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Morphological and molecular characterisations of Aphelenchoides vinhphucensis sp. n. associated with rice from Vietnam

Published online by Cambridge University Press:  07 November 2025

A.H. Le
Affiliation:
Institute of Biology, Vietnam Academy of Science and Technology, Hanoi, Vietnam Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
L.T.M. Le
Affiliation:
Institute of Biology, Vietnam Academy of Science and Technology, Hanoi, Vietnam Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
D.T. Nguyen
Affiliation:
Institute of Biology, Vietnam Academy of Science and Technology, Hanoi, Vietnam Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
T.H. Nguyen
Affiliation:
Institute of Biology, Vietnam Academy of Science and Technology, Hanoi, Vietnam Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
P.Q. Trinh*
Affiliation:
Institute of Biology, Vietnam Academy of Science and Technology, Hanoi, Vietnam Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
*
Corresponding author: P.Q. Trinh; Email: tqphap@gmail.com
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Abstract

The genus Aphelenchoides Fischer, 1894, encompasses nearly 200 species with significant ecological and economic importance, yet its taxonomy remains complex due to morphological similarities among species and limited molecular data. In this study, we describe a new species, Aphelenchoides vinhphucensis sp. n., collected from the rhizosphere of rice (Oryza sativa L.) in Vinh Phuc Province, Vietnam. The new species is distinguished by its morphological characteristics, including a slender stylet (9.6–12.7 μm), distinct lateral fields with four lines, a conical tail with a pointed mucro, and a well-developed post-uterine sac. Males feature three pairs of caudal papillae and arcuate spicules. Scanning electron microscopy provided detailed insights into surface features, complementing light microscopy observations. Molecular analyses of the D2-D3 regions of 28S rRNA and 18S rRNA supported the distinct phylogenetic placement of Aphelenchoides vinhphucensis sp. n., differentiating it from closely related species. Bayesian phylogenetic analysis confirmed its divergence, contributing to our understanding of biodiversity of the genus Aphelenchoides. This integrative approach highlights the importance of combining classical morphological methods with modern molecular tools for accurate species identification. The discovery of Aphelenchoides vinhphucensis sp. n. underscores the nematode diversity in Vietnam, especially those associated with rice cultivation.

Information

Type
Research Paper
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2025. Published by Cambridge University Press
Figure 0

Figure 1. Light microscopy and Scanning electron microscopy pictures of Aphelenchoides vinhphucensis sp. n. A, C-I: Female. A: Entire body; C, D: Anterior end; E: Vulva region showing post-uterus sac; F: Vulva region under SEM; G: Lateral field at mid-body; H-I: Tail region. J, B: Entire body of the male; K: Tail region of the males. (Scale bar: A, B: 50 μm; C: 3 μm; D-H, J, K: 10 μm; I: 5 μm).

Figure 1

Figure 2. Drawings of Aphelenchoides vinhphucensis sp. n. A, C–G: Female. A: Entire body; C, D: Anterior end, E: Vulva region showing post-uterus sac; F: Lateral field at mid-body; G: Tail region. B: Entire body of the male; H, I: Tail region of the male. (Scale bar: A, B: 50 μm, C: 3 μm, D-I: 10 μm).

Figure 2

Table 1. Measurements of Aphelenchoides vienamensis sp. n. from Vietnam and most similar species. All measurements are in μm (except for ratio) and in the form: mean ± s.d. (range)

Figure 3

Figure 3. Bayesian phylogenetic tree of Aphelenchoides species based on the 18S rRNA gene, constructed using the HKY+G substitution model. Posterior probability values are shown at each node. Sequences generated in this study are highlighted in red and bolded.

Figure 4

Figure 4. Bayesian phylogenetic tree of Aphelenchoides species based on D2–D3 regions of the 28S rRNA gene, constructed using the JC69 substitution model. Posterior probability values are indicated at each node. Sequences obtained in this study are highlighted in red and bolded.