This study reveals the mineralogy and origin of unusual silica-carbonate bodies (listvenite) associated with tectonized serpentinites and Permian–Triassic phyllites from the Tokat region in northern Turkey. The listvenite includes green-coloured opaline silica intersected by saddle dolomite and minor sulfide mineralization (pyrite, cobaltite and enargite). It also hosts abundant chalcedonic bodies, i.e. agate of bluish to bluish-white colour. Listvenite-hosted opaline silica has been recognized as lussatite, a fibrous birefringent opal-CT variety, with a dominantly ‘tridymitic’ structure. The green colouration results from discrete, but widely disseminated, Cr-bearing smectite-group minerals, such as volkonskoite and/or Cr-montmorillonite. Chromium, the main colouring agent as determined by element-distribution mapping and visible-light spectroscopy, was probably derived from spinel-group minerals (e.g. chromite), the relics of which mark the presence of an ultramafic protolith. In contrast, the vein agate is composed of length-fast chalcedony, with subordinate quartzine and minor opaline silica, followed by drusy quartz. Its bluish colour appears to be related to scattering effects enhanced by elevated moganite contents (up to 46 wt.%). The observed mineral paragenesis suggests at least a two-stage evolution: (1) early listvenitization marked by carbonate-silica alteration of the host serpentinite together with concomitant sulfide precipitation; and (2) subsequent silicification producing chalcedony (agate) veins under low-temperature conditions, followed by possible dissolution of the earlier saddle dolomite. This evolution reflects complex fluid–rock interactions involving CO2-rich, Ca-bearing and later Si-rich fluids under fluctuating redox and pH conditions. Hence, the proposed crystallization sequence of the associated mineral assemblage is: sulfides (cobaltite+pyrite+enargite) → saddle dolomite → opal (lussatite) + Cr-smectite → chalcedony (agate). These data provide new insights into the genesis, colouration mechanisms and structural state of Cr-bearing opaline and chalcedonic silica in altered ultramafic terrains.