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Fixation probability of beneficial mutations in a fluctuating population

Published online by Cambridge University Press:  17 February 2009

STEINAR ENGEN*
Affiliation:
Centre for Conservation Biology, Department of Mathematical Sciences, Norwegian University of Science and Technology, N-7491 Trondheim, Norway
RUSSELL LANDE
Affiliation:
Division of Biology, Imperial College London, Silwood Park Campus, Ascot, Berkshire SL5 7PY, UK Centre for Conservation Biology, Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway
BERNT-ERIK SÆTHER
Affiliation:
Centre for Conservation Biology, Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway
*
*Corresponding author. Tel: +47 73 591747. Fax: +47 73 591038. e-mail: steinaen@math.ntnu.no
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Summary

We compute an accurate approximation to the probability of fixation for a beneficial mutation in a population fluctuating with a stationary distribution of population size. The population dynamics are described by the theta-logistic model with environmental variance, assuming that the population size is large enough to ignore demographic variance. We show that stochastic fluctuations of population size reduce the probability of fixation. However, it is not the magnitude of the population fluctuations per se that creates this reduction. Only the environmental variance has a substantial effect on the probability of fixation. The strength of density dependence (or expected return time to equilibrium) and the functional form of density-regulation, given by the parameter θ in the theta-logistic model, have little effect on the fixation probability. Effective population size based on harmonic mean population size will therefore underestimate the expected fixation rate of beneficial mutations in fluctuating populations.

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Type
Paper
Copyright
Copyright © 2009 Cambridge University Press
Figure 0

Fig. 1. Stationary distributions of the scaled log population size g(x) (solid line) and the scaled log population size at mutation h(x|M) (dashed line) for two values of the environmental variance σe2 in the theta-logistic model. The other parameters are θ=1 and γ=0·2.

Figure 1

Fig. 2. The approximation to the unconditional probability of fixation (solid lines) u(x) for a mutation at population size N, where x=ln(N/K). Dashed lines show u(x) plus or minus one standard deviation σ(x). The environmental variance is σe2=0·1 in the upper panel and 0·01 in the lower. Other parameters are s=0·02, θ=1 and γ=0·2. Dotted horizontal lines show the exact probability of fixation (0·03896≈0·04=2s) for a constant population size.

Figure 2

Fig. 3. Simulation of the theta-logistic process scaled by the carrying capacity (solid line) with parameters σe2=0·01, γ=0·2, and θ=1 (logistic model). Unconditional probabilities of fixation scaled by 2s, that is, u(x)/(2s), evaluated for the population size each generation (dashed line). The selection coefficient for the new beneficial mutation is s=0·02.

Figure 3

Fig. 4. The probability of fixation u(x) (upper panel) and the scaled probability of fixation u(x)N/(2Ks) (lower panel) as functions of the scaled log population size x=ln(N/K) for different values of mean return time to equilibrium T=1/γ. Other parameters are σe2=0·01, θ=1 and s=0·02.

Figure 4

Fig. 5. The probability of fixation u(x) (upper panel) and the scaled probability of fixation u(x)N/(2Ks) as functions of the scaled log population size x=ln(N/K) for different values of θ. Other parameters are σe2=0·01, γ=0·2 and s=0·02.

Figure 5

Fig. 6. The scaled fixation rate u(x)N/(2sK) as a function of the scaled log population size x for different values of the environmental variance σe2. Other parameters are T=5 (γ=0·2), θ=1 and s=0·02.

Figure 6

Fig. 7. The mean fixation probability ū for a random mutation as a function of one of the parameters σe2 (solid line), θ (dashed line), and γ (dotted line), keeping the others constant. The baseline parameters are σe2=0·01, θ=1 and γ=0·2. Ranges of parameters shown in the graph are [0·001,0·1] for σe2, [−0·5,1·0] for θ and [0·1,1·0] for γ. The CV in population size ranges from 0 to approximately 0·8 in the graph, the thick solid horizontal line being the probability of fixation 0·03896≈2s=0·04 for a constant population size.

Figure 7

Fig. 8. The upper panel shows the mean fixation probability ū plotted against the environmental variance σe2 for the Gompertz model with θ=0 (solid lines). For each CV in population size T (and γ=1/T) changes with σe2 so that υ=σe2/(2γ−γ2) is kept constant, that is, the stationary distribution is the same along each line. Only values of σe2 corresponding to 1<T<1000 are used. Dotted lines show the corresponding values obtained by using the harmonic mean, that is, the exact value for a constant population, which is 0·03896 multiplied by Ne/, where Ne is the mean of 1/N and is the mean of N in the stationary distribution. The lower panel shows the same mean fixation probability ū plotted against T=1/γ.