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Improving the reproducibility in geoscientific papers: lessons learned from a Hackathon in climate science

Published online by Cambridge University Press:  16 January 2025

Alejandro Coca-Castro*
Affiliation:
Environment and Sustainability Grand Challenge, The Alan Turing Institute, London, UK
Anne Fouilloux
Affiliation:
Simula Research Laboratory, Oslo, Norway
Ricardo Barros Lourenço
Affiliation:
School of Earth, Environment & Society, McMaster University, Hamilton, ON, Canada
Andrew McDonald
Affiliation:
Department of Engineering, University of Cambridge, Cambridge, UK British Antarctic Survey, NERC, UKRI, Cambridge, UK
Yuhan Rao
Affiliation:
North Carolina Institute of Climate Studies, North Carolina State University, Asheville, NC, USA
J. Scott Hosking
Affiliation:
Environment and Sustainability Grand Challenge, The Alan Turing Institute, London, UK British Antarctic Survey, NERC, UKRI, Cambridge, UK
*
Corresponding author: Alejandro Coca-Castro; Email: acoca@turing.ac.uk

Abstract

In this paper, we explore the crucial role and challenges of computational reproducibility in geosciences, drawing insights from the Climate Informatics Reproducibility Challenge (CICR) in 2023. The competition aimed at (1) identifying common hurdles to reproduce computational climate science; and (2) creating interactive reproducible publications for selected papers of the Environmental Data Science journal. Based on lessons learned from the challenge, we emphasize the significance of open research practices, mentorship, transparency guidelines, as well as the use of technologies such as executable research objects for the reproduction of geoscientific published research. We propose a supportive framework of tools and infrastructure for evaluating reproducibility in geoscientific publications, with a case study for the climate informatics community. While the recommendations focus on future CIRCs, we expect they would be beneficial for wider umbrella of reproducibility initiatives in geosciences.

Information

Type
Position Paper
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2025. Published by Cambridge University Press
Figure 0

Figure 1. Matrix of reproducibility (The Turing Way, 2023); made available under the Creative Commons Attribution license (CC-BY 4.0).

Figure 1

Figure 2. Example of an interactive reproducibility report (left) authored by Malhotra et al. (2023) published in EDS book, and the target published paper (right) authored by Furner et al. (2022), published in the EDS journal.

Figure 2

Figure 3. Our concept of what reporting of reproducibility should look like for future editions of the Climate Informatics conference. Adapted from the supplementary material of Reinecke et al. (2022).

Supplementary material: File

Coca-Castro et al. supplementary material

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Author comment: Improving the reproducibility in geoscientific papers: lessons learned from a Hackathon in climate science — R0/PR1

Comments

Submission of Position Paper presented at Climate Informatics 2024

Review: Improving the reproducibility in geoscientific papers: lessons learned from a Hackathon in climate science — R0/PR2

Conflict of interest statement

Reviewer declares none.

Comments

>Summary: In this section please explain in your own words what problem the paper addresses and what it contributes to solving it.

This paper discusses reproducibility challenges in computational climate science, and makes several timely and valuable recommendations including durable executable research objects, and community platforms.

>Relevance and Impact: Is this paper a significant contribution to interdisciplinary climate informatics?

This paper provides several critical contributions to interdisciplinary climate informatics, with broad value to geoscience in general. The authors provide a seminal template for maturing reproducibility practices in computational climate science, including climate informatics through their intentionally architected reproduction competition, the Climate Informatics Reproducibility Challenge (CICR) in 2023, and comprehensive reflection and analysis of the experience. The co-productivity infused in the vision suggested by their Figure 3 adaptation is inspiring--citable replicability challenge outcomes (aka executable research objects) as part of an integrated publication lifecycle.

>Detailed comments:

A few minor suggestions for the final version of the paper:

- Section 3.1, I didn’t quite understand why this statement is true: “”The time required to reproduce results using Jupyter notebooks is considerably higher than traditional reproducibility reports. For example,...“”. Connecting the dots a touch more for the reader would help (e.g. as simple as a parenthetical or short statement).

- There are a number of small grammatical errors. Here are a few that I noticed: “”a prior“” should be “”apriori“”, “”hardware/operative“” should be “”hardware/operating“”, “”refer replicability“” should be “”refer to replicability“”.

Recommendation: Improving the reproducibility in geoscientific papers: lessons learned from a Hackathon in climate science — R0/PR3

Comments

This article was accepted into Climate Informatics 2024 Conference after the authors addressed the comments in the reviews provided. It has been accepted for publication in Environmental Data Science on the strength of the Climate Informatics Review Process.

Decision: Improving the reproducibility in geoscientific papers: lessons learned from a Hackathon in climate science — R0/PR4

Comments

No accompanying comment.