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Social Adversity Reduces Polygenic Score Expressivity for General Cognitive Ability, but Not Height

Published online by Cambridge University Press:  08 April 2022

Mateo Peñaherrera-Aguirre
Affiliation:
Department of Psychology, University of Arizona, Tucson, AZ, USA
Michael A. Woodley*
Affiliation:
Vrije Universiteit Brussel, Center Leo Apostel for Transdisciplinary Studies, Brussels, Belgium
Matthew A. Sarraf
Affiliation:
Independent Researcher, USA
Kevin M. Beaver
Affiliation:
College of Criminology and Criminal Justice, Florida State University, Tallahassee, FL, USA
*
Author for correspondence: Michael A. Woodley of Menie, Email: Michael.Woodley@vub.be

Abstract

It has been hypothesized that even ‘perfect’ polygenic scores (PGSs) composed of only causal variants may not be fully portable between different social groups owing to gene-by-environment interactions modifying the expression of relevant variants. The impacts of such interactions involving two forms of social adversity (low socioeconomic status [SES] and discrimination) are examined in relation to the expressivity of a PGS for educational attainment composed of putatively causal variants in a large, representatively sampled and genotyped cohort of US children. A relatively small-magnitude Scarr–Rowe effect is present (SES × PGSEDU predicting General Cognitive Ability [GCA]; sR = .02, 95% CI [.00, .04]), as is a distinct discrimination × PGSEDU interaction predicting GCA (sR = −.02, 95% CI [−.05, 00]). Both are independent of the confounding main effects of 10 ancestral principal components, PGSEDU, SES, discrimination and interactions among these factors. No sex differences were found. These interactions were examined in relation to phenotypic and genotypic data on height, a prospectively more socially neutral trait. They were absent in both cases. The discrimination × PGSEDU interaction is a co-moderator of the differences posited in modern versions of Spearman’s hypothesis (along with shared environmentality), lending support to certain environmental explanations of those differences. Behavior-genetic analysis of self-reported discrimination indicates that it is nonsignificantly heritable (h2 = .027, 95% CI [−.05, .10]), meaning that it is not merely proxying some underlying source of heritable phenotypic variability. This suggests that experiences of discrimination might stem instead from the action of purely social forces.

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Type
Article
Copyright
© The Author(s), 2022. Published by Cambridge University Press on behalf of International Society for Twin Studies
Figure 0

Table 1. Results of running the regression analyses predicting GCA using PGSEDU separately by SIRE group, along with Bonferroni-corrected significances of differences

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Table 2. Results of running the regression analyses predicting height using PGSHEIGHT separately by SIRE group, along with Bonferroni-corrected significances of differences

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Table 3. Unit-weighted factor loadings of six SES indicators. All λ values are statistically significant

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Table 4. Unit-weighted factor loadings of six discrimination indicators. All λ values are statistically significant

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Table 5. Self-reported double log discrimination means disaggregated by SIRE group. Bonferroni-adjusted multiple comparisons examining the difference between SIRE groups

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Table 6. General linear models predicting GCA using PGSEDU residuals, SES, double log-transformed discrimination, and the corresponding interactions on GCA after controlling for the influence of ancestral principal components and confounding interactions (corresponding effect sizes not shown). All variables are standardized prior to regression. Results are for the combined sample, males, and females. Also presented are the results of two CPEM analyses, one examining the Scarr–Rowe effect, and a second examining the discrimination × PGSEDU interaction

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Fig. 1 (a). Regression plane plot visualising the interactions between PGSEDU and SES on GCA scores (the Scarr-Rowe effect) (b). Regression plane plot visualising the interactions between PGSEDU and discrimination on GCA scores (the discrimination×PGSEDU interaction).

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Table 7. General linear model evaluating the influence of PGSHEIGHT residuals, SES, double log-transformed discrimination, and the corresponding interactions on height controlling for ancestral principal components and confounding interactions (results not shown). All variables are standardised prior to regression

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Table 8. Variance component analyses estimating the proportion of additive genetic variance (A2), shared environmental variance (C2), and unshared environmental variance (E2) associated with discrimination and GCA along with 95% CIs

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Table 9. Loading of GCA on subtests along with (sign reversed) discrimination×PGSEDU interactions, (weighted) SIRE group difference in subtest score means (rescaled as r values), Scarr-Rowe effects, and A, C, and E variance components transformed as r values. The vector correlations among these are reported along with the results of the multivector co-moderation analysis