Hostname: page-component-76fb5796d-vvkck Total loading time: 0 Render date: 2024-04-26T18:47:09.852Z Has data issue: false hasContentIssue false
  • English
  • Français

A molecular re-evaluation of Parmelia encryptata with notes on its distribution

Published online by Cambridge University Press:  30 July 2021

Emilia Anna Ossowska Open the ORCID record for Emilia Anna Ossowska [Opens in a new window] ,
Beata Guzow-Krzemińska Open the ORCID record for Beata Guzow-Krzemińska [Opens in a new window] ,
Rafał Szymczyk Open the ORCID record for Rafał Szymczyk [Opens in a new window]  and
Martin Kukwa Open the ORCID record for Martin Kukwa [Opens in a new window]
Emilia Anna Ossowska*
Affiliation:
Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, Poland
Beata Guzow-Krzemińska
Affiliation:
Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, Poland
Rafał Szymczyk
Affiliation:
Enviromental Survey Laboratory EKOPROJEKT, Nowica 24, 14-405 Wilczęta, Poland
Martin Kukwa
Affiliation:
Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80-308 Gdańsk, Poland
*
Author for correspondence: Emilia Anna Ossowska. E-mail: emilia.ossowska@ug.edu.pl
Get access Rights & Permissions [Opens in a new window]

Abstract

An abstract is not available for this content so a preview has been provided. Please use the Get access link above for information on how to access this content.
Image of the first page of this content. For PDF version, please use the ‘Save PDF’ preceeding this image.'
Type
Short Communication
Information
The Lichenologist , Volume 53 , Issue 4 , July 2021 , pp. 341 - 345
Check for updates
Copyright
Copyright © The Author(s), 2021. Published by Cambridge University Press on behalf of the British Lichen Society

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Altschul, SF, Gish, W, Miller, W, Myers, EW and Lipman, DJ (1990) Basic Local Alignment Search Tool. Journal of Molecular Biology 215, 403–410.CrossRefGoogle ScholarPubMed
Barreno, E and Herrera-Campos, MA (2009) Parmelia barrenoae Divakar, M.C. Molina & A. Crespo un liquen nuevo para la flora Asturiana. Boletín de Ciencias de la Naturaleza RIDEA 50, 333–341.Google Scholar
Cieśliński, S, Czyżewska, K, Faliński, JB, Klama, H, Mułenko, W and Żarnowiec, J (1996) Relicts of the primeval (virgin) forest. Relict phenomena. In Faliński, JB and Mułenko, W (eds), Cryptogamous Plants in the Forest Communities of Białowieża National Park (Project CRYPTO 3). Phytocoenosis 8 (N.S.), Archivum Geobotanicum 6. Warsaw: Polish Botanical Society, pp. 197–216.Google Scholar
Corsie, EI, Harrold, P and Yahr, R (2019) No combination of morphological, ecological or chemical characters can reliably diagnose species in the Parmelia saxatilis aggregate in Scotland. Lichenologist 51, 107–121.CrossRefGoogle Scholar
Crespo, A, Rico, VJ, Garrido, E, Lumbsch, HT and Divakar, PK (2020) A revision of species of the Parmelia saxatilis complex in the Iberian Peninsula with the description of P. rojoi, a new potentially relict species. Lichenologist 52, 365–376.CrossRefGoogle Scholar
Divakar, PK, Molina, MC, Lumbsch, HT and Crespo, A (2005) Parmelia barrenoae, a new lichen species related to Parmelia sulcata (Parmeliaceae) based on molecular and morphological data. Lichenologist 37, 37–46.CrossRefGoogle Scholar
Divakar, PK, Leavitt, SD, Molina, MC, Del-Prado, R, Lumbsch, HT and Crespo, A (2016) A DNA barcoding approach for identification of hidden diversity in Parmeliaceae (Ascomycota): Parmelia sensu stricto as a case study. Botanical Journal of the Linnean Society 180, 21–29.CrossRefGoogle Scholar
Ertz, D, Guzow-Krzemińska, B, Thor, G, Łubek, A and Kukwa, M (2018 a) Photobiont switching causes changes in the reproduction strategy and phenotypic dimorphism in the Arthoniomycetes. Scientific Reports 8, 4952.CrossRefGoogle ScholarPubMed
Ertz, D, Sanderson, N, Łubek, A and Kukwa, M (2018 b) Two new species of Arthoniaceae from old-growth European forests, Arthonia thoriana and Inoderma sorediatum, and a new genus for Schismatomma niveum. Lichenologist 50, 161–172.CrossRefGoogle Scholar
Guzow-Krzemińska, B, Czarnota, P, Łubek, A and Kukwa, M (2016) Micarea soralifera sp. nov., a new sorediate species in the Micarea prasina group. Lichenologist 48, 161–169.CrossRefGoogle Scholar
Guzow-Krzemińska, B, Łubek, A, Malíček, J, Tønsberg, T, Oset, M and Kukwa, M (2017) Lecanora stanislai, a new, sterile, usnic acid containing lichen species from Eurasia and North America. Phytotaxa 329, 201–211.CrossRefGoogle Scholar
Guzow-Krzemińska, B, Łubek, A, Kubiak, D, Ossowska, E and Kukwa, M (2018) Phylogenetic approaches reveal a new sterile lichen in the genus Loxospora (Sarrameanales, Ascomycota) in Poland. Phytotaxa 348, 211–220.CrossRefGoogle Scholar
Hawksworth, DL, Blanco, O, Divakar, PK, Ahti, T and Crespo, A (2008) A first checklist of parmelioid and similar lichens in Europe and some adjacent territories, adopting revised generic circumscriptions and with indications of species distributions. Lichenologist 40, 1–21.CrossRefGoogle Scholar
Hawksworth, DL, Divakar, PK, Crespo, A and Ahti, T (2011) The checklist of parmelioid and similar lichens in Europe and some adjacent territories: additions and corrections. Lichenologist 43, 639–645.CrossRefGoogle Scholar
Hodkinson, BP, Lendemer, JC and Esslinger, TL (2010) Parmelia barrenoae, a macrolichen new to North America and Africa. North American Fungi 5, 1–5.Google Scholar
Hofstetter, V, Buyck, B, Eyssartier, G, Schnee, S and Gindro, K (2019) The unbearable lightness of sequenced-based identification. Fungal Diversity 96, 243–284.CrossRefGoogle Scholar
Huelsenbeck, JP and Ronquist, F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754–755.CrossRefGoogle ScholarPubMed
Jaroszewicz, B, Cholewińska, O, Gutowski, JM, Samojlik, T, Zimny, M and Latałowa, M (2019) Białowieża Forest – a relic of the high naturalness of European forests. Forests 10, 849.CrossRefGoogle Scholar
Katoh, K, Misawa, K, Kuma, K and Miyata, T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30, 3059–3066.CrossRefGoogle ScholarPubMed
Lanfear, R, Calcott, B, Ho, SY and Guindon, S (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29, 1695–1701.CrossRefGoogle ScholarPubMed
Lanfear, R, Frandsen, PB, Wright, AM, Senfeld, T and Calcott, B (2016) PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34, 772–773.Google Scholar
Łubek, A, Kukwa, M, Jaroszewicz, B and Czortek, P (2018) Changes in the epiphytic lichen biota of Białowieża Primeval Forest are not explained by climate warming. Science of the Total Environment 643, 468–478.CrossRefGoogle Scholar
Łubek, A, Kukwa, M, Jaroszewicz, B and Czortek, P (2020) Identifying mechanisms shaping lichen functional diversity in a primeval forest. Forest Ecology and Management 475, 118434.CrossRefGoogle Scholar
Lücking, R, Aime, MC, Robbertse, B, Miller, AN, Ariyawansa, HA, Aoki, T, Cardinali, G, Crous, PW, Druzhinina, IS, Geiser, DM, et al. (2020 a) Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal barcoding? IMA Fungus 11, 14.CrossRefGoogle Scholar
Lücking, R, Nadel, MRA, Araujo, E and Gerlach, A (2020 b) Two decades of DNA barcoding in the genus Usnea (Parmeliaceae): how useful and reliable is the ITS? Plant and Fungal Systematics 65, 303–357.CrossRefGoogle Scholar
Mark, K, Laanisto, L, Bueno, GC, Niinemets, U, Keller, C and Scheidegger, C (2020) Contrasting co-occurrence patterns of photobiont and cystobasidiomycete yeast associated with common epiphytic lichen species. New Phytologist 227, 1362–1375.CrossRefGoogle ScholarPubMed
Miller, MA, Pfeiffer, W and Schwartz, T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, Louisiana, pp. 1–8.CrossRefGoogle Scholar
Molina, MC, Crespo, A, Blanco, O, Lumbsch, HT and Hawksworth, DL (2004) Phylogenetic relationships and species concepts in Parmelia s. str. (Parmeliaceae) inferred from nuclear ITS rDNA and β-tubulin sequences. Lichenologist 36, 37–54.CrossRefGoogle Scholar
Molina, MC, Divakar, PK, Millanes, AM, Sánchez, E, Del-Prado, R, Hawksworth, DL and Crespo, A (2011) Parmelia sulcata (Ascomycota: Parmeliaceae), a sympatric monophyletic species complex. Lichenologist 43, 585–601.CrossRefGoogle Scholar
Molina, MC, Divakar, PK, Goward, T, Millanes, AM, Lumbsch, HT and Crespo, A (2017) Neogene diversification in the temperate lichen-forming fungal genus Parmelia (Parmeliaceae, Ascomycota). Systematics and Biodiversity 15, 166–181.CrossRefGoogle Scholar
Moncada, B, Sipman, HJM and Lücking, R (2020) Testing DNA barcoding in Usnea (Parmeliaceae) in Colombia using the internal transcribed spacer (ITS). Plant and Fungal Systematics 65, 358–385.CrossRefGoogle Scholar
Motiejūnaitė, J, Czyżewska, K and Cieśliński, S (2004) Lichens – indicators of old-growth forests in biocentres of Lithuania and north-east Poland. Botanica Lithuanica 10, 59–74.Google Scholar
Nilsson, RH, Ryberg, M, Kristiansson, E, Abarenkov, K, Larsson, K-H and Kõljalg, U (2006) Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS ONE 1, e59.CrossRefGoogle ScholarPubMed
Okonechnikov, K, Golosova, O, Fursov, M and UGENE team (2012) Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 28, 1166–1167.CrossRefGoogle ScholarPubMed
Ossowska, E and Kukwa, M (2016) Parmelia barrenoae and P. pinnatifida, two lichen species new to Poland. Herzogia 29, 198–203.CrossRefGoogle Scholar
Ossowska, E, Guzow-Krzemińska, B, Dudek, M, Oset, M and Kukwa, M (2018) Evaluation of diagnostic chemical and morphological characters in five Parmelia species (Parmeliaceae, lichenized Ascomycota) with special emphasis on the thallus pruinosity. Phytotaxa 383, 165–180.CrossRefGoogle Scholar
Ossowska, E, Guzow-Krzemińska, B, Kolanowska, M, Szczepańska, K and Kukwa, M (2019) Morphology and secondary chemistry in species recognition of Parmelia omphalodes group – evidence from molecular data with notes on the ecological niche modelling and genetic variability of photobionts. MycoKeys 61, 39–74.CrossRefGoogle ScholarPubMed
Rambaut, A (2012) FigTree v.1.4.2. [WWW resource] URL http://tree.bio.ed.ac.uk/software/figtree/.Google Scholar
Ronquist, F and Huelsenbeck, JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574.CrossRefGoogle ScholarPubMed
Schoch, CL, Seifert, KA, Huhndorf, S, Robert, V, Spouge, JL, Levesque, CA, Chen, W and Fungal Barcoding Consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109, 6241–6246.CrossRefGoogle ScholarPubMed
Singh, G, Kukwa, M, Dal Grande, F, Łubek, A, Otte, J and Schmitt, I (2019) A glimpse into genetic diversity and symbiont interaction patterns in lichen communities from areas with different disturbance histories in Białowieża Forest, Poland. Microorganisms 7, 335.CrossRefGoogle ScholarPubMed
Stamatakis, A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313.CrossRefGoogle ScholarPubMed
Sylvester, SP, Heitkamp, F, Sylvester, MDPV, Jungkunst, HF, Sipman, HJM, Toivonen, JM, Gonzales Inca, CA, Ospina, JC and Kessler, M (2017) Relict high-Andean ecosystems challenge our concepts of naturalness and human impact. Scientific Reports 7, 3334.CrossRefGoogle ScholarPubMed
Thell, A, Thor, G and Ahti, T (2011) Parmelia. In Thell, A and Moberg, R (eds), Nordic Lichen Flora, Volume 4: Parmeliaceae. Uppsala: Nordic Lichen Society, pp. 83–90.Google Scholar
Tsurykau, A, Bely, P, Golubkov, V, Persson, P-E and Thell, A (2019) The lichen genus Parmelia (Parmeliaceae, Ascomycota) in Belarus. Herzogia 32, 375–384.CrossRefGoogle Scholar