genetic liability to a condition, disease, or a trait, combining information across many risk variants and incorporating their effect sizes. They are already available for clinicians and consumers to order in Australasia. However, debate is ongoing over the readiness of this information for integration into clinical practice and population health. This position statement provides the viewpoint of the Human Genetics Society of Australasia (HGSA) regarding the clinical application of disease-associated PGS in both individual patients and population health. The statement details how PGS are calculated, highlights their breadth of possible application, and examines their current challenges and limitations. We consider fundamental lessons from Mendelian genetics and their continuing relevance to PGS, while also acknowledging the distinct elements of PGS. Use of PGS in practice should be evidence based, and the evidence for the associated benefit, while rapidly emerging, remains limited. Given that clinicians and consumers can already order PGS, their current limitations and key issues warrant consideration. PGS can be developed for most complex conditions and traits and can be used across multiple clinical settings and for population health. The HGSA’s view is that further evaluation, including regulatory, implementation and health system evaluation are required before PGS can be routinely implemented in the Australasian healthcare system.

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Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© Human Genetics Society of Australasia, 2023. Published by Cambridge University Press on behalf of International Society for Twin Studies
Figure 0

Table 1. Considerations for PGS Implementation into Australasian Healthcare Systems

Figure 1

Table 2. Examples of potential applications of PGS in healthcare

Figure 2

Fig. 1. Potential strategies to enable PGS to be implemented in clinical practice.