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Evaluating enrichment use in group-housed rhesus macaques (Macaca mulatta): A machine learning approach

Published online by Cambridge University Press:  09 December 2024

Giulia Ciminelli*
Affiliation:
Institute of Bioscience, Faculty of Medical Sciences, Henry Wellcome Building, Framlington Place, Newcastle University, Newcastle NE2 4HH, UK
Claire Witham
Affiliation:
Centre for Macaques at Harwell, Medical Research Council, Salisbury, UK
Melissa Bateson
Affiliation:
Institute of Bioscience, Faculty of Medical Sciences, Henry Wellcome Building, Framlington Place, Newcastle University, Newcastle NE2 4HH, UK
*
Corresponding author: Giulia Ciminelli; Email: giuliaciminelli88@gmail.com
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Abstract

Environmental enrichment programmes are widely used to improve welfare of captive and laboratory animals, especially non-human primates. Monitoring enrichment use over time is crucial, as animals may habituate and reduce their interaction with it. In this study we aimed to monitor the interaction with enrichment items in groups of rhesus macaques (Macaca mulatta), each consisting of an average of ten individuals, living in a breeding colony. To streamline the time-intensive task of assessing enrichment programmes we automated the evaluation process by using machine learning technologies. We built two computer vision-based pipelines to evaluate monkeys’ interactions with different enrichment items: a white drum containing raisins and a non-food-based puzzle. The first pipeline analyses the usage of enrichment items in nine groups, both when it contains food and when it is empty. The second pipeline counts the number of monkeys interacting with a puzzle across twelve groups. The data derived from the two pipelines reveal that the macaques consistently express interest in the food-based white drum enrichment, even several months after its introduction. The puzzle enrichment was monitored for one month, showing a gradual decline in interaction over time. These pipelines are valuable for assessing enrichment by minimising the time spent on animal observation and data analysis; this study demonstrates that automated methods can consistently monitor macaque engagement with enrichments, systematically tracking habituation responses and long-term effectiveness. Such advancements have significant implications for enhancing animal welfare, enabling the discontinuation of ineffective enrichments and the adaptation of enrichment plans to meet the animals’ needs.

Information

Type
Research Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2024. Published by Cambridge University Press on behalf of The Universities Federation for Animal Welfare
Figure 0

Figure 1. Types of enrichment used for the studies showing (A) white drum used for food enrichment, (B) puzzle enrichment with blue monkey toy and (C) revised puzzle enrichment without blue monkey toy.

Figure 1

Figure 2. Automated pipelines used to detect enrichment usage by groups of macaques. These figures illustrate the steps involved in the automated detection of white drum enrichment usage (A to C) and puzzle enrichment usage (D to F). More specifically these show (A) the input frame from video for white drum enrichment, (B) segmentation mask and bounding box (bbox) for the white drum (circle shows the centre-point [CP] of the bounding box, (C) example of x co-ordinate from the bounding box with a threshold (dotted line), (D) input frame from video for puzzle enrichment, (E) segmentation masks for monkeys (M and unlabelled white objects) and front platform (FP) together with region of interest (ROI) and (F) number of monkeys interacting with the puzzle enrichment.

Figure 2

Table 1. The metrics used to validate the White Drum Model, which was employed to detect the enrichment across nine rhesus macaque enclosures. Specifically, it reports the mean average precision (mAP) which compares the ground-truth bounding box (and mask) to the detected box (and mask) and returns a score. These comparisons are reported for different intersection over union (IoU) thresholds. This is a measure of the overlap between the predicted bounding box (and mask) and the ground truth bounding box (and mask)

Figure 3

Table 2. The evaluation of the white drum enrichment pipeline, reporting the accuracy, recall, and precision in detecting the white drum usage. These metrics compare the pipeline output with the ground truth, obtained from direct observation of six videos recording macaques interacting with the enrichment

Figure 4

Table 3. The validation results of the YOLO model used to evaluate puzzle enrichment usage across twelve macaque groups, including precision, recall, and Mean Average Precision (mAP) for various objects

Figure 5

Table 4. The validation of the puzzle enrichment pipeline used to evaluate the puzzle enrichment usage in twelve different groups of rhesus macaques. This reports the accuracy of the model in detecting the macaques in the region of interest (ROI) around the enrichment puzzle

Figure 6

Figure 3. White drum enrichment use across nine macaques groups, each with a mean (± SD) group size of 10 (± 2.9) individuals. Boxplots showing the number of frames where the drum moved, caused by macaques’ integration with it, on Mondays and Thursdays for each interval after food was given. Notably, raisins were only placed into the drum on Mondays, while feeding time occurred in the morning every day.

Figure 7

Table 5. Type III Analysis of Variance (ANOVA) Table with Satterthwaite’s Method, showing the effects of detection per hour, hour of the day, group type, and weekday on the white drum enrichment movement across nine groups of macaques over a total of 324 h

Figure 8

Figure 4. Interaction with puzzle enrichment by twelve groups of macaques each with a mean (± SD) group size of 10 (± 2.8) individuals showing (A) average number of interactions with the puzzle enrichment per group per hour plotted against days since added (solid line shows fit from the mixed effect model output), (B) average number of interactions with the enrichment per group per hour when the blue monkey toy was present or absent and (C) average number of interactions with the enrichment per group per hour relative to time of day (solid line shows fit from the mixed effect model).

Figure 9

Table 6. Coefficients and Statistical Significance for the puzzle enrichment study, which aimed to detect enrichment usage across 12 groups of rhesus macaques over a month of observation. The table presents the estimates, standard errors, z-values, and P-values for each predictor variable in the model, indicating the effect size and significance of each variable

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