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Everything but the kitchen sink: The use of multiple hypothesis generation methods to investigate an outbreak of Salmonella Enteritidis associated with frozen profiteroles and eclairs

Published online by Cambridge University Press:  30 September 2024

Courtney R. Smith*
Affiliation:
Public Health Agency of Canada, Guelph, ON, Canada
Marsha Taylor
Affiliation:
British Columbia Centre for Disease Control, Vancouver, BC, Canada
Anna J. W. Manore
Affiliation:
Public Health Agency of Canada, Guelph, ON, Canada
April Hexemer
Affiliation:
Public Health Agency of Canada, Guelph, ON, Canada
Bijay Adhikari
Affiliation:
Saskatchewan Ministry of Health, Regina, SK, Canada
David Alexander
Affiliation:
Cadham Provincial Laboratory, Diagnostic Services, Shared Health, Winnipeg, MB, Canada
Robin Atkinson
Affiliation:
Canadian Food Inspection Agency, Ottawa, ON, Canada
Linda Chui
Affiliation:
Alberta Precision Laboratories, Public Health Laboratory, Edmonton, AB, Canada Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, AB, Canada
Eleni Galanis
Affiliation:
British Columbia Centre for Disease Control, Vancouver, BC, Canada
Colette Gaulin
Affiliation:
Ministère de la Santé et des Services Sociaux, Québec, QC, Canada
Meghan Griffin
Affiliation:
Canadian Food Inspection Agency, Ottawa, ON, Canada
Lance Honish
Affiliation:
Alberta Health Services, Edmonton, AB, Canada
Ashley Kearney
Affiliation:
Public Health Agency of Canada, Winnipeg, MB, Canada
Victor Mah
Affiliation:
Alberta Health, Edmonton, AB, Canada
Rachel McCormick
Affiliation:
Public Health Agency of Canada, Guelph, ON, Canada
Michelle Murti
Affiliation:
Public Health Ontario, Toronto, ON, Canada
*
Corresponding author: Courtney R. Smith; Email: courtney.r.smith@phac-aspc.gc.ca
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Abstract

In December 2018, an outbreak of Salmonella Enteritidis infections was identified in Canada by whole-genome sequencing (WGS). An investigation was initiated to identify the source of the illnesses, which proved challenging and complex. Microbiological hypothesis generation methods included comparisons of Salmonella isolate sequence data to historical domestic outbreaks and international repositories. Epidemiological hypothesis generation methods included routine case interviews, open-ended centralized re-interviewing, thematic analysis of open-ended interview data, collection of purchase records, a grocery store site visit, analytic comparison to healthy control groups, and case–case analyses. Food safety hypothesis testing methods included food sample collection and analysis, and traceback investigations. Overall, 83 cases were identified across seven provinces, with onset dates from 6 November 2018 to 7 May 2019. Case ages ranged from 1 to 88 years; 60% (50/83) were female; 39% (22/56) were hospitalized; and three deaths were reported. Brand X profiteroles and eclairs imported from Thailand were identified as the source of the outbreak, and eggs from an unregistered facility were hypothesized as the likely cause of contamination. This study aims to describe the outbreak investigation and highlight the multiple hypothesis generation methods that were employed to identify the source.

Information

Type
Original Paper
Creative Commons
Creative Common License - CCCreative Common License - BYCreative Common License - NCCreative Common License - ND
This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives licence (http://creativecommons.org/licenses/by-nc-nd/4.0), which permits non-commercial re-use, distribution, and reproduction in any medium, provided that no alterations are made and the original article is properly cited. The written permission of Cambridge University Press must be obtained prior to any commercial use and/or adaptation of the article.
Copyright
© Public Health Agency of Canada, 2024. Published by Cambridge University Press
Figure 0

Figure 1. Number of confirmed outbreak cases of Salmonella Enteritidis by symptom onset, specimen collection, or isolation date (n = 82). One case did not have a reported onset, specimen collection, or isolation date and is not included in this figure.

Figure 1

Figure 2. Timeline of hypothesis generation and testing methods employed throughout the outbreak investigation in 2019.

Figure 2

Table 1. Online survey results and comparison to outbreak case exposuresa