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Target-site mechanism confers resistance pattern of ACCase inhibitors in bearded sprangletop (Leptochloa fusca ssp. fascicularis) from California

Published online by Cambridge University Press:  31 May 2024

Rasim Unan
Affiliation:
Postdoctoral Researcher, Department of Plant Science, University of California, Davis, CA, USA
Aaron Becerra-Alvarez
Affiliation:
Graduate Student Researcher, Department of Plant Sciences, University of California, Davis, CA, USA
Kassim Al-Khatib*
Affiliation:
Professor, Department of Plant Sciences, University of California, Davis, CA, USA
*
Corresponding author: Kassim Al-Khatib; Email: kalkhatib@ucdavis.edu
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Abstract

Bearded sprangletop is a problematic native grass weed in California’s rice fields. The widespread and extensive use of acetyl-CoA carboxylase (ACCase)–inhibiting herbicides, such as cyhalofop-p-butyl (cyhalofop), has led to speculation that biotypes of bearded sprangletop have developed herbicide resistance to ACCase. The aim of this study was to evaluate suspected resistant bearded sprangletop biotypes, R1, R2, R3, and the susceptible biotype, S1, in terms of their levels of resistance to three ACCase-inhibiting herbicides and to characterize the molecular mechanisms of resistance. Dose–response experiments suggested that the biotype R1, R2, and R3 had high-level resistance to cyhalofop and to quizalofop-p-ethyl (quizalofop), but not clethodim. The study determined that the resistance to ACCase inhibitors was a target-site mechanism resulting from nucleotide substitution. The carboxyl transferase (CT) domain of the ACCase gene’s sequence analysis revealed the substitutions Trp-2027-Cys for R1 and R2 biotypes and Ile-2041-Asn for the R3 biotype. This study revealed the presence of target-site resistance to cyhalofop and quizalofop in at least two mutation points in representative biotypes of bearded sprangletop in California. This research highlights the significance of careful herbicide selection due to weed species responding quite rapidly to selection pressure, so as to aid in managing bearded sprangletop in rice fields.

Information

Type
Research Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2024. Published by Cambridge University Press on behalf of Weed Science Society of America
Figure 0

Table 1. Clethodim, cyhalofop-p-butyl and quizalofop-p-ethyl application doses used in this study on the suspected herbicide-resistant bearded sprangletop biotypes.

Figure 1

Table 2. Primers of the ACCase gene fragment of bearded sprangletop.

Figure 2

Table 3. Average cyhalofop, quizalofop, and clethodim dose that cause 50% dry-weight reduction (ED50) and resistance index (RI) of bearded sprangletop biotypes.

Figure 3

Figure 1. Effect of cyhalofop on the growth biomass of R1 (Δ), R2 (+), R3 (×), and S (o) biotypes of bearded sprangletop. S was the susceptible biotype; R1, R2, and R3 were resistant biotypes. Each point represents the average of six measurements (two runs and three replications) with standard error of the mean. Dose–response curves were generated by nonlinear regression using a log-logistic model. Vertical error bars represent the 95% confidence intervals at ED50.

Figure 4

Figure 2. Effect of quizalofop on the growth biomass of R1 (Δ), R2 (+), R3 (×), and S (o) biotypes of bearded sprangletop. S was the susceptible biotype; R1, R2, and R3 were resistant biotypes. Each point represents the average of six measurements (two runs and three replications) with standard error of the mean. Dose–response curves were generated by nonlinear regression using a log-logistic model. Vertical error bars represent the 95% confidence intervals at ED50.

Figure 5

Figure 3. Effect of clethodim on the growth biomass of R1 (Δ), R2 (+), R3 (×), and S (o) biotypes of bearded sprangletop. S1, R1, R2, and R3 were all susceptible to clethodim. Each point represents the average of six measurements (two runs and three replications) with standard error of the mean. Dose–response curves were generated by nonlinear regression using a log-logistic model. Vertical error bars represent the 95% confidence intervals at ED50.

Figure 6

Figure 4. ACCase amino acid sequences of the amplified fragment of Leptochloa chinensis (L.) Nees, the susceptible (S1) and resistant (R1, R2, and R3) biotypes of bearded sprangletop. The black boxes illustrate the amino acid substitution from tryptophan (W) 2027 to cytosine (C) in R1 and R2, and from isoleucine (I) 2041 to leucine (N) in R3. The Leptochloa chinensis (L.) Nees (GenBank: QWJ75145.1) and susceptible bearded sprangletop (S1) ACCase sequence were used as references.