Aberhan, M., Kiessling, W., and Fursich, F. T.. 2006. Testing the role of biological interactions in the evolution of mid-Mesozoic marine benthic ecosystems. Paleobiology 32:259–277.
Agassiz, L. 1859. An essay on classification. Longman, Brown, Green, Longmans, Roberts, London.
Allmon, W. D., and Martin, R. E.. 2014. Seafood through time revisited: the Phanerozoic increase in marine trophic resources and its macroevolutionary consequences. Paleobiology 40:256–287.
Alroy, J. 2010. The shifting balance of diversity among major marine animal groups. Science 329:1191–1194.
Alroy, J. 2014. Accurate and precise estimates of origination and extinction rates. Paleobiology 40:374–397.
Balseiro, D., Sterren, A. F., and Cisterna, G.. 2014. Coexistence of brachiopod and bivalves in the Late Paleozoic of Western Argentina. Palaeogeography, Palaeoclimatology, Palaeoecology 414:133–145.
Bambach, R. K. 1993. Seafood through time—changes in biomass, energetics, and productivity in the marine ecosystem. Paleobiology 19:372–397.
Bambach, R. K., and Bennington, J. B.. 1996. Do communities evolve? A major question in evolutionary paleoecology. Pp. 123–160 in Jablonski, D., Erwin, D. H., and Lipps, J. H., eds. Evolutionary paleobiology: in honor of James W. Valentine. University of Chicago Press, Chicago, Ill.
Bennington, J. B. 1995. Community persistence and the pattern of community variability over time: a test using fossil assemblages from four marine transgressions in the Breathitt Formation (Middle Pennsylvanian) of Eastern Kentucky. Ph.D. dissertation. Virginia Tech, Blacksburg, Va.
Bennington, J. B., and Bambach, R. K.. 1996. Statistical testing for paleocommunity recurrence: are similar fossil assemblages ever the same? Palaeogeography Palaeoclimatology Palaeoecology 127:107–133.
Bonelli, J. R., Brett, C. E., Miller, A. I., and Bennington, J. B.. 2006. Testing for faunal stability across a regional biotic transition: quantifying stasis and variation among recurring coral-rich biofacies in the Middle Devonian Appalachian Basin. Paleobiology 32:20–37.
Brand, U. 1983. Mineralogy and chemistry of the lower Pennsylvanian Kendrick Fauna, eastern Kentucky, USA. 3. Diagenetic and paleoenvironmental analysis. Chemical Geology 40:167–181.
Bush, A. M., and Bambach, R. K.. 2004. Did alpha diversity increase during the Phanerozoic? Lifting the veils of taphonomic, latitudinal, and environmental biases. Journal of Geology 112:625–642.
Bush, A. M., and Bambach, R. K.. 2011. Paleoecologic megatrends in marine metazoa. Annual Review of Earth and Planetary Sciences 39:241–269.
Bush, A. M., and Bambach, R. K.. 2015. Sustained Mesozoic–Cenozoic diversification of marine Metazoa: a consistent signal from the fossil record. Geology 43:979–982.
Bush, A. M., and Brame, R. I.. 2010. Multiple paleoecological controls on the composition of marine fossil assemblages from the Frasnian (Late Devonian) of Virginia, with a comparison of ordination methods. Paleobiology 36:573–591.
Bush, A. M., and Daley, G. M.. 2008. Comparative paleoecology of fossils and fossil assemblages. In Kelley, P. H. and Bambach, R. K., eds. From evolution to geobiology: research questions driving paleontology at the start of a new century. Paleontological Society Papers 14:289–317. Paleontological Society, Boulder, Colo.
Bush, A. M., Pruss, S. B., and Payne, J. L.. 2013. Ecosystem paleobiology and geobiology: connecting the biological and earth systems. Paleontological Society Papers 19, xi–xiv.
Bush, A. M., Hunt, G., and Bambach, R. K.. 2016. Sex and the shifting biodiversity dynamics of marine animals in deep time. Proceedings of the National Academy of Sciences USA 113:14073–14078.
Butts, S. H. 2014. Silicification. In Laflamme, M., Schiffbauer, J. D., and Darroch, S. A. F., eds. Reading and writing of the fossil record: preservational pathways to exceptional fossilization. Paleontological Society Papers 20:15–33. Paleontological Society, Boulder, Colo.
Cherns, L., Wheeley, J. R., and Wright, V. P.. 2008. Taphonomic windows and molluscan preservation. Palaeogeography Palaeoclimatology Palaeoecology 270:220–229.
Cherns, L., and Wright, V. P.. 2000. Missing molluscs as evidence of large-scale early skeletal aragonite dissolution in a Silurian sea. Geology 28:791–794.
Cherns, L., and Wright, V. P.. 2009. Quantifying the impacts of early diagenetic aragonite dissolution on the fossil record. Palaios 24:756–771.
Chesnut, D. R. Jr. 1989. Pennsylvanian rocks of the eastern Kentucky coal field. Pp. 57–64 in Cecil, C. B. and Eble, C., eds. Carboniferous geology of the eastern United States, Vol. 143. American Geophysical Union, Washington, D.C.
Clapham, M. E. 2015. Ecological consequences of the Guadalupian extinction and its role in the brachiopod-mollusk transition. Paleobiology 41:266–279.
Clapham, M. E., Bottjer, D. J., Powers, C. M., Bonuso, N., Fraiser, M. L., Marenco, P. J., Dornbos, S. Q., and Pruss, S. B.. 2006. Assessing the ecological dominance of Phanerozoic marine invertebrates. Palaios 21:431–441.
Clarke, K. R. 1993. Non-parametric multivariate analyses of changes in community structure. Austral Ecology 18:117–143.
Finnegan, S. 2013. Quantifying seafood through time: counting calories in the fossil record. Paleontological Society Papers 19:21–49.
Finnegan, S., and Droser, M. L.. 2008. Body size, energetics, and the Ordovician restructuring of marine ecosystems. Paleobiology 34:342–359.
Finnegan, S., McClain, C. M., Kosnik, M. A., and Payne, J. L.. 2011. Escargots through time: an energetic comparison of marine gastropod assemblages before and after the Mesozoic Marine Revolution. Paleobiology 37:252–269.
Foote, M. 2010. The geological history of biodiversity. Pp. 479–510 in Bell, M. A., ed. Evolution since Darwin: the first 150 years. Sinauer, Sunderland, Mass.
Foote, M., Crampton, J.S., Beu, A.G., and Nelson, C.S.. 2015. Aragonite bias, and lack of bias, in the fossil record: lithological, environmental, and ecological controls. Paleobiology 41:245–265.
Foote, M., and Sepkoski, J. J.. 1999. Absolute measures of the completeness of the fossil record. Nature 398:415–417.
Frechette, M., and Lefaivre, D.. 1990. Discriminating between food and space limitation in benthic suspension feeders using self-thinning relationships. Marine Ecology Progress Series 65:15–23.
Gillooly, J. F., Brown, J. H., West, G. B., Savage, V. M., and Charnov, E. L.. 2001. Effects of size and temperature on metabolic rate. Science 293:2248–2251.
Gould, S. J., and Calloway, C. B.. 1980. Clams and brachiopods—ships that pass in the night. Paleobiology 6:383–396.
Hastings, A., Byers, J. E., Crooks, J. A., Cuddington, K., Jones, C. G., Lambrinos, J. G., Talley, T. S., and Wilson, W. G.. 2007. Ecosystem engineering in space and time. Ecology Letters 10:153–164.
Hendy, A. J. W. 2009. The influence of lithification on Cenozoic marine biodiversity trends. Paleobiology 35:51–62.
Holland, S. M., Miller, A. I., Meyer, D. L., and Dattilo, B. F.. 2001. The detection and importance of subtle biofacies within a single lithofacies: the Upper Ordovician Kope Formation of the Cincinnati, Ohio region. Palaios 16:205–217.
Honaker, J., King, G., and Blackwell, M.. 2011. Amelia II: a program for missing data. Journal of Statistical software 45:1–47.
Jones, C. G., Lawton, J. H., and Shachak, M.. 1994. Organisms as ecosystem engineers. Oikos 69:373–386.
Jones, C. G., Lawton, J. H., and Shachak, M.. 1997. Positive and negative effects of organisms as physical ecosystem engineers. Ecology 78:1946–1957.
Jordan, N., Allison, P. A., Hill, J., and Sutton, M. D.. 2015. Not all aragonitic molluscs are missing: taphonomy and significance of a unique shelly lagerstatte from the Jurassic of SW Britain. Lethaia 48:540–548.
Kidwell, S. M. 2005. Shell composition has no net impact on large-scale evolutionary patterns in mollusks. Science 307:914–917.
Knoll, A. H., and Follows, M. J.. 2016. A bottom-up perspective on ecosystem change in Mesozoic oceans. Proceedings of the Royal Society of London B 283(1841). http://dx.doi.org/10.1098/rspb.2016.1755.
Koch, C. F., and Sohl, N. F.. 1983. Preservational effects in paleoecological studies—Cretaceous mollusk examples. Paleobiology 9:26–34.
Kowalewski, M., Kiessling, W., Aberhan, M., Fursich, F. T., Scarponi, D., Wood, S. L. B., and Hoffmeister, A. P.. 2006. Ecological, taxonomic, and taphonomic components of the post-Paleozoic increase in sample-level species diversity of marine benthos. Paleobiology 32:533–561.
Liow, L. H., Reitan, T., and Harnik, P. G.. 2015. Ecological interactions on macroevolutionary time scales: clams and brachiopods are more than ships that pass in the night. Ecology Letters 18:1030–1039.
Mayr, E. 1960. The emergence of evolutionary novelties. Evolution after Darwin 1:349–380.
McAlester, A. L. 1962. Mode of preservation in early Paleozoic pelecypods and its morphologic and ecologic significance. Journal of Paleontology 36:69–73.
Miller, A. I., and Sepkoski, J. J.. 1988. Modeling bivalve diversification—the effect of interaction on a macroevolutionary system. Paleobiology 14:364–369.
Minchin, P. R. 1987. An evaluation of the relative robustness of techniques for ecological ordination. Vegetatio 69:89–107.
Mondal, S., and Harries, P. J.. 2016. The effect of taxonomic corrections on Phanerozoic generic richness trends in marine bivalves with a discussion on the clade's overall history. Paleobiology 42:157–171.
Parkhaev, P. Y. 2008. The early Cambrian radiation of Mollusca. Pp. 33–69 in Ponder, W. F. and Lindberg, D. R., eds. Phylogeny and evolution of the mollusca 33. University of California Press, Oakland, Calif.
Payne, J. L., Heim, N. A., Knope, M. L., and McClain, C. R.. 2014. Metabolic dominance of bivalves predates brachiopod diversity decline by more than 150 million years. Proceedings of the Royal Society of London B 281:20133122.
Powell, E. N., Staff, G. M., Stanton, R. J., and Callender, W. R.. 2001. Application of trophic transfer efficiency and age structure in the trophic analysis of fossil assemblages. Lethaia 34:97–118.
Powell, E. N., and Stanton, R. J.. 1985. Estimating biomass and energy-flow of mollusks in paleo-communities. Palaeontology 28:1–34.
Powell, E. N., and Stanton, R. J.. 1996. The application of size-frequency distribution and energy flow in paleoecologic analysis: an example using parautochthonous death assemblages from a variable salinity bay. Palaeogeography, Palaeoclimatology, Palaeoecology 124:195–231.
Pruss, S. B., Payne, J. L., and Westacott, S.. 2015. Taphonomic bias of selective silicification revealed by paired petrographic and insoluble residue analysis. Palaios 30:620–626.
Rodland, D. L., Simoes, M. G., Krause, R. A., and Kowalewski, M.. 2014. Stowing away on ships that pass in the night: sclerobiont assemblages on individually dated bivalve and brachiopod shells from a subtropical shelf. Palaios 29:170–183.
Scarponi, D., and Kowalewski, M.. 2004. Stratigraphic paleoecology: bathymetric signatures and sequence overprint of mollusk associations from upper Quaternary sequences of the Po Plain, Italy. Geology 32:989–992.
Schafer, J. L. 1997. Analysis of incomplete multivariate data. CRC Press, Boca Raton, Fla.
Scotese, C. R., and McKerrow, W. S.. 1990. Revised world maps and introduction. Geological Society of London Memoir 12:1–21.
Sepkoski, . 1996. Competition in macroevolution: the double wedge revisited. Pp. 211–255 in Valentine, J. W., Jablonski, D., Erwin, D. H., and Lipps, J. H., eds. Evolutionary paleobiology: in honor of James W. Valentine. University of Chicago Press, Chicago, Ill.
Sessa, J. A., Patzkowsky, M. E., and Bralower, T. J.. 2009. The impact of lithification on the diversity, size distribution, and recovery dynamics of marine invertebrate assemblages. Geology 37:115–118.
Sprinkle, J., and Rodgers, J. C.. 2010. Competition between a Pennsylvanian (Late Carboniferous) edrioasteroid and a bryozoan for living space on a brachiopod. Journal of Paleontology 84:356–359.
Staff, G., Powell, E. N., Stanton, R. J., and Cummins, H.. 1985. Biomass—is it a useful tool in paleocommunity reconstruction. Lethaia 18:209–232.
Steele-Petrovic, H. M. 1979. The physiological differences between articulate brachiopods and filter-feeding bivalves as a factor in the evolution of marine level-bottom communities. Palaeontology 22:101–134.
Sterren, A. F., and Cisterna, G. A.. 2010. Bivalves and brachiopods in the Carboniferous–Early Permian of Argentine Precordillera: diversification and faunal turnover in southwestern Gondwana. Geologica Acta 8:501–517.
Taylor, P. D., and Wilson, M. A.. 2003. Palaeoecology and evolution of marine hard substrate communities. Earth-Science Reviews 62:1–103.
Tomasovych, A. 2006. Brachiopod and bivalve ecology in the late Triassic (Alps, Austria): onshore-offshore replacements caused by variations in sediment and nutrient supply. Palaios 21:344–368.
Valentine, J. W., Jablonski, D., Kidwell, S., and Roy, K.. 2006. Assessing the fidelity of the fossil record by using marine bivalves. Proceedings of the National Academy of Sciences USA 103:6599–6604.
Vermeij, G. J. 1995. Economics, volcanos, and phanerozoic revolutions. Paleobiology 21:125–152.
Williams, A., and Carlson, S.. 2007. Affinities of brachiopods and trends in their evolution. Pp. 2822–2833 in Williams, A. et al. Brachiopoda 6, Supplement. Part H. Revised. Selden, P., ed. Treatise on invertebrate paleontology. Geological Society of America, New York, and University of Kansas, Lawrence.
Wright, P., Cherns, L., and Hodges, P.. 2003. Missing molluscs: field testing taphonomic loss in the Mesozoic through early large-scale aragonite dissolution. Geology 31:211–214.
Yochelson, E., White, J. Jr., and Gordon, M. Jr. 1967. Aragonite and calcite in mollusks from the Pennsylvanian Kendrick Shale. U.S. Geological Survey Professional Paper 575:76–78.