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Pilot simulation study using meat inspection data for syndromic surveillance: use of whole carcass condemnation of adult cattle to assess the performance of several algorithms for outbreak detection

Published online by Cambridge University Press:  08 January 2015

C. DUPUY
Affiliation:
Unité Epidémiologie, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), F-69364, Lyon, France. Unité d’épidémiologie animale, UR346, INRA, F-63122, St Genès Champanelle, France.
E. MORIGNAT
Affiliation:
Unité Epidémiologie, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), F-69364, Lyon, France.
F. DOREA
Affiliation:
Swedish Zoonosis Centre. Department of Disease Control and Epidemiology. National Veterinary Institute (SVA), Uppsala, Sweden
C. DUCROT
Affiliation:
Unité d’épidémiologie animale, UR346, INRA, F-63122, St Genès Champanelle, France.
D. CALAVAS
Affiliation:
Unité Epidémiologie, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), F-69364, Lyon, France.
E. GAY*
Affiliation:
Unité Epidémiologie, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), F-69364, Lyon, France.
*
* Author for correspondence: E. Gay, Unité Epidémiologie, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), 31 avenue Tony Garnier, F-69364, Lyon, Cedex 07, France. (Email: emilie.gay@anses.fr)
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Summary

The objective of this study was to assess the performance of several algorithms for outbreak detection based on weekly proportions of whole carcass condemnations. Data from one French slaughterhouse over the 2005–2009 period were used (177 098 slaughtered cattle, 0.97% of whole carcass condemnations). The method involved three steps: (i) preparation of an outbreak-free historical baseline over 5 years, (ii) simulation of over 100 years of baseline time series with injection of artificial outbreak signals with several shapes, durations and magnitudes, and (iii) assessment of the performance (sensitivity, specificity, outbreak detection precocity) of several algorithms to detect these artificial outbreak signals. The algorithms tested included the Shewart p chart, confidence interval of the negative binomial model, the exponentially weighted moving average (EWMA); and cumulative sum (CUSUM). The highest sensitivity was obtained using a negative binomial algorithm and the highest specificity with CUSUM or EWMA. EWMA sensitivity was too low to select this algorithm for efficient outbreak detection. CUSUM's performance was complementary to the negative binomial algorithm. The use of both algorithms on real data for a prospective investigation of the whole carcass condemnation rate as a syndromic surveillance indicator could be relevant. Shewart could also be a good option considering its high sensitivity and simplicity of implementation.

Information

Type
Original Papers
Copyright
Copyright © Cambridge University Press 2015 
Figure 0

Fig. 1. Description of steps in the method for outbreak-free baseline construction and simulation of 40 outbreak scenarios.

Figure 1

Table 1. Description of algorithms tested for outbreak detection

Figure 2

Table 2. Number of cattle slaughtered and proportion of cattle with whole carcass condemnation in the studied population according to age-sex and production type

Figure 3

Table 3. Summary statistical values of performance indicators for all age-sex categories. For each indicator the median (minimum-maximum) values for each age-sex category, each outbreak duration and magnitude are presented by outbreak shape and outbreak detection algorithm

Figure 4

Table 4. Summary statistical values of performance indicators for all age-sex categories. For each indicator the median (minimum-maximum) values for each age-sex category and outbreak duration are presented by outbreak shape and outbreak detection algorithm

Figure 5

Table 5. Summary statistical values of performance indicators for all age-sex categories. For each indicator the median (minimum-maximum) values for each age-sex category and outbreak magnitude are presented by outbreak shape and outbreak detection algorithm

Supplementary material: File

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Table S1

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Table S2

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Table S3

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Table S4

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