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Differences and similarities between the genetic architecture of lifetime substance use across different substances

Published online by Cambridge University Press:  30 July 2025

Uri Bright
Affiliation:
Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA
Cassie Overstreet
Affiliation:
Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA Department of Psychiatry, Veterans Affairs Connecticut Healthcare System, West Haven, CT, USA
Daniel F. Levey
Affiliation:
Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA Department of Psychiatry, Veterans Affairs Connecticut Healthcare System, West Haven, CT, USA
Joel Gelernter*
Affiliation:
Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA Department of Psychiatry, Veterans Affairs Connecticut Healthcare System, West Haven, CT, USA Departments of Genetics and Neuroscience, Yale School of Medicine, New Haven, CT, USA
*
Corresponding author: Joel Gelernter; Email: joel.gelernter@yale.edu
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Abstract

Background

Illicit drug use may lead to dependence on those drugs, is associated with various psychiatric disorders, and can have hazardous, sometimes life-threatening, consequences. We investigated the genetic architecture underlying the lifetime use (LU) of several drugs, individually and in combination.

Methods

We conducted genome-wide association studies of LU of cocaine, methamphetamine, inhalants, illegal opioids, prescription opioids, and prescription stimulants in European (EUR), African (AFR), and Latin American (AMR)-ancestry subjects (cases ranging from n = 4,900–21,850 [EUR], n = 519–9,802 [AFR], and n = 899–5,012 [AMR]; controls from n = 93,763–110,658 [EUR], n = 37,261–46,509 [AFR], and n = 31,412–35,501 [AMR]). We also investigated the use of illicit drugs of any kind and the total count of drugs a person has ever used. Then, we assessed the global and local genetic correlations between substance LU (SubLU) traits and their genetic correlations with other traits.

Results

We found numerous genes that affect SubLU traits, with no overlap among the significant loci between traits, suggesting that unique genetic factors may differentially affect the use of different drugs. Nevertheless, the genetic correlations between SubLU traits were very strong; however, the phenotypic correlations were moderate. There were strong genetic correlations between various SubLU traits and psychiatric traits, most notably opioid use disorder, cannabis use disorder, problematic alcohol use, and suicidality.

Conclusions

Our findings provide insights into the genetic basis of substance use, identifying several novel genes associated with SubLU traits. This study can provide an improved understanding of the biology underlying SubLU and could potentially facilitate future risk assessments for the use of illicit and hazardous drugs.

Information

Type
Original Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2025. Published by Cambridge University Press
Figure 0

Table 1. Sample size for each trait

Figure 1

Table 2. Lead SNPs of substance lifetime use traits

Figure 2

Figure 1. Manhattan plot of substance lifetime use (LU) (LU of one or more of the drugs discussed in this study) in (a) EUR (nCases = 34,017, nControls = 81,618); (b) cross-ancestry meta-analysis (nCases = 54,237, nConrols = 144,923), and number of lifetime substances used (the number of different drugs, of the drugs discussed in this study, and a subject used in his or her lifetime; a quantitative trait with a range of 0–6) in (c) EUR (n = 115,635); (d) cross-ancestry meta-analysis (n = 199,190).

Figure 3

Figure 2. (a) Inter-trait genetic correlations between all six individual substance lifetime use (LU) traits in EUR. (b) Inter-trait phenotypic correlations between all six individual substance LU traits in EUR. (c) Genetic correlations between all six individual and cumulative substance LU traits in EUR and a selected list of traits. Statistically nonsignificant values are in dark gray Note: ADHD, ‘attention-deficit/hyperactivity disorder’; BD, ‘bipolar disorder’; CanUD, ‘cannabis use disorder’; ns, ‘nonsignificant’; OUD, ‘opioid use disorder’; PAU, ‘problematic alcohol use’; PTSD, ‘post-traumatic stress disorder’ [Deak et al., 2022; Demontis et al., 2023; Doherty et al., 2018; Johnston et al., 2019; Levey et al., 2023; Levey et al., 2021; Nievergelt et al., 2024; O’Connell et al., 2025; Trubetskoy et al., 2022; Watanabe et al., 2022; Zhou et al., 2023].

Figure 4

Figure 3. Path diagram for genomic structural equation modeling for confirmatory factor analysis (CFA) results of the two-factor model. The diagram presents the results of the correlated two-factor CFA model of 15 substance use, psychiatric, and chronic pain traits for European ancestry participants. Standardized estimates are provided for each path with standard errors included in parentheses.

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