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5AJ Macpherson & NL Harris (2004) Interactions between comensal intestinal bacteria and the immune system. Nat Rev Immunol 4, 478–485.
6JS Frick , K Schenk , M Quitadamo , et al. (2007) Lactobacillus fermentum attenuates the proinflammatory effect of Yersinia enterocolitica on human epithelial cells. Inflamm Bowel Dis 13, 83–90.
7McFarland (2006) Meta-analysis of probiotics for the prevention of antibiotic associated diarrhea and the treatment of Clostridium difficile disease. Am J Gastroenterol 101, 812–822.
9AC Ouwehand , S Salminen & E Isolauri (2002) Probiotics: an overview of beneficial effects. Antonie van Leeuwenhoek 82, 279–289.
12HS Lye , CY Kuan , JA Ewe , et al. (2009) The improvement of hypertension by probiotics: effects on cholesterol, diabetes, renin, and phytoestrogens. Int J Mol Sci 10, 3755–3775.
14GA Woodard , B Encarnacion , JR Downey , et al. (2009) Probiotics improve outcomes after Roux-en-Y gastric bypass surgery: a prospective randomized trial. J Gastrointest Surg 13, 1198–1204.
15B Karska-Wysocki , M Bazo & W Smoragiewicz (2010) Antibacterial activity of Lactobacillus acidophilus and Lactobacillus casei against methicillin-resistant Staphylococcus aureus (MRSA). Microbiol Res 165, 674–686.
20NT Williams (2010) Probiotics. Am J Health Syst Pharm 67, 449–458.
22Z Sun , W Liu , W Gao , et al. (2010) Identification and characterization of the dominant lactic acid bacteria from kurut: the naturally fermented yak milk in Qinghai, China. J Gen Appl Microbiol 56, 1–10.
23F Lopitz-Otsoa , A Rementeria , N Elguezabal , et al. (2006) Kefir: a symbiotic yeasts-bacteria community with alleged healthy capabilities. Rev Iberoam Micol 23, 67–74.
24D Romanin , M Serradell , D González Maciel , et al. (2010) Down-regulation of intestinal epithelial innate response by probiotic yeasts isolated from kefir. Int J Food Microbiol 140, 102–108.
25F Patrignani , R Lanciotti , JM Mathara , et al. (2006) Potential of functional strains, isolated from traditional Maasai milk, as starters for the production of fermented milks. Int J Food Microbiol 107, 1–11.
26T Ya , Q Zhang , F Chu , et al. (2008) Immunological evaluation of Lactobacillus casei Zhang: a newly isolated strain from koumiss in Inner Mongolia, China. BMC Immunol 9, 68.
29TJ Won , B Kim , YT Lim , et al. (2011) Oral administration of Lactobacillus strains from Kimchi inhibits atopic dermatitis in NC/Nga mice. J Appl Microbiol 110, 1195–1202.
30FA Ayeni , B Sánchez , BA Adeniyi , et al. (2011) Evaluation of the functional potential of Weissella and Lactobacillus isolates obtained from Nigerian traditional fermented foods and cow's intestine. Int J Food Microbiol 147, 97–104.
31M Zago , ME Fornasari , D Carminati , et al. (2011) Characterization and probiotic potential of Lactobacillus plantarum strains isolated from cheeses. Food Microbiol 28, 1033–1040.
34PA West , JH Hewitt & OM Murphy (1979) Influence of methods of collection and storage on the bacteriology of human milk. J Appl Bacteriol 46, 269–277.
35R Martin , E Jiménez , H Heilig , et al. (2009) Isolation of bifidobacteria from breast milk and assessment of the bifidobacterial population by PCR-denaturing gradient gel electrophoresis and quantitative real-time PCR. Appl Environ Microbiol 75, 965–969.
38S Arboleya , A Binetti , N Salazar , et al. (2012) Establishment and development of intestinal microbiota in preterm neonates. FEMS Microbiol Ecol 79, 763–772.
39G Solis , CG Reyes-Gavilan , N De los Fernandez , et al. (2010) Establishment and development of lactic acid bacteria and bifidobacteria microbiota in breastmilk and the infant gut. Anaerobe 16, 307–310.
41R Martin , S Langa , C Reviriego , et al. (2004) The commensal microflora of human milk: new perspectives for food bacterio therapy and probiotics. Trends Food Sci Technol 15, 121–127.
42FJ Perez-Cano , K Dong & P Yaqoob (2010) In vitro immunomodulatory activity of Lactobacillus fermentum CECT5716 and Lactobacillus salivarius CECT5713: two probiotic strains isolated from human breast milk. Immunobiology 215, 996–1004.
46P Varma , KR Dinesh , KK Menon , et al. (2010) Lactobacillus fermentum isolated from human colonic mucosal biopsy inhibits the growth and adhesion of enteric and foodborne pathogens. J Food Sci 75, M546–M551.
48D Srůtková , A Spanova , M Spano , et al. (2011) Efficiency of PCR-based methods in discriminating Bifidobacterium longum ssp. longum and Bifidobacterium longum ssp. infantis strains of human origin. J Microbiol Methods 87, 10–16.
49PP Lin , YM Hsieh & CC Tsai (2009) Antagonistic activity of Lactobacillus acidophilus RY2 isolated from healthy infancy feces on the growth and adhesion characteristics of enteroaggregative Escherichia coli. Anaerobe 15, 122–126.
50R Martín , E Jiménez , M Olivares , et al. (2006) Lactobacillus salivarius CECT 5713, a potential probiotic strain isolated from infant feces and breast milk of a mother-child pair. Int J Food Microbiol 112, 35–43.
53MC Audisio & MR Benítez-Ahrendts (2011) Lactobacillus johnsonii CRL1647, isolated from Apis mellifera L. bee-gut, exhibited a beneficial effect on honeybee colonies. Benef Microbes 2, 29–34.
58D Haller , H Colbus , MG Ganzle , et al. (2001) Metabolic and functional properties of lactic acid bacteria in the gastro-intestinal ecosystem: a comparative in vitro study between bacteria of intestinal and fermented food origin. Syst Appl Microbiol 24, 218–226.
61R Hartemink & FM Rombouts (1999) Comparison of media for the detection of bifidobacteria, lactobacilli and total anaerobes from faecal samples. J Microbiol Meth 36, 181–192.
63H Beerens (1990) An elective and selective isolation medium for Bifidobacterium spp. Lett Appl Microbiol 11, 155–157.
64RI Dave & NP Shah (1995) Evaluation of media for selective enumeration of Streptococcus thermophilus, Lactobacillus delbrueckii ssp. bulgaricus, Lactobacillus acidophilus, and bifidobacteria. J Dairy Sci 79, 1529–1536.
74S Winker & CR Woese (1991) A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics. Syst Appl Microbiol 14, 305–310.
78G Muyzer & K Smalla (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73, 127–141.
81N Leblond-Bourget , H Philippe , I Mangin , et al. (1996) 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter-and intraspecific Bifidobacterium phylogeny. Int J Syst Bacteriol 46, 102–111.
82T Fehér , V Burland & G Pósfai (2012) In the fast lane: large-scale bacterial genome engineering. J Biotechnol 160, 72–79.
83CG de los Reyes-Gavilán , A Suárez , M Fernández-García , et al. (2011) Adhesion of bile-adapted Bifidobacterium strains to the HT29-MTX cell line is modified after sequential gastrointestinal challenge simulated in vitro using human gastric and duodenal juices. Res Microbiol 162, 514–519.
86Y Sanz (2006) Ecological and functional implications of the acid adaptation ability of Bifidobacterium: a way of selecting improved probiotic strains. Int dairy J 17, 1284–1289.
87I Mainville , Y Arcand & ER Farnworth (2005) A dynamic model that simulates the human upper gastrointestinal tract for the study of probiotics. Int J Food Microbiol 99, 287–296.
90WP Charteris , PM Kelly , L Morelli , et al. (1998) Development and application of an in vitro methodology to determine the transit tolerance of potentially probiotic Lactobacillus and Bifidobacterium species in the upper human gastrointestinal tract. J Appl Microbiol 84, 759–768.
92M Matsumoto , H Ohishi & Y Benno (2004) H+-ATPase activity in Bifidobacterium with special reference to acid tolerance. Int J Food Microbiol 93, 109–113.
93J Matto , HL Alakomi , A Vaari , et al. (2006) Influence of processing conditions on Bifidobacterium animalis subsp., lactis functionality with a special focus on acid tolerance and factors affecting it. Int Dairy J 16, 1029–1037.
96Q Li , Q Chen , H Ruan , et al. (2010) Isolation and characterisation of an oxygen, acid and bile resistant Bifidobacterium animalis subsp. lactis Qq08. J Sci Food Agric 90, 1340–1346.
97M Bosch , M Rodriguez , F Garcia , et al. (2012) Probiotic properties of Lactobacillus plantarum CECT 7315 and CECT 7316 isolated from faeces of healthy children. Lett Appl Microbiol 54, 240–246.
101LM Dicks & M Botes (2010) Probiotic lactic acid bacteria in the gastro-intestinal tract: health benefits, safety and mode of action. Benef Microbes 1, 11–29.
103SH Huang , L He , Y Zhou , et al. (2009) Lactobacillus rhamnosus GG suppresses meningitic E. coli K1 penetration across human intestinal epithelial cells in vitro and protects neonatal rats against experimental hematogenous meningitis. Int J Microbiol 2009, 647862.
105E Izquierdo , M Medina , S Ennahar , et al. (2008) Resistance to simulated gastrointestinal conditions and adhesion to mucus as probiotic criteria for Bifidobacterium longum strains. Curr Microbiol 56, 613–618.
108E Leteurtre , V Gouyer , K Rousseau , et al. (2004) Differential mucin expression in colon carcinoma HT-29 clones with variable resistance to 5-fluorouracil and methotrexate. Biol Cell 96, 145–151.
114K Todoriki , T Mukai , S Sato , et al. (2001) Inhibition of adhesion of food-borne pathogens o Caco-2 cells by Lactobacillus strains. J Appl Microbiol 91, 154–159.
119MT Tien , SE Girardin , B Regnault , et al. (2006) Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells. J Immunol 176, 1228–1237.
124A Von Wright (2005) Regulating the safety of probiotics – the European approach. Curr Pharm Des 11, 17–23.
128ME Sanders , LM Akkermans , D Haller , et al. (2010) Safety assessment of probiotics for human use. Gut Microbes 1, 164–185.
130AT Borchers , C Selmi , FJ Meyers , et al. (2009) Probiotics and immunity. J Gastroenterol 44, 26–46.
133JJ Dugoua , M Machado , X Zhu , et al. (2009) Safety in pregnancy: a systematic review and meta-analysis of RCT of Lactobacillus, Bifidobacterium, and Saccharomyces spp. J Obstet Gynaecol Can 31, 542–552.
134H Vliagoftis , VD Kouranos , GI Betsi , et al. (2008) Probiotics for the treatment of allergic rhinitis and asthma: systematic review of RCT. Ann Allergy Asthma Immunol 101, 570–579.
137M Olivares , MO Díaz-Ropero , N Gómez , et al. (2006) Oral administration of two probiotic strains, Lactobacillus gasseri CECT5714 and Lactobacillus coryniformis CECT5711, enhances the intestinal function of healthy adults. Int J Food Microbiol 107, 104–111.
138RJ Boyle , FJ Bath-Hextall , J Leonardi-Bee , et al. (2009) Probiotics for treating eczema. A systematic review. Clin Exp Allergy 39, 1117–1127.
139J Lee , D Seto & L Bielory (2008) Meta-analysis of clinical trials of probiotics for prevention and treatment of pediatric atopic dermatitis. J Allergy Clin Immunol 121, 116–121.
149LV McFarland & S Dublin (2008) Meta-analysis of probiotics for the treatment of irritable bowel syndrome. World J Gastroenterol 14, 2650–2661.
150A Gawrońska , P Dziechciarz , A Horvath , et al. (2007) A randomized double-blind placebo-controlled trial of Lactobacillus GG for abdominal pain disorders in children. Aliment Pharmacol Ther 25, 177–1784.
158R Hummelen , J Changalucha , NL Butamanya , et al. (2011) Effect of 25 weeks probiotic supplementation on immune function of HIV patients. Gut Microbes 2, 80–85.
161AE Stapleton , M Au-Yeung , TM Hooton , et al. (2011) Randomized, placebo-controlled phase 2 trial of a Lactobacillus crispatus probiotic given intravaginally for prevention of recurrent urinary tract infection. Clin Infect Dis 52, 1212–1217.
163Nt Siempos II, TK aidou & ME Falagas (2010) Impact of the administration of probiotics on the incidence of ventilator-associated pneumonia: a meta-analysis of RCT. Crit Care Med 38, 954–962.
164K Jenks , S Stebbings , J Burton , et al. (2010) Probiotic therapy for the treatment of spondyloarthritis: a randomized controlled trial. J Rheumatol 37, 2118–2125.