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Zinc and DHA have opposing effects on the expression levels of histones H3 and H4 in human neuronal cells

Published online by Cambridge University Press:  14 September 2009

Cenk Suphioglu*
Affiliation:
Faculty of Science and Technology, School of Life and Environmental Sciences, Deakin University, 221 Burwood Highway, Burwood, Vic3125, Australia
Nadia Sadli
Affiliation:
Faculty of Science and Technology, School of Life and Environmental Sciences, Deakin University, 221 Burwood Highway, Burwood, Vic3125, Australia
Damon Coonan
Affiliation:
Faculty of Science and Technology, School of Life and Environmental Sciences, Deakin University, 221 Burwood Highway, Burwood, Vic3125, Australia
Loveleen Kumar
Affiliation:
Faculty of Science and Technology, School of Life and Environmental Sciences, Deakin University, 221 Burwood Highway, Burwood, Vic3125, Australia
Damitha De Mel
Affiliation:
Faculty of Science and Technology, School of Life and Environmental Sciences, Deakin University, 221 Burwood Highway, Burwood, Vic3125, Australia
Jessica Lesheim
Affiliation:
Faculty of Science and Technology, School of Life and Environmental Sciences, Deakin University, 221 Burwood Highway, Burwood, Vic3125, Australia
Andrew J. Sinclair
Affiliation:
Faculty of Health, Medicine, Nursing and Behavioural Sciences, School of Exercise and Nutrition Sciences, Deakin University, 221 Burwood Highway, Burwood, Vic3125, Australia
Leigh Ackland
Affiliation:
Faculty of Science and Technology, School of Life and Environmental Sciences, Deakin University, 221 Burwood Highway, Burwood, Vic3125, Australia
*
*Corresponding author: Dr Cenk Suphioglu, fax +61 3 9251 7328, email cenk.suphioglu@deakin.edu.au
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Abstract

Zn and DHA have putative neuroprotective effects and these two essential nutrients are known to interact biochemically. We aimed to identify novel protein candidates that are differentially expressed in human neuronal cell line M17 in response to Zn and DHA that would explain the molecular basis of this interaction. Two-dimensional gel electrophoresis and MS were applied to identify major protein expression changes in the protein lysates of human Ml7 neuronal cells that had been grown in the presence and absence of Zn and DHA. Proteomic findings were further investigated using Western immunoblot and real-time PCR analyses. Four protein spots, which had significant differential expression, were identified and selected for in-gel trypsin digestion followed by matrix-assisted laser desorption ionisation MS analysis. The resultant peptide mass fingerprint for each spot allowed their respective identities to be deduced. Two human histone variants H3 and H4 were identified. Both H3 and H4 were downregulated by Zn in the absence of DHA (Zn effect) and upregulated by DHA (DHA effect) in the presence of Zn (physiological condition). These proteomic findings were further supported by Western immunoblot and real-time PCR analyses using H3- and H4-specific monoclonal antibodies and oligonucleotide primers, respectively. We propose that dietary Zn and DHA cause a global effect on gene expression, which is mediated by histones. Such novel information provides possible clues to the molecular basis of neuroprotection by Zn and DHA that may contribute to the future treatment, prevention and management of neurodegenerative diseases such as Alzheimer's disease.

Information

Type
Full Papers
Copyright
Copyright © The Authors 2009
Figure 0

Fig. 1 Effect of zinc on protein expression in M17 human neuronal cells. Proteome expression of M17 cells grown in the absence of DHA and without zinc (a) or with zinc (final concentration of 5 μm) (b). Five microlitres of molecular mass markers (Mr) were run concurrently and gels stained with SYPRO Ruby staining. Protein spots of significant difference ( ← ) were subjected to MS analysis (S1, S2).

Figure 1

Fig. 2 Effect of DHA on protein expression in M17 human neuronal cells. Proteome expression of M17 cells grown in the presence of zinc (final concentration of 5 μm) and no DHA (a) or with 10 μg/ml DHA (b). Five microlitres of molecular mass markers (Mr) were run concurrently and gels stained with SYPRO Ruby staining. Protein spots of significant difference ( ← ) were subjected to MS analysis (S3, S4).

Figure 2

Table 1 MS protein identity summary table*

Figure 3

Fig. 3 Western blot analysis of H3 (a) and β-actin (b) expression in M17 cells grown in media supplemented with (+) or without ( − ) zinc (final concentration of 5 μm) and with (+) or without ( − ) 10 μg/ml DHA. (c) Densitometric analysis in arbitrary units (AU) are shown as means with their standard errors (n 3), *P < 0·05. Molecular mass protein markers (Mr) are indicated on the left of each gel.

Figure 4

Fig. 4 Western blot analysis of H4 (a) and β-actin (b) expression in M17 cells grown in media supplemented with (+) or without ( − ) zinc (final concentration of 5 μm) and with (+) or without ( − ) 10 μg/ml DHA. (c) Densitometric analysis in arbitrary units (AU) are shown as means with their standard errors (n 3), *P < 0·05. Molecular mass protein markers (Mr) are indicated on the left of each gel.

Figure 5

Fig. 5 Real-time PCR analysis of H3 (a) and H4 (b) expression in M17 cells treated with zinc-deficient ( − ) and zinc (final concentration of 5 μm)-supplemented (+) media containing no ( − ) or 10 μg/ml DHA (+). Negative values (less than zero) refer to downregulation/reduction and positive values (more than zero) refer to upregulation/increase in fold difference of histone H3 and H4 mRNA between the treatments. Fold difference is the difference in mRNA levels between – and + zinc (zinc effect) and – and + DHA (DHA effect). Data are shown as means with their standard errors (n 3), *P < 0·05, compared to control ( − DHA/ − zinc or − DHA/+zinc).

Figure 6

Table 2 Nucleic (NA) and amino acid (AA) identity and similarity between human histones H3 and H4*

Figure 7

Table 3 Metal response elements (MRE), as transcription-binding motifs, in H3 and H4 with their respective chromosome locations and nucleic acid (NA) position upstream from the start codon in base pairs (bp) identified from National Center for Biotechnology Information database searches (http://www.ncbi.nlm.nih.gov/sites/entrez)