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A quantitative model of a cooperative two-state equilibrium in DNA: experimental tests, insights, and predictions - CORRIGENDUM

Published online by Cambridge University Press:  18 May 2021

J. Michael Schurr*
Affiliation:
Department of Chemistry, University of Washington, Box 351700, Seattle, WA98195-1700, USA
*
Author for correspondence: J. Michael Schurr, E-mail: jmschurr@zipcon.com
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Abstract

Type
Corrigendum
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
Copyright
Copyright © The Author(s), 2021. Published by Cambridge University Press

In the aforementioned article, the author and Publisher would like to correct four errors. These are as follows:

  1. (1) On the second line of page 6 the formula should read: κβ af = (Pf/ ha) k BT

  2. (2) The third row of Table 3 should be fb cir and not Fb cir. A revised table 3 is below:

    Table 3. Calculated properties of circular DNAs with 205–4362 bp in ~40 mM univalent cations plus 10 mM Mg2+ at 310 K.

    Beginning with αlin for a long linear DNA reckoned from Eq. (11), values were computed as described above for the 181 bp DNA. ET is reckoned from Eq. (16) and compared with experimental values obtained from topoisomer distributions (Horowitz and Wang, 1984) (HW). The dual values of the experimental ET and helix repeat, H, were obtained by least-squares fitting of the experimental topoisomer ratios for 205, 207, and 217 bp DNAs to equations (6b) and (5), respectively, of HW.

  3. (3) In Table 6, the final value should be 4.87 instead of 4.87s. A revised table 6 is below:

    Table 6. Calculated properties of different DNA models in 0.1 M NaCl at 293 K.

    The Nspr are the numbers of springs between the subunits of each model. The n 1 are the mean number of bp in the central domain, which is state b in Control DNA, and is state a in Insert DNA. The n2 and n3 are the numbers of subunits in the second and third domains outward from the center (counting those on both sides). The αu 1 and αu 2 values are reckoned as described previously (Schurr, 2019b).

  4. (4) On page 10, lines 22–24 of the right-hand column should read: “This implies a non-Gaussian distribution of writhe in the unconstrained DNA, which arises from thermally accessible figure eight configurations in addition to slightly writhed circles.”

The author and Publisher apologise for these errors.

References

Schurr, JM (2021). A quantitative model of a cooperative two-state equilibrium in DNA: experimental tests, insights, and predictions. Quarterly Reviews of Biophysics 54, e5, 125. https://doi.org/10.1017/S0033583521000032Google ScholarPubMed
Figure 0

Table 3. Calculated properties of circular DNAs with 205–4362 bp in ~40 mM univalent cations plus 10 mM Mg2+ at 310 K.

Figure 1

Table 6. Calculated properties of different DNA models in 0.1 M NaCl at 293 K.