In this paper, we focus on the base and tool calibration of a self-calibrated parallel robot. After the self-calibration of a parellel robot by using the built-in sensors in the passive joints, its kinematic transformation from the robot base to the mobile platform frame can be computed with sufficient accuracy. The base and tool calibration, hence, is to identify the kinematic errors in the fixed transformations from the world frame to the robot base frame and from the mobile platform frame to the tool (end-effector) frame in order to improve the absolute positioning accuracy of the robot. Using the mathematical tools from group theory and differential geometry, a simultaneous base and tool calibration model is formulated. Since the kinematic errors in a kinematic transformation can be represented by a twist, i.e. an element of se(3), the resultant calibration model is simple, explicit and geometrically meaningful. A least-square algorithm is employed to iteratively identify the error parameters. The simulation example shows that all the preset kinematic errors can be fully recovered within three to four iterations.