Andersson, L and Georges, M 2004. Domestic-animal genomics: deciphering the genetics of complex traits. Natural Revue Genetique 5, 202-212.
Barendse, W 2005. The transition from quantitative trait loci to diagnostic test in cattle and other livestock. Australian Journal of Experimental Agriculture 45, 831-836.
Barendse, W, Bunch, R, Thomas, M, Armitage, S, Baud, S and Donaldson, N 2004. The TG5 thyroglobulin gene test for a marbling quantitative trait loci evaluated in feedlot cattle. Australian Journal Experimental Agriculture 44, 669-674.
Barendse, W, Bunch, RJ and Harrison, BE 2005. The leptin C73T missense mutation is not associated with marbling and fatness traits in a large gene mapping experiment in Australian cattle. Animal Genetics 36, 86-88.
Barendse, W, Bunch, RJ, Harrison, BE and Thomas, MB 2006. The growth hormone GH1:c.457C>G mutation is associated with relative fat distribution in intra-muscular and rump fat in a large sample of Australian feedlot cattle. Animal Genetics 37, 211-214.
Bernard, C, Degrelle, S, Ollier, S, Campion, E, Cassar-Malek, I, Charpigny, G, Dhorne-Pollet, S, Hue, I, Hocquette, JF, Le Provost, F, Leroux, C, Piumi, F, Roland, G, Uzbekova, S, Zalachas, E and Martin, P 2005. A cDNA macro-array resource for gene expression profiling in ruminant tissues involved in reproduction and production (milk and beef) traits. Journal of Physiology and Pharmacology 56, (suppl. 3) .
Bernard, C, Cassar-Malek, I, Hocquette, JF and collaborators, 2006a. Genomic marker for meat tenderness. .
Bernard, C, Cassar-Malek, I, Dubroeucq, H, Renand, G and Hocquette, JF 2006b. Gene expression associated with beef sensory qualities. Book of abstracts of the 57th annual meeting of the European Association for Animal Production, , Antalya, Turkey, p. 46..
Bouley, J, Chambon, C and Picard, B 2004a. Mapping of proteins in bovine skeletal muscle using two-dimensional gel electrophoresis and mass spectrometry. Proteomics 4, 1811-1824.
Bouley, J, Meunier, B, Culioli, J and Picard, B 2004b. Analyse protéomique du muscle de bovin appliquée à la recherche de marqueurs de la tendreté de la viande. Rencontres Recherches Ruminants 11, 87-89.
Bouley, J, Meunier, B, Chambon, C, De Smet, S, Hocquette, JF and Picard, B 2005. Proteomic analysis of bovine skeletal muscle hypertrophy. Proteomics 5, 490-500.
Brazma, A, Hingamp, P, Quackenbush, J, Sherlock, G, Spellman, P, Stoeckert, C, Aach, J, Ansorge, W, Ball, CA, Causton, HC, Gaasterland, T, Glenisson, P, Holstege, FCP, Kim, IF, Markowitz, V, Matese, JC, Parkinson, H, Robinson, A, Sarkans, U, Schulze-Kremer, S, Stewart, J, Taylor, R, Vilo, J and Vingron, M 2001. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genetics 29, 365-371.
Buchanan, FC, Fitzsimmons, CJ, van Kessel, AG, Thue, TD, Winkelman-Sim, DC and Schmutz, S 2002. Association of a missense mutation in the bovine leptin gene with carcass fat content and leptin mRNA levels. Genetics Selection Evolution 34, 105-116.
Bucher, EA, De La Brousse, FC and Emerson, CP Jr 1989. Developmental and muscle specific regulation of avian fast skeletal troponin T isoform expression by mRNA splicing. Journal of Biological Chemistry 264, 12482-12491.
Byrne, KA, Wang, YH, Lehnert, SA, Harper, GS, McWilliam, SM, Bruce, HL and Reverter, A 2005. Gene expression profiling of muscle tissue in Brahman steers during nutritional restriction. Journal of Animal Science 83, 1-12.
Cagnazzo, M, te Pas, MF, Priem, J, de Wit, AA, Pool, MH, Davoli, R and Russo, V 2006. Comparison of prenatal muscle tissue expression profiles of two pig breeds differing in muscle characteristics. Journal of Animal Science 84, 1-10.
Canales, RD, Luo, Y, Willey, JC, Austermiller, B, Barbacioru, CC, Boysen, C, Hunkapiller, K, Jensen, RV, Knight, CR, Lee, KY, Ma, Y, Maqsodi, B, Papallo, A, Peters, EH, Poulter, K, Ruppel, PL, Samaha, RR, Shi, L, Yang, W, Zhang, L and Goodsaid, FM 2006. Evaluation of DNA microarray results with quantitative gene expression platforms. Nature Biotechnology 24, 1115-1122.
Casas, E, White, SN, Wheeler, TL, Shackelford, SD, Koohmaraie, M, Riley, DG, Chase, CC, Johnson, DD and Smith, TPL 2006. Effects of calpastatin and mu-calpain markers in beef cattle on tenderness traits. Journal of Animal Science 84, 520-525.
Cassar-Malek, I, Bernard, C, Jurie, C, Barnola, I, Gentès, G, Dozias, D, Micol, D and Hocquette, JF 2005a. Pasture-based beef production systems may influence muscle characteristics and gene expression. In (eds Hocquette, JF and Gigli, S), EAAP Publication 112, pp. 385-390. Wageningen Academic Publishers, Wageningen, The Netherlands.
Cassar-Malek, I, Passelaigue, F, Bernard, C, Gautier, P and Hocquette, JFTarget genes of myostatin loss-of-function in bovine foetuses. 2005b. Meeting of the COST action 925, , Volos, Greece. .
Childs, KD, Goad, DW, Allan, MF, Pomp, D, Krehbiel, C, Geisert, RD, Morgan, JB and Malayer, JR 2002. Differential expression of NAT1 translational repressor during development of bovine intramuscular adipocytes. Physiological Genomics 10, 49-56.
Cho, KK, Han, KH, Kang, SK, Lee, SH and Choi, YJ 2002. Applications of cDNA microarray in ruminants. The 4th Korea-Japan Joint Symposium on Rumen Metabolism and Physiology, , Jeju, Korea, 11 pp. Available: http://rumen.snu.ac.kr/symposium/Lectures/Cho_KKpdf. Accessed: 10 December 2004..
Cox, B, Kislinger, T and Emili, A 2005. Integrating gene and protein expression data: pattern analysis and profile mining. Methods 35, 303-314.
Dalbies-Tran, R and Mermillod, P 2003. Use of heterologous complementary DNA array screening to analyse bovine oocyte transcriptome and its evolution during in vitro maturation. Biology of Reproduction 68, 252-261.
Dekkers, JCM 2004. Commercial application of marker- and gene-assisted selection in livestock: Strategies and lessons. Journal of Animal Science 82, E313-E328.
Diez-Tascón, C, Keane, OM, Wilson, T, Zadissa, A, Hyndman, DL, Baird, DB, McEwan, JC and Crawford, AM 2005. Microarray analysis of selection lines from outbred populations to identify genes involved with nematode parasite resistance in sheep. Physiological Genomics 21, 59-69.
Donaldson, L, Vuocolo, T, Gray, C, Strandberg, Y, Reverter, A, McWilliam, S, Wang, Y, Byrne, K and Tellam, R 2005. Construction and validation of a bovine innate immune microarray. BMC Genomics 6, 135.
Dorroch, U, Goldammer, T, Brunner, RM, Kata, SR, Kühn, C, Womack, JE and Schwerin, M 2001. Isolation and characterization of hepatic and intestinal expressed sequence tags potentially involved in trait differentiation between cows of different metabolic type. Mammalian Genome 12, 528-537.
Dransfield, E, Martin, JF, Bauchart, D, Abouelkaram, S, Lepetit, J, Culioli, J, Jurie, C and Picard, B 2003. Meat quality and composition of three muscles from French cull cows and young bulls. Animal Science 76, 387-399.
Drinkwater, RD, Li, Y, Lenane, I, Davis, GP, Shorthose, RP, Harrison, BE, Richardson, K, Ferguson, D, Stevenson, R, Renaud, J, Loxton, I, Hawken, RJ, Thomas, MB, Newman, S, Hetzel, DJS and Barendse, W 2006. Detecting quantitative trait loci affecting beef tenderness on bovine chromosome 7 near calpastatin and lysyl oxidase. Australian Journal of Experimental Agriculture 46, 159-164.
Drobyshev, AL, Hrabé de Anegelis, M and Beckers, J 2003. Artefacts and reliability of DNA microarrays expression profiling data. Current Genomics 4, 615-621.
Eggen, A and Hocquette, JF 2004. Genomic approaches to economic trait loci and tissue expression profiling: application to muscle biochemistry and beef quality. Meat Science 66, 1-9.
Elsik, CG, Antoniou, E., Fahrenkrug, SC, Reecy, JM, Wolfinger, RD and Taylor, JF 2006. A bovine whole genome long oligonucleotide expression array. 30th international conference on animal genetics, Porto Seguro, Brazil, , p. 68.
Everts-van der Wind, A, Larkin, DM, Green, CA, Elliott, JS, Olmstead, CA, Chiu, R, Schein, JE, Marra, MA, Womack, JE and Lewin, HA 2005. A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution. Proceedings of the National Academy of Sciences of the United States of America 102, 18526-18531.
Fadiel, A, Anidi, I and Eichenbaum, KD 2005. Farm animal genomics and informatics: an update. Nucleic Acids Research 33, 6308-6318.
Garnier, JP, Klont, R and Plastow, G 2003. The potential impact of current animal research on the meat industry and consumer attitudes towards meat. Meat Science 63, 79-88.
Geay, Y, Bauchart, D, Hocquette, JF and Culioli, J 2001. Effect of nutritional factors on biochemical, structural and metabolic characteristics of muscles in ruminants; consequences on dietetic value and sensorial qualities of meat. Reproduction Nutrition Development 41, 1-26, .
Hanai, T, Hamada, H and Okamoto, M 2006. Application of bioinformatics for DNA microarray data to bioscience, bioengineering and medical fields. Journal of Biosciences and Bioengineering 101, 377-384.
Harlizius, B, van Wijk, R and Merks, JWM 2004. Genomics for food safety and sustainable animal production. Journal of Biotechnology 113, 33-42.
Hawken, RJ, Barris, WC, McWilliam, SM and Dalrymple, BP 2004. An interactive bovine in silico SNP database (IBISS). Mammalian Genome 15, 819-827.
Henderson, D, Thomas, M and Da, Y 2005. Conference review: bovine genomics from academia to industry. Comparative Functional Genomics 6, 174-180.
Herath, CB, Shiojima, S, Ishiwata, H, Katsuma, S, Kadowaki, T, Ushizawa, K, Imai, K, Takahashi, T, Hirasawa, A, Tsujimoto, G and Hashizume, K 2004. Pregnancy-associated changes in genome-wide gene expression profiles in the liver of cow throughout pregnancy. Biochemical and Biophysical Research Communications 16, 666-680.
Hocquette, JF 2005. Where are we in genomics? Journal of Physiology and Pharmacology 56, (suppl. 3) 37-70.
Hocquette, JF and Gigli, S 2005. The challenge of quality. In (ed. Hocquette, JF and Gigli, S), , pp. 13-22. Wageningen Academic Publishers, Wageningen, The Netherlands.
Hocquette, JF, Ortigues-Marty, I, Pethick, D, Herpin, P and Fernandez, X 1998. Nutritional and hormonal regulation of energy metabolism in skeletal muscles of meat-producing animals. Livestock Production Science 56, 115-143.
Hocquette, JF, Cassar-Malek, I, Listrat, A and Picard, B 2005. Current genomics in cattle and application to beef quality. In (ed. Hocquette, JF and Gigli, S), , pp. 65-79. Wageningen Academic Publishers, Wageningen, The Netherlands.
Hocquette, JF, Renand, G, Levéziel, H, Picard, B and Cassar-Malek, I 2006. The potential benefits of genetics and genomics to improve beef quality – a review. Animal Science Papers and Reports 24, 173-189.
Hu, J, Mungall, C, Law, A, Papworth, R, Nelson, JP, Brown, A, Simpson, I, Leckie, S, Burt, DW, Hillyard, AL and Archibald, AL 2001. The ARKdb: genome databases for farmed and other animals. Nucleic Acids Research 29, 106-110.
Jensen, K, Talbot, R, Paxton, E, Waddington, D and Glass, EJ 2006. Development and validation of a bovine macrophage specific cDNA microarray. BMC Genomics 7, 224.
Jeon, JT, Lee, JH, Kim, KS, Park, CK and Oh, SJ 2006. Application of DNA markers in animal industries. Australian Journal of Experimental Agriculture 46, 173-182.
Jiang, ZH, Kunej, T, Michal, JJ, Gaskins, CT, Reeves, JJ, Busboom, JR, Dovc, P and Wright, RW 2005. Significant associations of the mitochondrial transcription factor A promoter polymorphisms with marbling and subcutaneous fat depth in Wagyu × Limousin F-2 crosses. Biochemical and Biophysical Research Communications 334, 516-523.
Jin, JP, Wang, J and Ogut, O 1998. Developmentally regulated muscle type-specific alternative splicing of the COOH-terminal variable region of fast skeletal muscle troponin T and an aberrant splicing pathway to encode a mutant COOH-terminus. Biochemical and Biophysical Research Communications 242, 540-544.
Kononoff, PJ, Deobald, HM, Stewart, EL, Laycock, AD and Marquess, FLS 2005. The effect of a leptin single nucleotide polymorphism on quality grade, yield grade, and carcass weight of beef cattle. Journal of Animal Science 83, 927-932.
Kühn, Ch, Leveziel, H, Renand, G, Goldammer, T, Schwerin, M and Williams, J 2005. Genetic markers for beef quality. In (eds Hocquette, JF and Gigli, S), , pp. 23-32. Wageningen Academic Publishers, Wageningen, The Netherlands.
Le Provost, F, Lépingle, A and Martin, P 1996. A survey of the goat genome transcribed in the lactating mammary gland. Mammalian Genome 7, 657-666.
Lehnert, SA, Wang, YH and Byrne, KA 2004. Development and application of a bovine cDNA microarray for expression profiling of muscle and adipose tissue. Australian Journal Experimental Agriculture 44, 1127-1133.
Lehnert, SA, Byrne, KA, Reverter, A, Nattrass, G, Greenwood, PL, Wang, YH, Hudson, NJ and Harper, GS 2006. Gene expression profiling of bovine longissimus muscle in response and during recovery from severe chronic under nutrition. Journal of Animal Science, .
Lin, CS and Hsu, CW 2005. Differentially transcribed genes in skeletal muscle of Duroc and Taoyuan pigs. Journal of Animal Science 83, 2075-2086.
Loor, JJ, Dann, HM, Everts, RE, Oliveira, R, Green, CA, Guretzky, NA, Rodriguez-Zas, SL, Lewin, HA and Drackley, JK 2005. Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function. Physiological Genomics 23, 217-226.
Mannen, H, Kojima, T, Oyama, K, Mukai, F, Ishida, T and Tsuji, S 1998. Effect of mitochondrial DNA variation on carcass traits of Japanese Black cattle. Journal of Animal Science 76, 36-41.
Mannen, H, Morimoto, M, Oyama, K, Mukai, F and Tsuji, S 2003. Identification of mitochondrial DNA substitutions related to meat quality in Japanese Black cattle. Journal of Animal Science 81, 68-73.
McCarthy, FM, Wang, N, Magee, GB, Nanduri, B, Lawrence, ML, Camon, EB, Barrell, DG, Hill, DP, Dolan, ME, Williams, WP, Luthe, DS, Bridges, SM and Burgess, SC 2006. AgBase: a functional genomics resource for agriculture. BMC Genomics 7, 229.
McGuire, K and Glass, EJ 2005. The expanding role of microarrays in the investigation of macrophage responses to pathogens. Veterinary Immunology and Immunopathology 105, 259-275.
Meade, KG, Gormley, E, Park, SD, Fitzsimons, T, Rosa, GJ, Costello, E, Keane, J, Coussens, PM and MacHugh, DE 2006. Gene expression profiling of peripheral blood mononuclear cells (PBMC) from Mycobacterium bovis infected cattle after in vitro antigenic stimulation with purified protein derivative of tuberculin (PPD). Veterinary Immunology Immunopathology 113, 73-89.
Meunier, B, Bouley, J, Piec, I, Bernard, C, Picard, B and Hocquette, JF 2005. Data analysis methods for detection of differential protein expression in two-dimensional gel electrophoresis. Analytical Biochemistry 340, 226-230.
Meunier, B, Dumas, E, Piec, I, Hébraud, M, Béchet, D and Hocquette, JF 2007. Assessment of hierarchical clustering methodologies for proteomic data mining. Journal of Proteome Research, .
Michal, JJ, Zhang, ZW, Gaskins, CT and Jiang, Z 2006. The bovine fatty acid binding protein 4 gene is significantly associated with marbling and subcutaneous fat depth in Wagyu × Limousin F2 crosses. Animal Genetics 37, 400-402.
Moody, DE, Rosa, AJ and Reecy, JM 2003. Current status of livestock DNA microarrays. AgBiotechNet 5, 1-8.
Morris, CA, Cullen, NG, Hickey, SM, Dobbie, PM, Veenvliet, BA, Manley, TR, Pitchford, WS, Kruk, ZA, Bottema, CDK and Wilson, T 2006. Genotypic effects of calpain 1 and calpastatin on the tenderness of cooked M. longissimus dorsi steaks from Jersey × Limousin, Angus and Herefrod-cross cattle. Animal Genetics 37, 411-414.
Muroya, S, Nakajima, I and Chikuni, K 2003. Amino acid sequences of multiple fast and slow troponin T isoforms expressed in adult bovine skeletal muscles. Journal of Animal Science 81, 1185-1192.
Murphy, D 2002. Gene expression studies using microarrays: principles, problems, and prospects. Advances in Physiology Education 2, 256-270.
Nkrumah, JD, Li, C, Basarab, JB, Guercio, S, Meng, Y, Murdoch, B, Hansen, C and Moore, SS 2004. Association of a single nucleotide polymorphism in the bovine leptin gene with feed intake, feed efficiency, growth, feeding behaviour, carcass quality and body composition. Canadian Journal of Animal Science 84, 211-219.
Nkrumah, JD, Li, C, Yu, J, Hansen, C, Keisler, DH and Moore, SS 2005. Polymorphisms in the bovine leptin promoter associated with serum leptin concentration, growth, feed intake, feeding behavior, and measures of carcass merit. Journal of Animal Science 83, 20-28.
Oishi, M, Taniguchi, Y, Nishimura, K, Yamada, T and Sasaki, Y 2000. Characterisation of gene expression in bovine adipose tissue before and alter fattening. Animal Genetics 31, 166-170.
Page, BT, Casas, E, Heaton, MP, Cullen, NG, Hyndman, DL, Morris, CA, Crawford, AM, Wheeler, TL, Koohmaraie, M, Keele, JW and Smith, TPL 2002. Evaluation of single-nucleotide polymorphisms in CAPN1 for association with meat tenderness in cattle. Journal of Animal Science 80, 3077-3085.
Page, BT, Casas, E, Quaas, RL, Thallman, RM, Wheeler, TL, Shackelford, SD, Kochmaraie, M, White, SN, Bennett, GL, Keele, JW, Dikeman, ME and Smith, TPL 2004. Association of markers in the bovine CAPN1 gene with meat tenderness in large crossbred populations that sample influential industry sires. Journal of Animal Science 8, 3474-3481.
Pfister-Genskow, M, Myers, C, Childs, LA, Lacson, JC, Patterson, T, Betthauser, JM, Goueleke, PJ, Koppang, RW, Lange, G, Fisher, P, Watt, SR, Forsberg, EJ, Zheng, Y, Leno, GH, Schultz, RM, Liu, B, Chetia, C, Yang, X, Hoeschele, I and Eilertsen, KJ 2005. Identification of differentially expressed genes in individual bovine preimplantation embryos produced by nuclear transfer: Improper reprogramming of genes required for development. Biology of Reproduction 72, 546-555.
Picard, B, Lefaucheur, L, Berri, C and Duclos, MJ 2002. Muscle fibre ontogenesis in farm animal species. Reproduction Nutrition Development 42, 415-431.
Picard, B, Bouley, J, Cassar-Malek, I, Bernard, C, Renand, G and Hocquette, JF 2005. Proteomics applied to the analysis of bovine muscle hypertrophy. In (eds Hocquette, JF and Gigli, S), , pp. 379-384. Wageningen Academic Publishers, Wageningen, The Netherlands.
Plastow, GS, Carrion, D, Gil, M, Garcia-Regueiro, JA, Furnols, MFI, Gispert, M, Oliver, MA, Velarde, A, Guardia, MD, Hortos, M, Rius, MA, Sarraga, C, Diaz, I, Valero, A, Sosnicki, A, Klont, R, Dornan, S, Wilkinson, JM, Evans, G, Sargent, C, Davey, G, Connolly, D, Houeix, B, Maltin, CM, Hayes, HE, Anandavijayan, V, Foury, A, Geverink, N, Cairns, M, Tilley, RE, Mormede, P and Blott, SC 2005. Quality pork genes and meat production. Meat Science 70, 409-421, .
Pollak, EJ 2005. Application and impact of new genetic technologies on beef cattle breeding: a ‘real world’ perspective. Australian Journal of Experimental Agriculture 45, 739-748.
Potts, JK, Echternkamp, SE, Smith, TPL and Reecy, JM 2003. Characterization of gene expression in double-muscled and normal-muscled bovine embryos. Animal Genetics 34, 438-444.
Reecy, JM, Spurlock, DM and Stahl, CH 2006. Gene expression profiling: insights into skeletal muscle growth and development. Journal of Animal Science 84, (suppl E) 150-154.
Renand, G, Larzul, C, Le Bihan-Duval, E and Le Roy, P 2003. L'amélioration génétique de la qualité de la viande dans les différentes espèces: situation actuelle et perspectives à court et moyen terme. INRA Productions Animales 16, 159-173.
Renard, JP, Lewin, HA, Yang, J, Hernandez, A, Sandra, O, Everts, RE and Hue, IE 2004a. Endometrium ESTs (bcbp). http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=Pager&DB=nucleotide. Accessed. 22–23 March 2005.
Reverter, A, Byrne, KA, Bruce, HL, Wang, YH, Dalrymple, BP and Lehnert, SA 2003. Mixture model-based cluster analysis of DNA microarray gene expression data on Brahman and Brahman composite steers fed high-, medium-, and low-quality diets. Journal of Animal Science 81, 1900-1910.
Reverter, A, Barris, W, Moreno-Sánchez, N, McWilliam, S, Wang, YH, Harper, GS, Lehnert, SA and Dalrymple, BP 2005. Construction of gene interaction and regulatory networks in bovine skeletal muscle from expression data. Australian Journal of Experimental Agriculture 45, 821-829.
Reverter, A, Hudson, NJ, Wang, Y, Tan, SH, Barris, W, Byrne, KA, McWilliam, SM, Bottema, CD, Kister, A, Greenwood, PL, Harper, GS, Lehnert, SA and Dalrymple, BP 2006. A gene co-expression network for bovine skeletal muscle inferred from microarray data. Physiological Genomics, .
Rincker, CB, Pyatt, NA, Berger, LL and Faulkner, DB 2006. Relationship among GeneSTAR marbling marker, intramuscular fat deposition, and expected progeny differences in early weaned Simmental steers. Journal of Animal Science 84, 686-693.
Schenkel, FS, Miller, SP, Ye, X, Moore, SS, Nkrumah, JD, Li, C, Yu, J, Mandell, IB, Wilton, JW and Williams, JL 2005. Association of single nucleotide polymorphisms in the leptin gene with carcass and meat quality traits of beef cattle. Journal of Animal Science 83, 2009-2020.
Schenkel, FS, Miller, JR, Jiang, S, Mandell, IB, Ye, X, Li, H and Wilton, JW 2006. Association of a single nucleotide polymorphism in the calpastatin gene with carcass and meat quality traits of beef cattle. Journal of Animal Science 84, 291-299.
Schlee, P, Graml, R, Rottmann, O and Pirchner, F 1994. Influence of growth-hormone genotypes on breeding values of Simmental bulls. Journal of Animal Breeding and Genetics 111, 253-256.
Shackelford, SD, Wheeler, TL and Koohmaraie, M 1995. Relationship between shear force and trained sensory panel tenderness ratings of 10 major muscles from Bos indicus and Bos taurus cattle. Journal of Animal Science 73, 3333-3340.
Shields, R 2006. The emperor's new clothes revisited. Trends in Genetics 22, 463.
Sievertzon, M, Nilsson, P and Lundeberg, J 2006. Improving reliability and performance of DNA microarrays. Expert Review of Molecular Diagnostics 6, 481-492.
Smith, SL, Everts, RE, Tian, XC, Du, F, Sung, LY, Rodriguez-Zas, SL, Jeong, BS, Renard, JP, Lewin, HA and Yang, X 2005. Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. Proceedings of the National Academy of Sciences of the United States of America 102, 17582-17587.
Smith, TPL, Grosse, WM, Freking, BA, Roberts, AJ, Stone, RT, Casas, E, Wray, JE, White, J, Cho, J, Fahrenkrug, JC, Bennett, GL, Heaton, MP, Laegreid, WW, Rohrer, GA, Chitko-McKown, CG, Pertea, G, Holt, I, Karamycheva, S, Liang, F, Quackenbush, J and Keele, JW 2001. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Genome Research 11, 626-630.
Smith, TPL, Thallman, RM, Casas, E, Shackelford, SD, Wheeler, TL and Koohmaraie, M 2003. Theory and application of genome-based approaches to improve the quality and value of beef. Outlook on Agriculture 32, 253-265.
Somers, J, Smith, C, Donnison, M, Wells, DN, Henderson, H, McLeay, L and Pfeffer, PL 2006. Gene expression profiling of individual bovine nuclear transfer blastocysts. Reproduction 131, 1073-1084.
Steelman, CA, Recknor, JC, Nettleton, D and Reecy, JM 2006. Transcriptional profiling of myostatin-knockout mice implicates Wnt signaling in postnatal skeletal muscle growth and hypertrophy. FASEB Journal 20, 580-582.
Suchyta, SP, Sipkovsky, S, Kruska, R, Jeffers, A, McNulty, A, Coussens, MJ, Tempelman, RJ, Halgren, RJ, Saama, PM, Bauman, DE, Boisclair, YR, Burton, JL, Collier, RJ, DePeters, EJ, Ferris, TA, Lucy, MC, McGuire, MA, Medrano, JF, Overton, TR, Smith, TP, Smith, GW, Sonstegard, TS, Spain, JN, Spiers, DE, Yao, J and Coussens, PM 2003. Development and testing of a high-density cDNA microarray resource for cattle. Physiological Genomics 15, 158-164.
Sudre, K, Leroux, C, Piétu, G, Cassar-Malek, I, Petit, E, Listrat, A, Auffray, C, Picard, B, Martin, P and Hocquette, JF 2003. Transcriptome analysis of two bovine muscles during ontogenesis. Journal of Biological Chemistry 133, 745-756.
Sudre, K, Cassar-Malek, I, Listrat, A, Ueda, Y, Leroux, C, Jurie, C, Auffray, C, Renand, G, Martin, P and Hocquette, JF 2005a. Biochemical and transcriptomic analyses of two bovine skeletal muscles in Charolais bulls divergently selected for muscle growth. Meat Science 70, 267-277.
Sudre, K, Leroux, C, Cassar-Malek, I and Hocquette, JF 2005b. A collection of bovine cDNA probes for gene expression profiling in muscle. Molecular and Cellular Probes 19, 61-70.
Taylor, CF, Paton, NW, Garwood, KL, Kirby, PD, Stead, DA, Yin, Z, Deutsch, EW, Selway, L, Walker, J, Riba-Garcia, I, Mohammed, S, Deery, MJ, Howard, JA, Dunkley, T, Aebersold, R, Kell, DB, Lilley, KS, Roepstorff, P, Yates, JF, Brass, A, Brown, AJ, Cash, P, Gaskell, SJ, Hubbard, SJ and Oliver, SG 2003. A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nature Biotechnology 21, 247-254.
Thaller, G, Kühn, C, Winter, A, Ewald, A, Bellmann, O, Wegner, J, Zühlke, H and Fries, R 2003. DGAT1, a new positional and functional candidate gene for intramuscular fat deposition in cattle. Animal Genetics 34, 354-357.
Tuggle, CK, Dekkers, JC and Reecy, JM 2006. Integration of structural and functional genomics. Animal Genetics 37, (suppl 1) 1-6.
Wang, YH, Byrne, KA, Reverter, A, Harper, GS, Taniguchi, M, McWilliam, SM, Mannen, H, Oyama, K and Lehnert, SA 2005a. Transcriptional profiling of skeletal muscle tissue from two breeds of cattle. Mammalian Genome 16, 201-221.
Wang, YH, Reverter, A, Mannen, H, Taniguchi, M, Harper, GS, Oyama, K., Byrne, KA, Oka, A., Tsuji, S and Lehnert, SA 2005b. Transcriptional profiling of adult muscle in Japanese Black Cattle to identify genes involved with the development of intramuscular fat. Australian Journal of Experimental Agriculture 45, 809-820.
Weckwerth, W, Wenzel, K and Fiehn, O 2004b. Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks. Proteomics 4, 78-83.
White, SN, Casas, E, Wheeler, TL, Shackelford, SD, Koohmaraie, M, Riley, DG, Chase, CC Jr, Johnson, DD, Keele, JW and Smith, TPL 2005. A new single nucleotide polymorphisms in CAPN1 extends the current tenderness marker test to include cattle of Bos indicus, Bos taurus, and crossbred descent. Journal of Animal Science 83, 2001-2008.
Womack, JE 2006. The impact of sequencing the bovine genome. Australian Journal of Experimental Agriculture 46, 151-153.