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Uncovering psychiatric phenotypes using unsupervised machine learning: A data-driven symptoms approach

Published online by Cambridge University Press:  21 February 2023

Amy Hofman
Affiliation:
Department of Epidemiology, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
Isabelle Lier
Affiliation:
Department of Epidemiology, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
M. Arfan Ikram
Affiliation:
Department of Epidemiology, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
Marijn van Wingerden
Affiliation:
Department of Cognitive Science and Artificial Intelligence, Tilburg University, Tilburg, The Netherlands
Annemarie I. Luik*
Affiliation:
Department of Epidemiology, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands Department of Child and Adolescent Psychiatry/Psychology, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
*
*Author for correspondence: Annemarie I. Luik, E-mail: a.luik@erasmusmc.nl

Abstract

Background

Current categorical classification systems of psychiatric diagnoses lead to heterogeneity of symptoms within disorders and common co-occurrence of disorders. We investigated the heterogeneous and overlapping nature of symptom endorsement in a population-based sample across three of the most common categories of psychiatric disorders: depressive disorders, anxiety disorders, and sleep–wake disorders using unsupervised machine learning approaches.

Methods

We assessed a total of 43 symptoms in a discovery sample of 6,602 participants of the population-based Rotterdam Study between 2009 and 2013, and in a replication sample of 3,005 participants between 2016 and 2020. Symptoms were assessed using the Center for Epidemiologic Studies Depression Scale, the Hospital Anxiety and Depression Scale, and the Pittsburgh Sleep Quality Index. Hierarchical clustering analysis was applied on test items and participants to investigate common patterns of symptoms co-occurrence, and further quantitatively investigated with clustering methods to find groups that may represent similar psychiatric phenotypes.

Results

First, clustering analyses of the questionnaire items suggested a three-cluster solution representing clusters of “mixed” symptoms, “depressed affect and nervousness”, and “troubled sleep and interpersonal problems”. A highly similar clustering solution was independently established in the replication sample. Second, four groups of participants could be separated, and these groups scored differently on the item clusters.

Conclusions

We identified three clusters of psychiatric symptoms that most commonly co-occur in a population-based sample. These symptoms clustered stable over samples, but across the topics of depression, anxiety, and poor sleep. We identified four groups of participants that share (sub)clinical symptoms and might benefit from similar prevention or treatment strategies, despite potentially diverging, or lack of, diagnoses.

Information

Type
Research Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2023. Published by Cambridge University Press on behalf of the European Psychiatric Association
Figure 0

Table 1. Characteristics of the study sample.

Figure 1

Table 2. The three-cluster solution of hierarchical clustering on test items in the discovery sample.

Figure 2

Figure 1. Dendrogram that represents the three-cluster solution of hierarchical clustering analysis on test items. Items that often co-occur cluster at lower levels (y-axis) in the dendrogram, while items that less often co-occur cluster only at higher level. The Jaccard index was used as the proximity measure and Ward’s method as the linkage criterion. Description of questionnaire items can be found in Table 3. CES-D, Center for Epidemiologic Studies Depression Scale; HADS, Hospital Anxiety and Depression Scale; PSQI, Pittsburgh Sleep Quality Index.

Figure 3

Table 3. The three-cluster solution of hierarchical clustering on test items.

Figure 4

Figure 2. Participant groups and their scores on each item cluster. The boxplots show the aggregate cluster scores (y-axis) of the four identified participant groups (x-axis) on the three clusters of test items. Item cluster 1, mixed; item cluster 2, depressed affect and nervousness; item cluster 3, troubled sleep and interpersonal problems.

Figure 5

Figure 3. Clustering of participants with a known diagnosis of depression and/or anxiety. The left panel shows the contourplot that represents the cluster solution within a subsample of participants with a known diagnosis of depression (i.e., major depressive disorder of dysthymia, N = 40), anxiety disorder (N = 352), or both (N = 21), based on MClust Gaussian finite mixture modeling. The right panel indicates original diagnosis of participants within these data-driven clusters. Red, anxiety; blue, depression; green, comorbid.

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