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Hepatic transcriptomics analysis reveals that fructose intervention down-regulated xenobiotics-metabolising enzymes through aryl hydrocarbon receptor signalling suppression in C57BL/6N mice

Published online by Cambridge University Press:  02 July 2019

Jeong Hoon Pan
Affiliation:
School of Human Environmental Sciences, University of Arkansas, Fayetteville, AR 72701, USA
Jingsi Tang
Affiliation:
School of Human Environmental Sciences, University of Arkansas, Fayetteville, AR 72701, USA Department of Animal Science, University of Arkansas, Fayetteville, AR 72701, USA
Kaleigh E. Beane
Affiliation:
School of Human Environmental Sciences, University of Arkansas, Fayetteville, AR 72701, USA
Mersady C. Redding
Affiliation:
School of Human Environmental Sciences, University of Arkansas, Fayetteville, AR 72701, USA
Yun Jeong Cho
Affiliation:
School of Human Environmental Sciences, University of Arkansas, Fayetteville, AR 72701, USA
Young Jun Kim
Affiliation:
Department of Food and Biotechnology, Korea University, Sejong 30019, Republic of Korea
Jiangchao Zhao
Affiliation:
Department of Animal Science, University of Arkansas, Fayetteville, AR 72701, USA
Eui-Cheol Shin
Affiliation:
Department of Food Science, Gyeongnam National University of Science and Technology, Jinju 52725, Republic of Korea
Jin Hyup Lee
Affiliation:
Department of Food and Biotechnology, Korea University, Sejong 30019, Republic of Korea
Byungwhi C. Kong*
Affiliation:
Department of Poultry Science, University of Arkansas, Fayetteville, AR 72701, USA
Jae Kyeom Kim*
Affiliation:
School of Human Environmental Sciences, University of Arkansas, Fayetteville, AR 72701, USA
*
*Corresponding authors: J. K. Kim, email jkk003@uark.edu; B. C. Kong, email bkong@uark.edu
*Corresponding authors: J. K. Kim, email jkk003@uark.edu; B. C. Kong, email bkong@uark.edu
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Abstract

For decades, fructose intake has been recognised as an environmental risk for metabolic syndromes and diseases. Here we comprehensively examined the effects of fructose intake on mice liver transcriptomes. Fructose-supplemented water (34 %; w/v) was fed to both male and female C57BL/6N mice at their free will for 6 weeks, followed by hepatic transcriptomics analysis. Based on our criteria, differentially expressed genes (DEG) were selected and subjected to further computational analyses to predict key pathways and upstream regulator(s). Subsequently, predicted genes and pathways from the transcriptomics dataset were validated via quantitative RT-PCR analyses. As a result, we identified eighty-nine down-regulated and eighty-eight up-regulated mRNA in fructose-fed mice livers. These DEG were subjected to bioinformatics analysis tools in which DEG were mainly enriched in xenobiotic metabolic processes; further, in the Ingenuity Pathway Analysis software, it was suggested that the aryl hydrocarbon receptor (AhR) is an upstream regulator governing overall changes, while fructose suppresses the AhR signalling pathway. In our quantitative RT-PCR validation, we confirmed that fructose suppressed AhR signalling through modulating expressions of transcription factor (AhR nuclear translocator; Arnt) and upstream regulators (Ncor2, and Rb1). Altogether, we demonstrated that ad libitum fructose intake suppresses the canonical AhR signalling pathway in C57BL/6N mice liver. Based on our current observations, further studies are warranted, especially with regard to the effects of co-exposure to fructose on (1) other types of carcinogens and (2) inflammation-inducing agents (or even diets such as a high-fat diet), to find implications of fructose-induced AhR suppression.

Information

Type
Full Papers
Copyright
© The Authors 2019 
Figure 0

Fig. 1. Analyses of transcriptomics dataset followed by computational analyses and quantitative RT-PCR (qPCR) validation: a flowchart.

Figure 1

Fig. 2. Ad libitum fructose intake did not change body weight and liver weight in C57BL/6N mice. Data are expressed as means with their standard errors (n 12 per group; both male and female; n 6 each). Body weight was monitored throughout the study period, while liver and adipose tissue weights were measured after euthanising mice. No differences were noted in average body weight (a) or tissue weights (b). All data were analysed by a two-tailed Welch’s t test. P ≤0·05 was considered statistically significant (SAS version 9.4; SAS Institute Inc.). -○-, □, Control group; -•-, ▪, fructose group.

Figure 2

Fig. 3. Volcano plot, heatmap, Protein Annotation Through Evolutionary Relationships Gene Ontology (PANTHER GO) analysis and Ingenuity Pathway Analysis (IPA) Upstream Regulator Analysis. To visualise changes in the transcriptome, a volcano plot (a) and heat map (b) were generated using the R software package (R Studio version 3.5.2; The R Foundation). Further, shortlisted mRNA were subjected to the PANTHER over-representation test in which the GO-Slim Biological Process terms were used (c). Last, the short list was subjected to the IPA Upstream Regulator Analysis to identify upstream regulator(s) for differentially expressed genes and related canonical pathways in response to fructose intervention (d). Of the top twenty upstream regulators identified, aryl hydrocarbon receptor (Ahr), Nr1l2 and Nr0b2 were the three regulators involved in xenobiotics-metabolising enzymes. CON, control; FRU, fructose.

Figure 3

Table 1. Significantly over-represented biological processes for hepatic transcriptome of fructose-fed mice*

Figure 4

Table 2. Top twenty upstream regulators of shortlisted mRNA*

Figure 5

Fig. 4. Ad libitum fructose intake suppressed the canonical aryl hydrocarbon receptor (AhR) signalling pathway: validation experiments. Data are expressed as means with their standard errors (n 4 per group). First, as a representative gene of aryl hydrocarbon receptor (AhR) signalling, Cyp1a2 expression was validated using quantitative RT-PCR (qPCR) (a). Further, downstream genes of AhR signalling pathway were validated: Ugt1a1, Nqo1, Gsta2, Gsta4 and Gstp1 (b). To examine regulatory mechanisms, gene expressions of transcription factors (Ahr and AhR nuclear translocator (Arnt) (c)), negative regulators (Nr2f1, Ncor2 and Nrob2 (d)) and positive regulators (Sp1 and Rb1 (e)) were assessed. All data were analysed by a two-tailed Welch’s t test. P ≤0·05 was considered statistically significant (SAS version 9.4; SAS Institute Inc.). *P<0·05; **P<0·01; ***P<0·001. □, Control group; ▪, fructose group.

Figure 6

Fig. 5. Fructose treatment suppressed aryl hydrocarbon receptor (Ahr), AhR nuclear translocator (Arnt) and cytochrome P450 1A2 (Cyp1a2) mRNA expression in mouse and human hepatocytes. Data are expressed as means with their standard errors (n 6 per group). Expression of key genes in the AhR signalling pathway was validated using quantitative RT-PCR in mouse hepatocyte (AML12 (a)) and human hepatocellular carcinoma (HepG2 (b)) cells. Expression levels of Ahr (AHR), Arnt (ARNT) and Cyp1a2 (CYP1A2) were examined in cells treated with either 50 mm glucose (control; □) or 50 mm fructose (▪) for 72 h. All data were analysed by a two-tailed Welch’s t test. P ≤0·05 was considered statistically significant (SAS version 9.4; SAS Institute Inc.).

Figure 7

Fig. 6. Schematic pathway. Our unbiased transcriptomics analysis as well as quantitative RT-PCR validation experiments revealed that 6 weeks of ad libitum fructose intake can suppress the canonical aryl hydrocarbon receptor (AhR) signalling pathway. ARNT, AhR nuclear translocator; BTE, biotransformation enzymes.

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