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17 - Use of abstraction to support geoscientists' understanding and production of scientific artifacts

from Part V - Web services and scientific workflows

Published online by Cambridge University Press:  25 October 2011

Ann Q. Gates
Affiliation:
University of Texas at El Paso
Paulo Pinheiro da Silva
Affiliation:
University of Texas at El Paso
Leonardo Salayandia
Affiliation:
University of Texas at El Paso
Omar Ochoa
Affiliation:
University of Texas at El Paso
Aida Gandara
Affiliation:
University of Texas at El Paso
Nicholas Del Rio
Affiliation:
University of Texas at El Paso
G. Randy Keller
Affiliation:
University of Oklahoma
Chaitanya Baru
Affiliation:
University of California, San Diego
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Summary

Introduction

With advances in cyberinfrastructure (CI), scientists are able to solve more complex problems; in particular, CI assists in solutions that require collaboration, use of advanced instrumentation, discovery of knowledge resources, and distribution of work across a network of machines. The promise of CI is that it can impact scientific discovery and problem solving by providing the ability to access data collected from shared instruments, evaluate hypothesis by computationally intensive analysis, and retrieve results compiled by other scientists from around the world (Gil et al., 2007). Furthermore, CI-based techniques and methods support the integration, coordination, transformation, and visualization of data and other resources.

Because of the growing complexity of problems being solved by scientists with the use of CI, the use of abstraction is becoming more relevant in helping scientists work with complex processes. Abstraction is the notion of removing unnecessary details to support understanding. How information is viewed, i.e., the perspective of information, guides how abstraction can be used. For example, consider the description of an automobile. From the perspective of a valet, the color, make, and year of the automobile are sufficient to describe a car, and other details can be ignored; from the perspective of a mechanic, details about the engine are necessary. In addition, one can define different levels of abstraction by expanding the amount of detail presented, albeit the amount of detail included at any one level could vary depending on the need.

Type
Chapter
Information
Geoinformatics
Cyberinfrastructure for the Solid Earth Sciences
, pp. 266 - 284
Publisher: Cambridge University Press
Print publication year: 2011

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References

Altintas, I., Barney, O., and Jaeger-Frank, E. (2006). Provenance Collection Support in the Kepler Scientific Workflow System. Moreau, L. and Foster, I. T., eds. LNCS 4145. Berlin: Springer, pp. 118–132.Google Scholar
Deelman, E., Singh, G., Su, M.-H.et al. (2005). Pegasus: A framework for mapping complex scientific workflows onto distributed systems. Scientific Programming, 13(3): 219–237.CrossRefGoogle Scholar
Del Rio, N. and Pinheiro da Silva, P. (2007). Probe-It! Visualization support for provenance. In ISVC (2), pp. 732–741.
Freire, J., Silva, C. T., Callahan, S. P.et al. (2006). Managing rapidly-evolving scientific workflows. In International Provenance and Annotation Workshop, IPAW 2006. LNCS 4145, Berlin: Springer, pp. 10–18.Google Scholar
Furtado, V., Pinheiro da Silva, P., McGuinness, D. L.et al. (2007). Abstracting web agent proofs into human-level justifications. In Proceedings of the Twentieth International Florida Artificial Intelligence Research Society Conference, May 7–9, 2007, Key West, FL, USA, ed. Wilson, D. and Sutcliffe, G.. Menlo Park, CA: AAAI Press, pp. 80–85.Google Scholar
Gates, A. Q., Keller, G. R., Salayandia, L., Pinheiro da Silva, P., and Salcedo, F. (2007). The gravity data ontology: Laying the foundation for workflow-driven ontologies. In Proceedings of the Second International Conference on Geospatial Semantics (GeoS). LNCS 4853. Berlin: Springer, pp. 278–287.Google Scholar
Gil, Y., Ratnakar, V., Deelman, E., Spraragen, M., and Kim, J. (2006). Wings for Pegasus: A semantic approach to creating very large scientific workflows. Proceedings of the OWL: Experiences and Directions (OWLED-06), Athens, GA, USA, November 10–11, 2006.Google Scholar
Gil, Y., Deelman, E., Ellisman, M.et al. (2007). Examining the challenges of scientific workflows. Computer, 40(12): 24–32, doi:10.1109/MC.2007.421.CrossRefGoogle Scholar
Guarino, N. (1997). Semantic matching: Formal ontological distinctions for information organization, extraction, and integration. In Proceedings of SCIE'97 International Summer School on Information Extraction, pp. 139–170.CrossRef
Hole, J. A. (1992). Nonlinear high-resolution three-dimensional seismic travel time tomography. Journal of Geophysical Research, 97(B5): 6553–6562.CrossRefGoogle Scholar
Hole, J. A. and Zelt, B. C. (1995). 3-D finite difference reflection traveltimes. Geophysics, 121: 427–434.Google Scholar
Hole, J. A., Brocher, T. M., Klemperer, S. L.et al. (2000). Three-dimensional seismic velocity structure of the San Francisco Bay area. Journal of Geophysical Research, 105(B6): 13 859–13 874.CrossRefGoogle Scholar
Kim, J., Deelman, E., Gil, Y., Mehta, G., and Ratnakar, V. (2008). Provenance trails in the Wings/Pegasus system. Concurrency and Computation: Practice & Experience, 20(5): 587–597.CrossRefGoogle Scholar
Ludäscher, B., Altintas, I., Berkley, C.et al. (2006). Scientific workflow management and the Kepler system: Research articles. Concurrency and Computation: Practice & Experience, 18(10): 1039–1065.CrossRefGoogle Scholar
McGuinness, D. L. and Pinheiro da Silva, P., (2004). Explaining answers from the semantic web. Journal of Web Semantics, 1(4): 397–413.CrossRefGoogle Scholar
Oinn, T., Greenwood, M., Addis, M. J.et al. (2005). Taverna: Lessons in creating a workflow environment for the life sciences. Concurrency and Computation: Practice & Experience, 18: 1067–1100.CrossRefGoogle Scholar
Pinheiro da Silva, P., McGuinness, D. L., and Fikes, R. (2006). A proof markup language for semantic web services. Information Systems, 31(4–5): 381–395.CrossRefGoogle Scholar
Salayandia, L., Pinheiro da Silva, P., Gates, A. Q., and Salcedo, F. (2006). Workflow-driven ontologies: An earth sciences case study. In Proceedings of the 2nd IEEE International Conference on e-Science and Grid Computing. New York: IEEE, pp. 212–220.Google Scholar
Taylor, I. J., Deelman, E., and Gannon, D. B. (2006). Workflows for e-Science: Scientific Workflows for Grids. New York: Springer, 514pp.Google Scholar
Vidale, J. (1988). Finite-difference calculation of travel times. Bulletin of the Seismological Society of America, 78(6): 2062–2076.Google Scholar
Vidale, J. (1990). Finite-difference calculation of travel times in three dimensions. Geophysics, 55(5): 521–526.CrossRefGoogle Scholar
Zhao, J., Goble, C., Stevens, R., and Turi, D. (2008). Mining Taverna's semantic web of provenance. Concurrency and Computation: Practice & Experience, 20(5): 463–472.CrossRefGoogle Scholar

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