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R. J. Adrian 2007 Hairpin vortex organization in wall turbulence. Phys. Fluids 19, 041301-1–041301-16.
D. D. Baldocchi , E. Falge , L. Gu , R. Olson , D. Hollinger , S. Running , P. Anthoni , C. Bernhofer , K. Davis , R. Evans , J. Fuentes , A. Goldstein , G. Katul , B. Law , X. Lee , Y. Malhi , T. Meyers , W. Munger , W. Oechal , U. K. T. Paw , K. Pilegaard , H. P. Schmid , R. Valentini , S. Verma , T. Vesala , K. Wilson & S. Wofsy 2001 FLUXNET: a new tool to study the temporal and spatial variability of ecosystem-scale carbon dioxide, water vapour and energy flux densities. Bull. Am. Meteorol. Soc. 82, 2415–2434.
D. D. Baldocchi & B. A. Hutchinson 1987 Turbulence in an almond orchard: vertical variation in turbulence statistics. Boundary-Layer Meteorol. 40, 177–146.
K. W. Brown & W. Covey 1966 The energy-budget evaluation of the micro-meteorological transfer process within a corn field. Agric. Meteorol. 3, 73–96.
Y. Brunet , J. J. Finnigan & M. R. Raupach 1994 A wind tunnel study of air flow in waving wheat: single-point velocity statistics. Boundary-Layer Meteorol. 70, 95–132.
P. Cellier & Y. Brunet 1992 Flux-gradient relationships above tall plant canopies. Agric. Forest Meteorol. 58, 93–117.
S. Collineau & Y. Brunet 1993 bDetection of turbulent coherent motions in a forest canopy. Part 2. Timescales and conditional averages. Boundary-Layer Meteorol. 66, 49–73.
J. W. Deardorff 1980 Stratocumulus-capped mixed layers derived from a three-dimensional model. Boundary-Layer Meteorol. 18, 495–527.
M. J. Dwyer , E. G. Patton & R. H. Shaw 1997 Turbulent kinetic energy budgets from a large-eddy simulation of airflow above and within a forest. Boundary-Layer Meteorol. 84, 23–43.
J. J. Finnigan 1979 Turbulence in waving wheat. Part 2. Structure of momentum transfer. Boundary-Layer Meteorol. 16, 213–236.
J. J. Finnigan 1985 Turbulent transport in flexible plant canopies. In The Forest–Atmosphere Interaction (ed. B. A. Hutchison & B. B. Hicks ), pp. 443–480. Reidel.
J. J. Finnigan 2000 Turbulence in plant canopies. Annu. Rev. Fluid Mech. 32, 519–571.
J. J. Finnigan & R. H. Shaw 2000 A wind tunnel study of airflow in waving wheat: an empirical orthogonal function analysis of the large-eddy motion. Boundary-Layer Meteorol. 96, 211–255.
L. Fitzmaurice , R. H. Shaw , U. K. T. Paw & E. G. Patton 2004 Three-dimensional scalar microfront systems in a large-eddy simulation of vegetation canopy flow. Boundary-Layer Meteorol. 112, 107–127.
J. S. Frederiksen & G. Branstator 2005 seasonal variability of teleconnection patterns. J. Atmos. Sci. 62, 1346–1365.
W. Gao , R. H. Shaw & U. K. T. Paw 1989 Observation of organized structure in turbulent flow within and above a forest canopy. Boundary-Layer Meteorol. 47, 349–377.
B. A. Gardiner 1994 Wind and wind forces in a plantation spruce forest. Boundary-Layer Meteorol. 67, 161–186.
J. R. Garratt 1980 Surface influence on vertical profiles in the atmospheric near-surface layer. Quart. J. R. Meteorol. Soc. 106, 803–819.
J. R. Garratt 1983 Surface influence upon vertical profiles in the nocturnal boundary layer. Boundary-Layer Meteorol. 26, 69–80.
T. Gerz , J. Howell & L. Mahrt 1994 Vortex structures and microfronts. Phys. Fluids 6, 1242–1251.
M. Ghisalberti & H. Nepf 2002 Mixing layers and coherent structures in vegetated aquatic flow. J. Geophys. Res. 107, 1–11.
I. N. Harman & J. F. Finnigan 2007 A simple unified theory for flow in the canopy and roughness sublayer. Boundary-Layer Meteorol. 123, 339–363.
I. N. Harman & J. F. Finnigan 2008 Scalar concentration profiles in the canopy and roughness sublayer. Boundary-Layer Meteorol. 129, 323–351.
J. C. R. Hunt & J. F. Morrison 2000 Eddy structure in turbulent boundary layers. Eur. J. Mech. B. 19, 673–694.
G. Katul & B. Vidakovic 1998 Identification of low-dimensional energy containing/flux transporting eddy motion in the atmospheric surface layer using wavelet thresholding methods. J. Atmos. Sci. 55, 377–389.
G. G. Katul , D. Poggi , D. Cava & J. J. Finnigan 2006 The relative importance of ejections and sweeps to momentum transfer in the atmospheric boundary layer. Boundary-Layer Meteorol. 120, 367–375.
J. T. C. Liu 1988 Contributions to the understanding of large-scale coherent structures in developing free turbulent shear flows. Adv. Appl. Mech. 26, 183–309.
B. J. McKeon & K. R. Sreenivasen 2007 Introduction: scaling and structure in high Reynolds number wall-bounded flows. Phil. Trans. R. Soc. A 365, 635–646.
E. G. Patton , K. J. Davis , M. Barth C. & P. P. Sullivan 2001 Decaying scalars emitted by a forest canopy – a numerical study. Boundary-Layer Meteorol. 100, 91–129.
E. G. Patton , P. P. Sullivan & K. J. Davis 2003 The influence of a forest canopy on top-down and bottom-up diffusion in the planetary boundary layer. Quart. J. R. Meteorol. Soc. 129, 1415–1434.
E. G. Patton , P. P. Sullivan & C.-H. Moeng 2005 The influence of idealized heterogeneity on wet and dry planetary boundary layers coupled to the land surface. J. Atmos. Sci. 62, 2078–2097.
M. R. Raupach 1979 Anomalies in flux-gradient relationships over forest. Boundary-Layer Meteorol. 16, 467–486.
M. R. Raupach 1992 Drag and drag partition on rough surfaces. Boundary-Layer Meteorol. 60, 375–395.
M. R. Raupach , P. A. Coppin & B. J. Legg 1986 Experiments on scalar dispersion within a model plant canopy. Part 1. The turbulence structure. Boundary-Layer Meteorol. 35, 21–52.
M. R. Raupach , J. J. Finnigan & Y. Brunet 1996 Coherent eddies and turbulence in vegetation canopies: the mixing layer analogy. Boundary-Layer Meteorol. 78, 351–382.
M. R. Raupach & R. H. Shaw 1982 Averaging procedures for flow within vegetation canopies. Boundary-Layer Meteorol. 22, 79–90.
R. T. Reynolds , P. Hayden , I. P. Castro & A. G. Robins 2007 Spanwise variations in nominally two-dimensional rough-wall boundary layers. Exp. Fluids 42, 311–320.
S. K. Robinson 1991 Coherent motions in the turbulent boundary layer. Annu. Rev. Fluid Mech. 23, 601–639.
M. M. Rogers & R. D. Moser 1994 Direct simulation of a self-similar turbulent mixing layer. Phys. Fluids 6, 903–923.
R. H. Shaw , Y. Brunet , J. J. Finnigan & M. R. Raupach 1995 A wind tunnel study of air flow in waving wheat: two-point velocity statistics. Boundary-Layer Meteorol. 76, 349–376.
R. H. Shaw & E. G. Patton 2003 Canopy element influences on resolved- and subgrid-scale energy within a large-eddy simulation. Agric. Forest Meteorol. 115, 5–17.
R. Shaw H, Paw U. K. T., Zhang, X. J., Gao, W., Den hartog, G. & H. H. Neumann 1990 Retrieval of turbulent pressure fluctuations at the ground surface beneath a forest. Boundary-Layer Meteorol. 50, 319–338.
R. H. Shaw & U. Schumann 1992 Large-eddy simulation of turbulent flow above and within a forest. Boundary-Layer Meteorol. 61, 47–64.
R. H. Shaw , J. Tavanger & D. P. Ward 1983 Structure of the Reynolds stress in a canopy layer. J. Climate Appl. Meteorol. 22, 1922–1931.
A. S. Thom Stewart, J. B., Oliver, H. R. & J. H. C. Gash 1975 Comparison of aerodynamic and energy budget analysis of fluxes over a pine forest. Quart. J. R. Meteorol. Soc. 101, 93–105.
W. Watanabe 2004 Large-eddy simulation of coherent turbulence structures associated with scalar ramps over plant canopies. Boundary-Layer Meteorol. 112, 307–341.
S. E. Widnall 1975 The structure and dynamics of vortex filaments. Annu. Rev. Fluid Mech. 7, 141–165.
S. Zhang & D. Choudhury 2006 Eigen helicity density: a new vortex identification scheme and its application in accelerated inhomogeneous flows. Phys. Fluids 18 058104-1–058104-4.