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Reduction of dietary glycaemic load modifies the expression of microRNA potentially associated with energy balance and cancer pathways in pre-menopausal women

Published online by Cambridge University Press:  30 May 2012

Susan E. McCann*
Affiliation:
Department of Cancer Prevention and Control, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY14263, USA
Song Liu*
Affiliation:
Department of Biostatistics, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY14263, USA
Dan Wang
Affiliation:
Department of Biostatistics, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY14263, USA
Jie Shen
Affiliation:
Department of Cancer Prevention and Control, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY14263, USA
Qiang Hu
Affiliation:
Department of Biostatistics, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY14263, USA
Chi-Chen Hong
Affiliation:
Department of Cancer Prevention and Control, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY14263, USA
Vicky A. Newman
Affiliation:
Cancer Prevention and Control Program, Moores UCSD Cancer Center, La Jolla, CA, USA
Hua Zhao
Affiliation:
Department of Cancer Prevention and Control, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY14263, USA
*
*Corresponding authors: Dr S. E. McCann, E-mail: susan.mccann@roswellpark.org; Dr S. Liu, E-mail: song.liu@roswellpark.org
*Corresponding authors: Dr S. E. McCann, E-mail: susan.mccann@roswellpark.org; Dr S. Liu, E-mail: song.liu@roswellpark.org
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Abstract

Energy metabolism, insulin resistance and adiposity have been implicated in breast cancer, but dietary interventions to reduce breast cancer morbidity and mortality have had limited success. MicroRNA (miRNA) are short, non-coding RNA that participate in the control of metabolic processes through the post-transcriptional modification of RNA. We investigated the effect of a low-glycaemic load dietary intervention on miRNA expression, with subsequent bioinformatics pathway analyses to explore metabolic pathways potentially affected by the diet. Total RNA, including miRNA, was isolated from the serum of fourteen otherwise healthy pre-menopausal women with a high breast cancer risk participating in a 12-month dietary intervention designed to lower glycaemic load by at least 15 % from baseline. Genome-wide miRNA expression was conducted using Illumina BeadChips. In the intervention subjects, three differentially expressed miRNA were validated by real-time (RT)-PCR, and in the twenty control participants, four top differentially expressed miRNA were evaluated to confirm a diet effect. In post-intervention v. baseline serum, twenty miRNA were found to be differentially expressed, with twelve up-regulated and eight down-regulated. These differentially expressed miRNA were predicted to be potentially associated with energy balance and cancer pathways based on exploratory enrichment analysis. Quantitative RT-PCR validations in the controls confirmed that the observed miRNA differential expression was dietary intervention induced. Manipulation of dietary glycaemic load has the potential to modify the expression of multiple miRNA predicted to be involved in energy balance and cancer pathways. Further research is necessary to confirm the role of these miRNA in the control of energy metabolism and relationships with cancer-related processes.

Information

Type
Full Papers
Copyright
Copyright © The Authors 2012
Figure 0

Table 1 Baseline characteristics of the participants in the Diet and Breast Health Study, Roswell Park Cancer Institute (Mean values and standard deviations; number of participants and percentages)

Figure 1

Fig. 1 Change in mean daily glycaemic load across time × intervention assignment. , Intervention; , control. Values are least-squares means estimated with mixed models adjusting for visit-specific energy intake and baseline glycaemic load.

Figure 2

Table 2 Differentially expressed microRNA (FDR <0·1) with at least 2-fold expression change obtained from the comparison of post-intervention v. baseline

Figure 3

Fig. 2 Hierarchical clustering of participant samples based on differentially expressed genes with at least 2-fold change and controlled by a false discovery rate of 0·1, as inferred from post-intervention (, 4 month) v. baseline (). In the clustering heat map, red indicates up-regulated while green indicates down-regulated. In the sample clustering dendrogram, blue indicates post-intervention samples while yellow indicates baseline samples.

Figure 4

Table 3 Enriched pathways in the genes predicted to be targeted by differentially expressed microRNA obtained from the comparison of post-intervention v. baseline samples

Figure 5

Fig. 3 Quantitative real-time (qRT)-PCR validations of let-7b* as a differentially expressed microRNA identified by microarray. (a) Data from qRT-PCR experiments. (b) Data from microarray experiments. The red point denotes the normalised expression value from baseline samples, while the black point denotes the normalised expression value from post-intervention samples. The normalised expression value is shown in log2 scale.

Figure 6

Fig. 4 Quantitative real-time (qRT)-PCR validations of miR-130a* and miR-663b as differentially expressed microRNA identified by microarray. (a, b) Data for miR-130a* from the qRT-PCR and microarray experiments, respectively. (c, d) Data for miR-663b from the qRT-PCR and microarray experiments, respectively. The red point denotes the normalised expression value from baseline samples, while the black point denotes the normalised expression value from post-intervention samples. The normalised expression value is shown in log2 scale.

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