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This book is not meant to be read sequentially. The material is organized according to a modular structure with abundant cross-referencing and indexing to permit a variety of pathways through it.
Each chapter in Part I, Applications, is devoted to a particular technique: Fourier series, Fourier transform, etc. The chapters open with a section summarizing very briefly the basic relations and proceeds directly to show on a variety of examples how they are applied and how they “work.”
A fairly detailed exposition of the essential background of the various techniques is given in the chapters of Part II, Essential Tools. Other chapters here describe general concepts (e.g., Green's functions and analytic functions) that occur repeatedly elsewhere. The last chapter on matrices and finite-dimensional linear spaces is included mostly to introduce Part III, Some Advanced Tools. Here the general theory of linear spaces, generalized functions and linear operators provides a unified foundation to the various techniques of Parts I and II.
The book starts with some general remarks and introductory material in Part 0. Here the first chapter summarizes the basic equations of classical field theory to establish a connection between specific physical problems and the many examples of Part I in which, by and large, no explicit reference to physics is made. The last section of this chapter provides a very elementary introduction to the basic idea of eigenfunction expansion.
Even a cursory look at the table of contents of this book will reveal that the material is arranged in an unusual way, starting immediately with the application of techniques (Part I) which are justified and explained in greater detail in later chapters (Parts II and III). Indeed, the book is not meant to be read sequentially and I have not attempted to force the material into a sequential exposition. Rather, I have organized it as a series of modules through which each reader can fashion an individual pathway according to background, needs and interests.
The widespread availability of computers and symbolic manipulation packages has made mathematics relevant to many more people than in the past. A serious problem, however, remains the high “cost of entry” of mathematics. While some might argue that in a perfect world people would spend the time required to learn all the mathematics they might need before applying it, this is a utopia certainly, and probably also a misguided ideal as any user of mathematics – having gone through many cycles of learning and applying – can testify.
Hopefully, the modular structure of the book will serve a variety of users addressing different needs ranging from a quick impression of a mathematical tool to a fairly deep understanding of its basis and “inner workings.” The many cross-references, detailed index and table of contents will render possible a non-systematic “navigation” through the material.
We interpret a boundary-value problem arising in a cell growth model as a singular Sturm–Liouville problem that involves a functional differential equation of the pantograph type. We show that the probability density function of the cell growth model corresponds to the first eigenvalue and that there is a family of rapidly decaying eigenfunctions.
We present two-dimensional simulations of chemotactic self-propelled bacteria swimming ina viscous fluid. Self-propulsion is modelled by a couple of forces of same intensity andopposite direction applied on the rigid bacterial body and on an associated region in thefluid representing the flagellar bundle. The method for solving the fluid flow and themotion of the bacteria is based on a variational formulation written on the whole domain,strongly coupling the fluid and the rigid particle problems: rigid motion is enforced bypenalizing the strain rate tensor on the rigid domain, while incompressibility is treatedby duality. This model allows to achieve an accurate description of fluid motion andhydrodynamic interactions in moderate to concentrated active suspensions. A mesoscopicmodel is also used, in which the size of the bacteria is supposed to be much smaller thanthe elements of fluid: the perturbation of the fluid due to propulsion and motion of theswimmers is neglected, and the fluid is only subjected to the buoyant forcing induced bythe presence of the bacteria, which are denser than the fluid. Although this model doesnot accurately take into account hydrodynamic interactions, it is able to reproducecomplex collective dynamics observed in concentrated bacterial suspensions, such asbioconvection. From a mathematical point of view, both models lead to a minimizationproblem which is solved with a standard Finite Element Method. In order to ensurerobustness, a projection algorithm is used to deal with contacts between particles. Wealso reproduce chemotactic behaviour driven by oxygen: an advection-diffusion equation onthe oxygen concentration is solved in the fluid domain, with a source term accounting foroxygen consumption by the bacteria. The orientations of the individual bacteria aresubjected to random changes, with a frequency that depends on the surrounding oxygenconcentration, in order to favor the direction of the concentration gradient.
The question, how does an organism maintain balance? provides a unifying theme tointroduce undergraduate students to the use of mathematics and modeling techniques inbiological research. The availability of inexpensive high speed motion capture camerasmakes it possible to collect the precise and reliable data that facilitates thedevelopment of relevant mathematical models. An in–house laboratory component ensures thatstudents have the opportunity to directly compare prediction to observation and motivatesthe development of projects that push the boundaries of the subject. The projects, bytheir nature, readily lend themselves to the formation of inter–disciplinary studentresearch teams. Thus students have the opportunity to learn skills essential for successin today’s workplace including productive team work, critical thinking, problem solving,project management, and effective communication.