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JO Hill & JC Peters (1998) Environmental contributions to the obesity epidemic. Science
2 PJ Turnbaugh & JI Gordon (2009) The core gut microbiome, energy balance and obesity. J Physiol 587, 4153–4158.
3 MA Hildebrandt , C Hoffmann , SA Sherrill-Mix , et al. (2009) High-fat diet determines the composition of the murine gut microbiome independently of obesity. Gastroenterology 137, 1716–1724.e1–2.
GD Wu , J Chen , C Hoffmann , et al. (2011) Linking long-term dietary patterns with gut microbial enterotypes. Science
R Jumpertz , DS Le , PJ Turnbaugh , et al. (2011) Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. Am J Clin Nutr
6 RE Ley , PJ Turnbaugh , S Klein , et al. (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022–1023.
7 S Brugman , FA Klatter , JT Visser , et al. (2006) Antibiotic treatment partially protects against type 1 diabetes in the Bio-Breeding diabetes-prone rat. Is the gut flora involved in the development of type 1 diabetes? Diabetologia 49, 2105–2108.
8 CB de La Serre , CL Ellis , J Lee , et al. (2010) Propensity to high-fat diet-induced obesity in rats is associated with changes in the gut microbiota and gut inflammation. Am J Physiol Gastrointest Liver Physiol 299, G440–G448.
11 M Million , M Maraninchi , M Henry , et al. (2012) Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii. Int J Obes (Lond) 36, 817–825.
J Qin , Y Li , Z Cai , et al. (2012) A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature
H Zhang , JK DiBaise , A Zuccolo , et al. (2009) Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci U S A
T Arora , S Singh & RK Sharma (2013) Probiotics: interaction with gut microbiome and antiobesity potential. Nutrition
A Tremblay , J Sevigny & C Leblanc (1983) The reproducibility of a 3-day dietary record. Nutr Res
JB Weir (1949) New methods for calculating metabolic rate with special reference to protein metabolism. J Physiol
33 JA Frank , CI Reich , S Sharma , et al. (2008) Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol 74, 2461–2470.
34 M Hamady , JJ Walker , JK Harris , et al. (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5, 235–237.
35 JG Caporaso , J Kuczynski , J Stombaugh , et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7, 335–336.
36 T Ahlroos & S Tynkkynen (2009) Quantitative strain-specific detection of Lactobacillus rhamnosus GG in human faecal samples by real-time PCR. J Appl Microbiol 106, 506–514.
BM Corcoran , C Stanton , GF Fitzgerald , et al. (2005) Survival of probiotic Lactobacilli in acidic environments is enhanced in the presence of metabolizable sugars. Appl Environ Microbiol
E Doucet , P Imbeault , N Almeras , et al. (1999) Physical activity and low-fat diet: is it enough to maintain weight stability in the reduced-obese individual following weight loss by drug therapy and energy restriction?
40 E Pérusse-Lachance , P Brassard , JP Chaput , et al. (2013) Sex differences in the effects of mental work and moderate-intensity physical activity on energy intake in young adults. ISRN Nutr 2013, 1–6.
S Mueller , K Saunier , C Hanisch , et al. (2006) Differences in faecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study. Appl Environ Microbiol
42 M Arumugam , J Raes , E Pelletier , et al. (2011) Enterotypes of the human gut microbiome. Nature 473, 174–180.
43 D Aguirre de Carcer , PO Cuiv , T Wang , et al. (2011) Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon. ISME J 5, 801–809.
44 RE Ley (2010) Obesity and the human microbiome. Curr Opin Gastroenterol 26, 5–11.
45 Y Ravussin , O Koren , A Spor , et al. (2012) Responses of gut microbiota to diet composition and weight loss in lean and obese mice. Obesity (Silver Spring) 20, 738–747.
46 F Backhed , H Ding , T Wang , et al. (2004) The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci U S A 101, 15718–15723.
47 X Zhang , D Shen , Z Fang , et al. (2013) Human gut microbiota changes reveal the progression of glucose intolerance. PLoS ONE 8, 0071108.
48 P Louis & HJ Flint (2009) Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine. FEMS Microbiol Lett 294, 1–8.
52 RL Leibel , M Rosenbaum & J Hirsch (1995) Changes in energy expenditure resulting from altered body weight. N Engl J Med 332, 621–628.
E Doucet , S St Pierre , N Almeras , et al. (2000) Changes in energy expenditure and substrate oxidation resulting from weight loss in obese men and women: is there an important contribution of leptin?
J Clin Endocrinol Metab
54 E Doucet , P Imbeault , S St-Pierre , et al. (2000) Appetite after weight loss by energy restriction and a low-fat diet-exercise follow-up. Int J Obes Relat Metab Disord 24, 906–914.