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L. Alfieri , T. Nokes-Malach & C. Schunn 2013 Learning through case comparisons: a meta-analytic review. Educational Psychologist 48, 87–113.
A. A. Cheng & T. K. Lu 2012 Synthetic biology: an emerging engineering discipline. Annual Review of Biomedical Engineering 14, 155–178.
M. Chi 2005 Commonsense conceptions of emergent processes: why some misconceptions are robust. Journal of the Learning Sciences 14, 161–199.
M. Chi , R. Roscoe , J. Slotta , M. Roy & C. Chase 2012 Misconceived causal explanations for emergent processes. Cognitive Science 36, 1–61.
P. Egan , J. Cagan , C. Schunn & P. LeDuc 2013 Design of complex biologically based nanoscale systems using multi-agent simulations and structure-behavior-function representations. Journal of Mechanical Design 135, 061005.
P. Egan , J. Cagan , C. Schunn & P. LeDuc 2015a Synergistic human-agent methods for deriving effective search strategies: the case of nanoscale design. Research in Engineering Design 26, 145–169.
P. Egan , J. Moore , C. Schunn , J. Cagan & P. LeDuc 2015b Emergent systems energy laws for predicting myosin ensemble processivity. PLoS Computational Biology 11, e1004177.
P. Egan , R. Sinko , P. LeDuc & S. Keten 2015c The role of mechanics in biological and synthetic bioinspired systems. Nature Communications 6, 1–12.
B. J. German , K. M. Feigh & M. J. Daskilewicz 2013 An experimental study of continuous and discrete visualization paradigms for interactive trade space exploration. Journal of Computing and Information Science in Engineering 13, 021004.
A. K. Goel , S. Vattam , B. Wiltgen & M. Helms 2012 Cognitive, collaborative, conceptual and creative—four characteristics of the next generation of knowledge-based CAD systems: a study in biologically inspired design. Computer-Aided Design 44, 879–900.
Y. Harada , K. Sakurada , T. Aoki , D. D. Thomas & T. Yanagida 1990 Mechanochemical coupling in actomyosin energy transduction studied by in vitro movement assay. Journal of Molecular Biology 216, 49–68.
N. Hirschi & D. Frey 2002 Cognition and complexity: an experiment on the effect of coupling in parameter design. Research in Engineering Design 13, 123–131.
C. E. Hmelo-Silver , S. Marathe & L. Liu 2007 Fish swim, rocks sit, and lungs breathe: expert-novice understanding of complex systems. Journal of the Learning Sciences 16, 307–331.
F. Huber , J. Schnauß , S. Rönicke , P. Rauch , K. Müller , C. Fütterer & J. Käs 2013 Emergent complexity of the cytoskeleton: from single filaments to tissue. Advances in Physics 62, 1–112.
R. Jordan , C. Hmelo-Silver , L. Liu & S. Gray 2013 Fostering reasoning about complex systems: using the aquarium to teach systems thinking. Applied Environmental Education & Communication 12, 55–64.
C. Keating , R. Rogers , R. Unal , D. Dryer , A. Sousa-Poza , R. Safford , W. Peterson & G. Rabadi 2003 System of systems engineering. Engineering Management Journal 15, 36–45.
G. H. Koenderink , Z. Dogic , F. Nakamura , P. M. Bendix , F. C. MacKintosh , J. H. Hartwig , T. P. Stossel & D. A. Weitz 2009 An active biopolymer network controlled by molecular motors. Proceedings of the National Academy of Sciences of the United States of America 106, 15192–15197.
N. Korin , M. Kanapathipillai , B. D. Matthews , M. Crescente , A. Brill , T. Mammoto , K. Ghosh , S. Jurek , S. A. Bencherif & D. Bhatta 2012 Shear-activated nanotherapeutics for drug targeting to obstructed blood vessels. Science 337, 738–742.
D. Kuhn , K. Iordanou , M. Pease & C. Wirkala 2008 Beyond control of variables: What needs to develop to achieve skilled scientific thinking? Cognitive Development 23, 435–451.
X. Li & M. Gunal 2012 Exploring cognitive modelling in engineering usability design. Journal of Engineering Design 23, 77–97.
C. T. Murphy & J. A. Spudich 1998 Dictyostelium myosin 25–50 K loop substitutions specifically affect ADP release rates. Biochemistry 37, 6738–6744.
V. J. Neiman & S. Varghese 2011 Synthetic bio-actuators and their applications in biomedicine. Smart Structures and Systems 7, 185–198.
J. M. Ottino 2004 Engineering complex systems. Nature 427, 399.
D. Roller 1991 An approach to computer-aided parametric design. Computer-Aided Design 23, 385–391.
J. Ruiz , D. Cook & A. Levinson 2009 Computer animations in medical education: a critical literature review. Medical Education 43, 838–846.
S. K. Sim & A. H. Duffy 2003 Towards an ontology of generic engineering design activities. Research in Engineering Design 14, 200–223.
T. W. Simpson , M. Frecker , R. R. Barton & L. Rothrock 2007 Graphical and text-based design interfaces for parameter design of an I-beam, desk lamp, aircraft wing, and job shop manufacturing system. Engineering with Computers 23, 93–107.
J. P. Spatz 2005 Bio-MEMS: building up micromuscles. Nature Materials 4, 115–116.
C. Tan , S. Saurabh , M. P. Bruchez , R. Schwartz & P. Leduc 2013 Molecular crowding shapes gene expression in synthetic cellular nanosystems. Nature Nanotechnology 8, 602–608.
J. J. Van Merriënboer & J. Sweller 2010 Cognitive load theory in health professional education: design principles and strategies. Medical education 44, 85–93.
A. Villalobos , J. Ness , C. Gustafsson , J. Minshull & S. Govindarajan 2006 Gene Designer: a synthetic biology tool for constructing artificial DNA segments. BMC Bioinformatics 7, 1–8.
M. J. Woodruff , P. M. Reed & T. W. Simpson 2013 Many objective visual analytics: rethinking the design of complex engineered systems. Structural and Multidisciplinary Optimization 48, 201–219.
A. A. Yassine 2012 Parametric design adaptation for competitive products. Journal of Intelligent Manufacturing 23, 541–559.
E. Young & H. Alper 2010 Synthetic biology: tools to design, build, and optimize cellular processes. Journal of Biomedicine and Biotechnology 2010, 1–12.
X. Zhang , T. Simpson , M. Frecker & G. Lesieutre 2012 Supporting knowledge exploration and discovery in multi-dimensional data with interactive multiscale visualisation. Journal of Engineering Design 23, 23–47.