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23 - High throughput microRNAs profiling in cancers

from V - MicroRNAs in disease biology

Published online by Cambridge University Press:  22 August 2009

Muller Fabbri
Affiliation:
Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA
Ramiro Garzon
Affiliation:
Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA
Amelia Cimmino
Affiliation:
Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA
George Adrian Calin
Affiliation:
Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA
Carlo Maria Croce
Affiliation:
Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA
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Summary

Introduction

MicroRNAs are small noncoding RNAgenes (18–24 nucleotides in length) that have been identified in different organisms from the nematode C. elegans to humans (for reviews see Bartel, 2004; He and Hannon, 2004). Recently it has become more and more evident that microRNAs play important roles in regulating the translation and degradation of mRNAs through base pairing to perfectly (in plants) or partially (in mammals) complementary sites, mainly but not exclusively in the untranslated region (UTR) of the target mRNA (Lagos-Quintana et al., 2001; Lau et al., 2001; Lee and Ambros, 2001). MicroRNAs are initially transcribed by RNA polymerase II (pol II) as long primary transcripts called primary-miRNAs (pri-miRNAs). A double-stranded RNA-specific ribonuclease called Drosha is responsible for the processing of pri-miRNAs into hairpin RNAs of 70–100bp known as pre-miRNAs, which contain a two nucleotide 3′ overhang characteristic of RNase III cleavage products (Cullen, 2004). Pre-miRNAs are transported to the cytoplasm by the nuclear export factor exportin 5. Once in the cytoplasm pre-miRNAs are processed by a second, double-stranded specific ribonuclease III called Dicer in a 18–24 nucleotide duplex. The product of Dicer's cleavage is incorporated into a large protein complex called RISC (RNA-induced silencing complex), which includes as core components the Argonaute proteins (Ago1–4 in humans). One strand of the miRNA duplex remains stably associated with RISC and becomes the mature miRNA. The opposite strand, called passenger strand or miRNA, is discarded through two different mechanisms.

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  • High throughput microRNAs profiling in cancers
    • By Muller Fabbri, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Ramiro Garzon, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Amelia Cimmino, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, George Adrian Calin, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Carlo Maria Croce, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA
  • Edited by Krishnarao Appasani
  • Foreword by Sidney Altman, Victor R. Ambros
  • Book: MicroRNAs
  • Online publication: 22 August 2009
  • Chapter DOI: https://doi.org/10.1017/CBO9780511541766.026
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  • High throughput microRNAs profiling in cancers
    • By Muller Fabbri, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Ramiro Garzon, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Amelia Cimmino, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, George Adrian Calin, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Carlo Maria Croce, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA
  • Edited by Krishnarao Appasani
  • Foreword by Sidney Altman, Victor R. Ambros
  • Book: MicroRNAs
  • Online publication: 22 August 2009
  • Chapter DOI: https://doi.org/10.1017/CBO9780511541766.026
Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

  • High throughput microRNAs profiling in cancers
    • By Muller Fabbri, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Ramiro Garzon, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Amelia Cimmino, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, George Adrian Calin, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA, Carlo Maria Croce, Center for Human Cancer Genetics The Ohio State University Comprehensive Cancer Center 385L Comprehensive Cancer Center 410 West 10th Avenue Columbus, OH 43210 USA
  • Edited by Krishnarao Appasani
  • Foreword by Sidney Altman, Victor R. Ambros
  • Book: MicroRNAs
  • Online publication: 22 August 2009
  • Chapter DOI: https://doi.org/10.1017/CBO9780511541766.026
Available formats
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