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Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies

Published online by Cambridge University Press:  28 November 2022

Laura van Schijndel
Affiliation:
Laboratory of Genetics, Department of Plant Sciences, Wageningen University, Wageningen, The Netherlands
Basten L. Snoek
Affiliation:
Bioinformatics Group, Department of Biology, Utrecht University, Utrecht, The Netherlands
Kirsten ten Tusscher*
Affiliation:
Computational Developmental Biology Group, Department of Biology, Utrecht University, Utrecht, The Netherlands
*
Author for correspondence: K. ten Tusscher, E-mail: k.h.w.j.tentusscher@uu.nl

Abstract

Information processing is an essential part of biology, enabling coordination of intra-organismal processes such as development, environmental adaptation and inter-organismal communication. Whilst in animals with specialised brain tissue a substantial amount of information processing occurs in a centralised manner, most biological computing is distributed across multiple entities, such as cells in a tissue, roots in a root system or ants in a colony. Physical context, called embodiment, also affects the nature of biological computing. While plants and ant colonies both perform distributed computing, in plants the units occupy fixed positions while individual ants move around. This distinction, solid versus liquid brain computing, shapes the nature of computations. Here we compare information processing in plants and ant colonies, highlighting how similarities and differences originate in, as well as make use of, the differences in embodiment. We end with a discussion on how this embodiment perspective may inform the debate on plant cognition.

Information

Type
Review
Creative Commons
Creative Common License - CCCreative Common License - BYCreative Common License - NCCreative Common License - SA
This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike licence (https://creativecommons.org/licenses/by-nc-sa/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the same Creative Commons licence is included and the original work is properly cited. The written permission of Cambridge University Press must be obtained for commercial re-use.
Copyright
© The Author(s), 2022. Published by Cambridge University Press in association with The John Innes Centre
Figure 0

Fig. 1. Biological computing. All biological organisms, be it primates, snails, plants or single-celled amoebas, sense their environment and internal state, and process, integrate and prioritise this information to compute which action to take next. Figure inspired on earlier work in Scheres and van der Putten (2017).

Figure 1

Fig. 2. Different spatial organisations of information processing in biological systems. Left: centralised information processing based on a central dominant brain in primates (Image source chimpanzees: https://sciencenorway.no, photographer Etsuko Nogami). Middle: hybrid information processing in an octopus that combines a central brain with semi-autonomous information processing in its arms. (Image source octopus: Octolab TV https://octolab.tv) Right: fully distributed information processing with no central processing organ in plants (Image source plant: New Jersey Agricultural Society Learning Through Gardening program) (Image computer: https://computerkiezen.nl/computer-soorten/desktop-computer/).

Figure 2

Table 1 Comparative overview of embodiment aspects for plants and ant colonies discussed in this work

Figure 3

Fig. 3. Storage of spatial environmental information. Top: in the solid brain setting of a plant root, environmental information regarding the direction of a salt gradient can be stored internally in the shape of an auxin asymmetry. Bottom: in the liquid brain setting of an ant colony, environmental information regarding the direction and shortest path towards a food source is stored externally through a pheromone trail.

Author comment: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R0/PR1

Comments

Dear Editor,

Hereby I would like to submit our article titled "" for consideration in Quantitative Plant Biology.

Our article discusses the importance of whether biological information processing occurs in a centralized or distributed manner, and -in case of distributed computing- whether individual computing units are fixed or flexible in position, for the nature of the information processing and storage of information. To highlight the particularities of solid brain, distributed information processing in plants a comparison is made with the liquid brain, distributed information processing in ant colonies, that has been particularly well studied. We end with a dicussion on how taking into account embodiment, the physical context in which information processing occurs, and considering the solid brain, distributed nature of plant computing may help resolve the debate on plant cognition.

We believe our article to be of interest to an audience of plant biologists keen to integrate quantitative, information and computer science perspectives into their research on plant development, adaptation and signalling, and as such believe it is highly suitable for Quantitative Plant Biology.

Thank you for your consideration,

Kirsten ten Tusscher

Review: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R0/PR2

Conflict of interest statement

Reviewer declares none.

Comments

Comments to Author: I liked this paper, and I hope to see it published. It provides a well-defined comparison between two major limit cases within the spectrum of cognitive systems representing the liquid (ants) and solid (plants) scenarios, as defined in the paper. I believe this comparison is relevant for many reasons. We really need to expand the reach of our understanding of cognitive networks and that requires, as many other important problems in evolutionary biology, a comparative approximation.

The paper is well written and I like the summary of similarities and differences captured in table 1, which gives a good overview of the features used in the comparative analysis.

I just suggest the authors add a couple of references that should complete the current reference list. One is in relation to the mention of criticality in the dynamics of stomata synchronization in leaves. Since the reader might not be familiar with the topic, I would suggest using Per Bak's book (How Nature Works) or the more technical textbook by Jensen. I also believe that, since this is close to some extent with neural avalanches, another potential citation is the book "Criticality in neural systems" (Niebuer et al. (eds)), Springer.

Finally, the context of ant colony modelling is under-represented in the reference list (where rather recent papers are cited). I think that some general reference that includes the topic of ants and the models used to describe their trail formation is required. I leave this open to the authors (perhaps Camazine's et al book on self-organization?).

There are a few typos that need checking, but nothing serious (a couple of fused pairs of words in the abstract).

But again, I really enjoyed reading the paper and I think it will be a relevant contribution to the ongoing discussion about cognition in natural systems beyond standard metaphors.

Review: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R0/PR3

Conflict of interest statement

Reviewer declares none.

Comments

Comments to Author: I enjoyed this commentary piece on the important topic of information processing in distributed systems, and the focus on comparing "solid" and "fluid" modes. The examples selected are thought provoking and illustrate some essential similarities and differences. I think it is appropriate to focus on embodiment, but I feel the manuscript would benefit from some more overt structure. It provides interesting information, but I find it difficult to discern key arguments and conclusions. The examples prompt lots of questions (which is good), but I think the authors could do more to address them.

The glossary is helpful (particularly as the precise meaning of soe of these terms might be unfamiliar), but what I felt was lacking at the start was a clear statement of what key challenges distributed information processing (living) systems face. This would provide some context for the examples that follow. Examples (non-exhaustive) of what I mean include:

- how do individual entities (cells / ants) receive and integrate both local and system-wide information?

- how is robustness (in some sense) of system-level response ensured in noisy / variable environments?

- how do systems adapt to changes in their environment? How is this managed by the distributed information processing system?

- what kinds of constraints do these requirements place on the type of signalling system that is used?

- does the type of embodiment (solid vs fluid) constrain the types of message-passing / signalling that can be used?

Most of these questions are addressed by the examples, but I found myself having to construct the questions as I went along.

Since much thought on signalling and information processing in cellular systems has focused on animal systems, I was surprised that the authors didn't discuss plant hormones more explicitly. The well-studied feedback between flux and local response / conditions (including mechanical) in auxin transport seems to be a key mechanism for integrating local and global information that goes hand in hand with the embodiment specific to plants. The fact that solid brains can tune connections is mentioned (in abstract) on p.6 - I think signalling systems such as that centred on auxin are a key mechanism used in the rigid topology of plant tissues to tune intercellular connections (plasmodesmata re also interesting in this context). This ability to tune connections dynamically is surely an important aspect of how very solid systems (those with a rigid topology) can achieve adaptive information processing.

Overall, I like the topic and the examples discussed here. I just think the manuscript needs a bit more structure to bring out more clearly the interesting points that are illustrated by the examples.

Specific points:

1. "CA" is used on p.8 without explanation. I presume it is "cellular automata", but this should be explicit. Does the notion of a CA model need explanation here? I'm not sure everyone who might want to read this will be familiar with them.

2. Full details need to be provided for some of the references.

Recommendation: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R0/PR4

Comments

Comments to Author: Dear Prof. ten Tusscher,

I am sorry for the delay, but finally we received the required number of reviews. Both reviewers like your manuscript and recommend it for publication. However, both have a list of revisions and suggestions. Please take these into account, as I believe they will help to improve your article.

Kind regards,

Christian Fleck

Decision: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R0/PR5

Comments

No accompanying comment.

Author comment: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R1/PR6

Comments

Dear editor,

Hereby we would like to resubmit our manuscript. As per your request we now changed its title into "Embodiment in distributed information processing; “Solid” Plants versus “Liquid” Ant colonies".

We thank the reviewers for their overall appreciation and constructive remarks, which have helped us improve the clarity of our manuscript.

With kind regards

Kirsten ten Tusscher

Review: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R1/PR7

Conflict of interest statement

No conflict of interests.

Comments

Comments to Author: The authors have answered my coments and the paper is ready for publication.

Review: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R1/PR8

Conflict of interest statement

Reviewer declares none.

Comments

Comments to Author: The authors have addressed my comments satisfactorily.

Recommendation: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R1/PR9

Comments

Comments to Author: Dear Prof. ten Tusscher, dear Kirsten,

the review find your manuscript sufficiently improved and ready for publication. I also enjoyed reading your improved version and recommend your paper for publication.

Kind regards,

Christian Fleck

Decision: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R1/PR10

Comments

No accompanying comment.

Author comment: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R2/PR11

Comments

Dear editor,

We are happy that our manuscript is now accepted and submit the requested changes for the graphical abstract and Figure 3.

Kind regards,

Kirsten

Recommendation: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R2/PR12

Comments

No accompanying comment.

Decision: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R2/PR13

Comments

No accompanying comment.