Hostname: page-component-848d4c4894-p2v8j Total loading time: 0.001 Render date: 2024-05-25T01:59:06.537Z Has data issue: false hasContentIssue false

The Varieties of Molecular Explanation

Published online by Cambridge University Press:  01 January 2022

Abstract

Reductionists in biology claim that all biological events can be explained in terms of genes and macromolecules alone, while antireductionists argue that some biological events must be explained at a higher level. The literature, however, does not distinguish between different kinds of molecular explanation. The goal of this article is to identify and analyze three such kinds. The analysis of molecular explanations herein carries an important philosophical implication; in shunning crude reductionism and extreme versions of holism, we can combine the insights of thoughtful reductionists with sophisticated antireductionism. When this is done, the question of explanatory reductionism becomes less substantial than often supposed.

Type
Research Article
Copyright
Copyright © The Philosophy of Science Association

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

Footnotes

I would like to express my gratitude to Laura Franklin-Hall, Alison Krueger, Anubav Vasudevan, Vicki Weafer, and, especially, Philip Kitcher for constructive comments on various versions of this article. In developing the ideas in this article, I benefited from a visiting position at the Laboratory for Stem Cell Biology and Pharmacology of Neurodegenerative Diseases at the University of Milan in the summer of 2010: many thanks to Elena Cattaneo and her research team for their support. Earlier drafts of this article were presented at the 2010 University of Pennsylvania Philosophy of Biology Workshop and at the 7th European Conference for Analytic Philosophy in Milan, Italy. The audiences at both venues provided helpful feedback. I am also thankful to two anonymous reviewers from Philosophy of Science for remarkably detailed commentaries and insightful suggestions and to Giulia Cugnasca for the illustration.

References

Bogen, Jim. 2005. “Regularities and Causality: Generalizations and Causal Explanations.” Studies in the History and Philosophy of Biology and Biomedical Sciences 36:397420.CrossRefGoogle ScholarPubMed
Culp, Sylvia, and Kitcher, Philip. 1989. “Theory Structure and Theory Change in Contemporary Molecular Biology.” British Journal for the Philosophy of Science 40:459–83.CrossRefGoogle Scholar
Darden, Lindley. 2008. “Thinking Again about Biological Mechanisms.” Philosophy of Science 75:958–69.CrossRefGoogle Scholar
Darden, Lindley, and Maull, Nancy L.. 1977. “Interfield Theories.” Philosophy of Science 44:4364.CrossRefGoogle Scholar
Davidson, Eric H. 2005. The Regulatory Genome: Gene Regulatory Networks in Development and Evolution. Burlington, MA: Elsevier.Google Scholar
Franklin-Hall, Laura. 2008. From a Microbiological Point of View. PhD diss., Columbia University.Google Scholar
Frost-Arnold, Greg. 2004. “How to Be an Anti-reductionist about Developmental Biology: Response to Laublicher and Wagner.” Biology and Philosophy 19 (1): 7591.CrossRefGoogle Scholar
Gilbert, Scott F. 2006. Developmental Biology. 8th ed. Sunderland, MA: Sinauer.Google Scholar
Gilbert, Scott F., Opitz, John M., and Raff, Rudolf A.. 1996. “Resynthesizing Evolutionary and Developmental Biology.” Developmental Biology 173:357–72.CrossRefGoogle ScholarPubMed
Griffiths, Paul E., and Gray, Russell D.. 1994. “Developmental Systems and Evolutionary Explanation.” Journal of Philosophy 91 (6): 277304.CrossRefGoogle Scholar
Hull, David L. 1974. Philosophy of Biological Science. Englewood Cliffs, NJ: Prentice-Hall.Google Scholar
Huneman, Philippe. 2010. “Topological Explanations and Robustness in Biological Sciences.” Synthese 177:213–45.CrossRefGoogle Scholar
Keller, Evelyn F. 2001. “Beyond the Gene but Beneath the Skin.” In Oyama et al. 2001, 299312.Google Scholar
Keller, Evelyn F.. 2010. The Mirage of a Space between Nature and Nurture. Durham, NC: Duke University Press.Google Scholar
Kincaid, Harold. 1990. “Molecular Biology and the Unity of Science.” Philosophy of Science 57:575–93.CrossRefGoogle Scholar
Kitcher, Philip. 1984. “1953 and All That: A Tale of Two Sciences.” Philosophical Review 96:335–73.Google Scholar
Kitcher, Philip. 1997. The Lives to Come: The Genetic Revolution and Human Possibilities. New York: Touchstone.Google Scholar
Kitcher, Philip. 1999. “The Hegemony of Molecular Biology.” Biology and Philosophy 14:195210.CrossRefGoogle Scholar
Kitcher, Philip. 2001. “Battling the Undead: How (and How Not) to Resist Genetic Determinism.” In Thinking about Evolution, ed. Singh, Rama S., Krimbas, Costas B., Paul, Diane, and Beatty, John, 396414. Cambridge: Cambridge University Press.Google Scholar
Laublicher, Manfred D., and Wagner, Günther P.. 2001. “How Molecular Is Molecular Developmental Biology?Biology and Philosophy 16:5368.Google Scholar
Lewontin, Richard C., and Levins, Richard. 1985. The Dialectical Biologist. Cambridge, MA: Harvard University Press.Google Scholar
Machamer, Peter K., Darden, Lindley, and Craver, Carl F.. 2000. “Thinking about Mechanisms.” Philosophy of Science 67:115.CrossRefGoogle Scholar
Maull, Nancy L. 1977. “Unifying Science without Reduction.” Studies in History and Philosophy of Science 8:143–62.CrossRefGoogle Scholar
Meinhardt, Hans. 1998. The Algorithmic Beauty of Sea Shells. New York: Springer.CrossRefGoogle Scholar
Murray, James. D. 1988. “How the Leopard Gets Its Spots.” Scientific American 258:8087.CrossRefGoogle Scholar
Murray, James. D.. 1989. Mathematical Biology. New York: Springer.CrossRefGoogle Scholar
Nagel, Ernest. 1961. The Structure of Science. New York: Harcourt Brace & Co.CrossRefGoogle Scholar
O’Malley, Maureen A. 2011. “Exploration, Iterativity and Kludging in Synthetic Biology.” Comptes Rendus Chimie 14:406–12.CrossRefGoogle Scholar
Oyama, Susan. 1985. The Ontogeny of Information. Cambridge: Cambridge University Press.Google Scholar
Oyama, Susan, Griffiths, Paul E., and Gray, Russell D., eds. 2001. Cycles of Contingency: Developmental Systems and Evolution. Bradford, MA: MIT Press.Google Scholar
Rosenberg, Alexander. 1978. “The Supervenience of Biological Concepts.” Philosophy of Science 45:368–86.CrossRefGoogle Scholar
Rosenberg, Alexander. 1997. “Reductionism Redux: Computing the Embryo.” Biology and Philosophy 12:445–70.CrossRefGoogle Scholar
Rosenberg, Alexander. 2006. Darwinian Reductionism; or, How to Stop Worrying and Love Molecular Biology. Chicago: University of Chicago Press.CrossRefGoogle Scholar
Sarkar, Sahotra. 1998. Genetics and Reductionism. Cambridge Studies in Biology and Philosophy. Cambridge: Cambridge University Press.CrossRefGoogle Scholar
Schaffner, Kenneth F. 1967. “Approaches to Reduction.” Philosophy of Science 34:137–47.CrossRefGoogle Scholar
Schaffner, Kenneth F.. 1993. Discovery and Explanation in Biology and Medicine. Chicago: University of Chicago Press.Google Scholar
Schaffner, Kenneth F.. 2006. “Reduction: The Chesire Cat Problem and a Return to Roots.” Synthese 151:377402.CrossRefGoogle Scholar
Sober, Elliott. 1999. “The Multiple Realizability Argument against Reductionism.” Philosophy of Science 66:542–64.CrossRefGoogle Scholar
Strevens, Michael. 2008. Depth: An Account of Scientific Explanation. Cambridge, MA: Harvard University Press.Google Scholar
Turing, Alan M. 1952. “The Chemical Basis of Morphogenesis.” Philosophical Transactions of the Royal Society of London B 237:3772.Google Scholar
Waters, C. Kenneth. 2007. “Causes That Make a Difference.” Journal of Philosophy 104 (11): 551–79.CrossRefGoogle Scholar
Wimsatt, William C. 1976. “Reductive Explanation, a Functional Account.” In PSA 1974: Proceedings of the 1974 Biennial Meeting of the Philosophy of Science Association, ed. Michalos, A., Hooker, C., Pearce, G., and Cohen, R. S., 671710. Dordrecht: Reidel.CrossRefGoogle Scholar
Wimsatt, William C.. 1994. “The Ontology of Complex Systems: Levels, Perspectives, and Causal Thickets.” Canadian Journal of Philosophy 20:207–74.Google Scholar
Wimsatt, William C.. 1997. “Aggregativity: Reductive Heuristics for Finding Emergence.” Philosophy of Science 64 (Proceedings): S372S384.CrossRefGoogle Scholar
Wimsatt, William C.. 2007. Re-engineering Philosophy for Limited Beings. Cambridge, MA: Harvard University Press.CrossRefGoogle Scholar
Wolpert, Lewis. 1969. “Positional Information and the Spatial Pattern of Cellular Formation.” Journal of Theoretical Biology 25:147.CrossRefGoogle Scholar
Woodward, James. 2010. “Causation in Biology: Stability, Specificity, and the Choice of Levels of Explanation.” Biology and Philosophy 25:287318.CrossRefGoogle Scholar
Yablo, Stephen. 1992. “Mental Causation.” Philosophical Review 101:254–80.CrossRefGoogle Scholar
Zuccato, Chiara, Valenza, Marta, and Cattaneo, Elena. 2010. “Molecular Mechanisms and Potential Therapeutical Targets in Huntington's Disease.” Physiological Review 90:905–81.CrossRefGoogle ScholarPubMed