Skip to main content Accessibility help
×
×
Home

Diversity of the Trypethelium eluteriae group in Thailand (Ascomycota, Trypetheliales)

  • Theerapat LUANGSUPHABOOL (a1), Jittra PIAPUKIEW (a2), Sittiporn PARNMEN (a3), Matthew P. NELSEN (a4), H. Thorsten LUMBSCH (a5) and Ek SANGVICHIEN (a6)...

Abstract

The diversity of the Trypethelium eluteriae group in Thailand was studied using molecular (ITS and mtSSU rDNA sequences), morphological, and chemical data. Three species were recognized, T. eluteriae, T. platystomum, and T. subeluteriae, with the latter two being new records for Thailand. The separation of the three species, which have sometimes been regarded as synonymous, is supported by molecular and phenotypic characters. The chemical profiles of the three species are distinct, while ascospore size, often used to distinguish species in the group, shows some overlap.

Copyright

References

Hide All
Aptroot, A. (2009) Trypetheliaceae. Flora of Australia 57: 535552.
Aptroot, A., Saipunkaew, W., Sipman, H. J. M., Sparrius, L. B. & Wolseley, P. A. (2007) New lichens from Thailand, mainly microlichens from Chiang Mai. Fungal Diversity 24: 75134.
Aptroot, A., Lücking, R., Sipman, H. J. M., Umaña, L. & Chaves, J. L. (2008) Pyrenocarpous lichens with bitunicate asci. A first assessment of the lichen biodiversity inventory in Costa Rica. Bibliotheca Lichenologica 97: 1162.
Cai, L., Hyde, K. D., Taylor, P. W. J., Weir, B. S., Waller, J. M., Abang, M. M., Zhang, J. Z., Yang, Y. L., Phoulivong, S., Liu, Z. Y. et al. (2009) A polyphasic approach for studying Colletotrichum . Fungal Diversity 39: 183204.
Cubero, O. F. & Crespo, A. (2002) Isolation of nucleic acids from lichens. In Protocols in Lichenology. Culturing, Biochemistry, Ecophysiology and Use in Biomonitoring (I. Kranner, R. P. Beckett & A. K. Varma, eds): 381392. Berlin: Springer.
Culberson, C. F. (1972) Improved conditions and new data for the identification of lichen products by a standardized thin-layer chromatographic method. Journal of Chromatography 72: 113125.
Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772.
Del Prado, R., Schmitt, I., Kautz, S., Palice, Z., Lücking, R. & Lumbsch, H. T. (2006) Molecular data place Trypetheliaceae in Dothideomycetes. Mycological Research 110: 511520.
Favaro, L. C. de Lima, de Melo, F. L., Aguilar-Vildoso, C. I. & Araujo, W. L. (2011) Polyphasic analysis of intraspecific diversity in Epicoccum nigrum warrants reclassification into separate species. Plos One 6: e14828.
Gardes, M. & Bruns, T. D. (1993) ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113118.
Groenewald, M., Daniel, H. M., Robert, V., Poot, G. A. & Smith, M. T. (2008) Polyphasic re-examination of Debaryomyces hansenii strains and reinstatement of D. hansenii, D. fabryi and D. subglobosus . Persoonia 21: 1727.
Harris, R. C. (1989) A sketch of the family Pyrenulaceae (Melanommatales) in eastern North America. Memoirs of the New York Botanical Garden 49: 74107.
Harris, R. C. (1995) More Florida Lichens. Including the 10¢ Tour of the Pyrenolichens. New York: Published by the author.
Hawksworth, D. L. (1976) Lichen chemotaxonomy. In Lichenology: Progress and Problems (D. H. Brown, D. L. Hawksworth & R. H. Bailey, eds): 139184. London: Academic Press.
Hong, S. B., Go, S. J., Shin, H. D., Frisvad, J. C. & Samson, R. A. (2005) Polyphasic taxonomy of Aspergillus fumigatus and related species. Mycologia 97: 13161329.
Hong, S. G., Maccaroni, M., Figuli, P. J., Pryor, B. M. & Belisario, A. (2006) Polyphasic classification of Alternaria isolated from hazelnut and walnut fruit in Europe. Mycological Research 110: 12901300.
Kirk, P. M., Cannon, P. F., Minter, D. W. & Stalpers, J. A. (2008) Dictionary of the Fungi. 10th edn. Wallingford: CAB International.
Knutsen, A. K., Robert, V., Poot, G. A., Epping, W., Figge, M., Holst-Jensen, A., Skaar, I. & Smith, M. T. (2007) Polyphasic re-examination of Yarrowia lipolytica strains and the description of three novel Candida species: Candida oslonensis sp. nov., Candida alimentaria sp. nov. and Candida hollandica sp. nov. International Journal of Systematic and Evolutionary Microbiology 57: 24262435.
Lumbsch, H. T. (1998 a) The taxonomic use of metabolic data in lichen-forming fungi. In Chemical Fungal Taxonomy (J. C. Frisvad, P. D. Bridge & D. K. Arora, eds): 345387. New York: M. Dekker.
Lumbsch, H. T. (1998 b) The use of metabolic data in lichenology at the species and subspecific levels. Lichenologist 30: 357367.
Lumbsch, H. T. (2002) Analysis of phenolic products in lichens for identification and taxonomy. In Protocols in Lichenology. Culturing, Biochemistry, Ecophysiology and Use in Biomonitoring (I. Kranner, R. P. Beckett & A. K. Varma, eds): 281295. Berlin: Springer.
Makhija, U. & Patwardhan, P. G. (1992) Nomenclatural notes on some species of Trypethelium . International Journal of Mycology and Lichenology 5: 237251.
Makhija, U. & Patwardhan, P. G. (1993) A contribution to our knowledge of the lichen genus Trypethelium (family Trypetheliaceae). Journal of the Hattori Botanical Laboratory 73: 183219.
Montes, M. J., Belloch, C., Galiana, M., Garcia, M. D., Andres, C., Ferrer, S., Torres-Rodriguez, J. M. & Guinea, J. (1999) Polyphasic taxonomy of a novel yeast isolated from Antarctic environment; description of Cryptococcus victoriae sp. nov. Systematic and Applied Microbiology 22: 97105.
Nelsen, M. P., Lücking, R., Grube, M., Mbatchou, J. S., Muggia, L., Plata, E. R. & Lumbsch, H. T. (2009) Unravelling the phylogenetic relationships of lichenised fungi in Dothideomyceta. Studies in Mycology 64: 135144.
Nelsen, M. P., Lücking, R., Mbatchou, J. S., Andrew, C. J., Spielmann, A. A. & Lumbsch, H. T. (2011) New insights into relationships of lichen-forming Dothideomycetes. Fungal Diversity 51: 155162.
Nelsen, M. P., Lücking, R., Aptroot, A., Andrew, C. J., Cáceres, M. E. S., Rivas Plata, E., Gueidan, C., da Silva Canêz, L., Knight, A., Ludwig, L. R. et al. (2014) Elucidating phylogenetic relationships and genus-level classification within the fungal family Trypetheliaceae (Ascomycota: Dothideomycetes). Taxon 63: 974992.
Ronquist, F. & Huelsenbeck, J. P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 15721574.
Samson, R. A., Houbraken, J., Varga, J. & Frisvad, J. C. (2009) Polyphasic taxonomy of the heat resistant ascomycete genus Byssochlamys and its Paecilomyces anamorphs. Persoonia 22: 1427.
Sangvichien, E., Hawksworth, D. L. & Whalley, A. J. S. (2011) Ascospore discharge, germination and culture of fungal partners of tropical lichens, including the use of a novel culture technique. IMA Fungus 2: 143153.
Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 26882690.
Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57: 758771.
Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution 30: 27252729.
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 46734680.
White, T. J., Bruns, T. D., Lee, S. B. & Taylor, J. W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications (M. A. Innis, D. H. Gelfand, J. J. Sninsky & T. J. White, eds): 315322. San Diego: Academic Press.
Wolseley, P. A., Aguirre-Hudson, B. & McCarthy, P. M. (2002) Catalogue of the lichens of Thailand. Bulletin of the British Museum (Natural History), Botany 32: 1359.
Zhou, S. & Stanosz, G. R. (2001) Primers for amplification of mt SSU rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi. Mycological Research 105: 10331044.
Zoller, S., Scheidegger, C. & Sperisen, C. (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31: 511516.
Recommend this journal

Email your librarian or administrator to recommend adding this journal to your organisation's collection.

The Lichenologist
  • ISSN: 0024-2829
  • EISSN: 1096-1135
  • URL: /core/journals/lichenologist
Please enter your name
Please enter a valid email address
Who would you like to send this to? *
×

Keywords

Metrics

Full text views

Total number of HTML views: 0
Total number of PDF views: 0 *
Loading metrics...

Abstract views

Total abstract views: 0 *
Loading metrics...

* Views captured on Cambridge Core between <date>. This data will be updated every 24 hours.

Usage data cannot currently be displayed