Introduction
The genus Strongyloides (Nematoda; Strongyloididae) comprises over 50 species of parasitic nematodes infecting a wide range of vertebrates, including humans (Homo sapiens) and their major companion animals, dogs (Canis lupus familiaris) and cats (Felis catus) (Speare, Reference Speare1986; Al-Jawabreh et al., Reference Al-Jawabreh, Anderson, Atkinson, Bickford-Smith, Bradbury, Breloer, Bryant, Buonfrate, Cadd, Crooks, Deiana, Grant, Hallem, Hedtke, Hunt, Khieu, Kikuchi, Kounosu, Lastik, van Lieshout, Liu, McSorley, McVeigh, Mousley, Murcott, Nevin, Nosková, Pomari, Reynolds, Ross, Streit, Suleiman, Tiberti and Viney2024a). Despite their medical and veterinary significance, few sources provide comprehensive taxonomic analyses of Strongyloides spp. in these hosts, and those that do are now several decades old (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986, Reference Speare and Grove1989; Grove, Reference Grove1996). Moreover, no single reference has systematically collated the molecular genetic data accumulated over the past 4 decades. This review aims to fill that gap by providing an updated synthesis of morphological and molecular evidence relevant to Strongyloides infecting humans, dogs and cats, to support researchers and diagnosticians working with these parasites in both medical and veterinary contexts.
Two species are known to infect humans: Strongyloides stercoralis (Bavay, Reference Bavay1876) and Strongyloides fuelleborni (von Linstow O, Reference von Linstow1905). The latter is currently divided into 2 subspecies, Strongyloides fuelleborni subsp. fuelleborni (von Linstow O, Reference von Linstow1905) and Strongyloides fuelleborni subsp. kellyi (Viney et al., Reference Viney, Ashford and Barnish1991). S. stercoralis has a cosmopolitan distribution but occurs predominantly in the tropics and sub-tropics, with an estimated 613.9 million people (95% CI: 313.1–910.1) infected globally as of 2017 (Buonfrate et al., Reference Buonfrate, Bisanzio, Giorli, Odermatt, Fürst, Greenaway, French, Reithinger, Gobbi, Montresor and Bisoffi2020). S. f. fuelleborni parasitizes Old World non-human primates (NHPs) (Zhao et al., Reference Zhao, Constantinoiu and Bradbury2025a, Reference Zhao, Constantinoiu and Bradburyb). It has been reported in humans from sub-Saharan Africa, Southeast Asia and South Asia (Pampiglione and Ricciardi, Reference Pampiglione and Ricciardi1972b; Hira and Patel, Reference Hira and Patel1977, Reference Hira and Patel1980; Hasegawa et al., Reference Hasegawa, Sato, Fujita, Nguema, Nobusue, Miyagi, Kooriyama, Takenoshita, Noda and Sato2010; Thanchomnang et al., Reference Thanchomnang, Intapan, Sanpool, Rodpai, Tourtip, Yahom, Kullawat, Radomyos, Thammasiri and Maleewong2017; Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019; Janwan et al., Reference Janwan, Rodpai, Intapan, Sanpool, Tourtip, Maleewong and Thanchomnang2020; de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024; Zhao et al., Reference Zhao, Mutombo, Mintsa-Nguema, Nkoghe, Atsame, Watts, Gordon and Bradbury2025d), and most recently, Papua New Guinea (PNG) (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c). S. f. kellyi appears restricted to New Guinea, where it has been associated with fatal protein-losing enteropathy in infants (Muller et al., Reference Muller, Lillywhite, Bending and Catford1987; Ashford et al., Reference Ashford, Barnish and Viney1992; Bradbury, Reference Bradbury2021). However, recent molecular analyses have challenged current assumptions regarding its taxonomy and distribution (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c). Two other species, Strongyloides procyonis (Little, Reference Little1966b) and Strongyloides ransomi (Kotlan and Vajda, Reference Kotlan and Vajda1934), have been shown to establish transient infections in humans under experimental conditions only and are therefore not considered further in this review.
In dogs, S. stercoralis is the only species known to establish natural infections. Its taxonomic relationship to the human-infecting S. stercoralis remains debated. Early experimental evidence suggested that human- and dog-derived S. stercoralis may represent distinct species, with the canine form historically referred to as ‘Strongyloides canis’ (Brumpt, Reference Brumpt1922; Augustine, Reference Augustine1940). This hypothesis has gained renewed interest following the identification of a dog-specific S. stercoralis genotype (cox1 lineage B) (Jaleta et al., Reference Jaleta, Zhou, Bemm, Schär, Khieu, Muth, Odermatt, Lok and Streit2017; Nagayasu et al., Reference Nagayasu, Aung, Hortiwakul, Hino, Tanaka, Higashiarakawa, Olia, Taniguchi, Win and Ohashi2017; Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019). Genomic analyses now indicate that dog and human S. stercoralis are genetically divergent but not completely reproductively isolated, with evidence of occasional introgression (de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024; Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025). Additionally, a cryptic Strongyloides genospecies has been reported in dogs from northern Australia (Beknazarova et al., Reference Beknazarova, Barratt, Bradbury, Lane, Whiley and Ross2019). Although S. f. fuelleborni (Sandground, Reference Sandground1925b) and Strongyloides procyonis (Little, Reference Little1966b) can infect dogs experimentally, these species have not been detected in natural canine infections.
Four species of Strongyloides have been reported in cats: Strongyloides felis (Chandler AC, Reference Chandler1925), Strongyloides planiceps (syn. Strongyloides cati) (Rogers, Reference Rogers1943), Strongyloides tumefaciens (Price and Dikmans, Reference Price and Dikmans1941) and S. stercoralis (Brown, Reference Brown1969). These species remain poorly studied. S. felis has been described in only a handful of studies, most published over 40 years ago (Chandler AC, Reference Chandler1925; Speare and Tinsley, Reference Speare and Tinsley1986, Reference Speare and Tinsley1987; Jitsamai, Reference Jitsamai2019). Identification of this species is challenging due its close morphological similarity to S. stercoralis (Speare, Reference Speare1986) and the lack of sequencing data for phylogenetic analysis (Zhao et al., Reference Zhao, Constantinoiu and Bradbury2025a). S. planiceps appears to infect primarily wild felids and canids, with sporadic cases in domestic cats (Rogers, Reference Rogers1939; Horie et al., Reference Horie, Noda, Noda and Higashino1981; Fukase et al., Reference Fukase, Chinone and Itagaki1983, Reference Fukase, Chinone and Itagaki1985; Sato et al., Reference Sato, Suzuki and Aoki2006; El-Seify et al., Reference El-Seify, Aggour, Sultan and Marey2017). S. tumefaciens is distinguished by producing characteristic colonic nodules in cats (Price and Dikmans, Reference Price and Dikmans1941). However, most feline surveys reporting S. stercoralis or S. tumefaciens have lacked definitive species confirmation (Zhao and Bradbury, Reference Zhao and Bradbury2024). The only molecularly confirmed case of S. stercoralis infection in cats exhibited colonic pathology atypical for this species but consistent with S. tumefaciens (Wulcan et al., Reference Wulcan, Dennis, Ketzis, Bevelock and Verocai2019), raising questions as to whether these taxa are synonymous or represent distinct species with overlapping pathology.
Morphology remains the principal taxonomic tool for defining species of Strongyloides. The morphological criteria established by early researchers, particularly Little (Reference Little1966a) and Speare (Reference Speare1986), have traditionally served as the gold standard for Strongyloides identification and diagnosis in medical and veterinary laboratories. Unfortunately, much of this foundational literature is now out of print and accessible only through inherited physical copies held by a small number of researchers. Although the rise of molecular diagnostics has shifted focus away from morphology-based identification (Bradbury et al., Reference Bradbury, Sapp, Potters, Mathison, Frean, Mewara, Sheorey, Tamarozzi, Couturier and Chiodini2022), morphology remains the cornerstone of parasite taxonomy and continues to be the most practical diagnostic tool in resource-limited settings, where the burden of infection is often highest (Buonfrate et al., Reference Buonfrate, Bisanzio, Giorli, Odermatt, Fürst, Greenaway, French, Reithinger, Gobbi, Montresor and Bisoffi2020). Efforts must be made to preserve and pass on morphological knowledge and expertise to future generations of parasitologists and diagnosticians.
Molecular genetics play an increasingly important role in nematode taxonomy (Thaenkham et al., Reference Thaenkham, Chaisiri and Chan2022). Phylogenetic and population genetic analyses allow the identification of cryptic diversity, clarify host specificity and resolve taxonomic ambiguities that morphology alone cannot address (González, Reference González2025). The integration of morphological and molecular datasets has recently enabled major taxonomic revisions in other helminth genera, including the reassignment of Mansonella perstans and Mansonella sp. ‘DEUX’ (Rodi et al., Reference Rodi, Gross, Sandri, Berner, Marcet-Houben, Kocak, Pogoda, Casadei, Köhler and Kreidenweiss2023), and the separation of Dirofilaria asiatica from D. repens (Colella et al., Reference Colella, Young, Manzanell, Atapattu, Sumanam, Huggins, Koehler and Gasser2025). In clinical diagnostics, DNA barcoding facilitates rapid and accurate detection and can be applied to complex samples unsuitable for traditional morphological analysis (González, Reference González2025).
Over recent decades, Strongyloides taxonomy has been increasingly informed by molecular genetic data. Two reviews have summarized advances in molecular genotyping (Bradbury et al., Reference Bradbury, Pafčo, Nosková and Hasegawa2021) and omics-based approaches (Al-Jawabreh et al., Reference Al-Jawabreh, Lastik, McKenzie, Reynolds, Suleiman, Mousley, Atkinson and Hunt2024b); however, both focused specifically on human-infecting species. Given the rapid expansion of sequence databases encompassing both human- and animal-infecting Strongyloides, a comprehensive synthesis across these host groups is now warranted to guide future taxonomic studies in medical and veterinary contexts.
Herein, we review decades of progress in the taxonomy of Strongyloides, with a focus on species infecting humans, dogs and cats. This focus reflects their primary medical and veterinary importance, their potential roles in zoonotic transmission and the recent expansion of molecular genetic data available for these hosts. Our aim is to provide a comprehensive and updated reference for parasitologists and diagnosticians by consolidating dispersed morphological and molecular evidence to support accurate species identification and inform future taxonomic studies. First, we provide an overview of these species, including their taxonomic history and host range. Second, we review morphological criteria applied to Strongyloides taxonomy and present detailed descriptions and comparative diagnostic features for genus identification and species differentiation. Third, we synthesize existing phylogenetic and population genetic evidence pertinent to the molecular taxonomy of Strongyloides.
Overview of Strongyloides species infecting humans, dogs and cats
Strongyloides stercoralis
Taxonomic history
In 1876, Louis Normand, a physician at the Naval Hospital in France, identified a small worm (∼0.25 mm in length) in the faeces of soldiers returning from Cochin-China (present-day Vietnam) with severe diarrhoea (Bavay, Reference Bavay1876). Bavay (Reference Bavay1876), his colleague, named it Anguillula stercoralis. During a subsequent autopsy of a soldier with similar symptoms, Normand discovered a larger worm (∼2 mm) in the small intestine, which Bavay (Reference Bavay1877) identified as a separate species, Anguillula intestinalis. Shortly thereafter, Bavay (Reference Bavay1877) observed larvae in cultured stools, mistakenly attributing them to A. intestinalis. These forms were later recognized as the rhabditiform larvae (from Greek rhabdos, ‘rod’, referring to the rod-like, 3-part oesophagus characteristic of the feeding larval stages), parasitic adults and filariform larvae (from Latin filum, ‘thread’, and forma, ‘shape’, referring to the elongated/cylindrical oesophagus) of a single species, now known as Strongyloides stercoralis (Grassi, Reference Grassi1879). The relationship between these stages was clarified by Grassi and Parona in 1878, who established the genus Strongyloides and named the parasite Strongyloides intestinalis (Grassi, Reference Grassi1879). In 1881, Perroncito cultivated free-living adults from larvae and referred to them as Pseudorhabditis stercoralis, a designation later corrected by Leuckart, who confirmed they belonged to the same species (Speare, Reference Speare1986). The nomenclature was ultimately resolved by Stiles and Hassall in 1902, who assigned the definitive name Strongyloides stercoralis (Stiles and Hassall, Reference Stiles and Hassall1902).
Host range
Since its original description in humans (Bavay, Reference Bavay1876), S. stercoralis has also been identified in dogs (Fulleborn, Reference Fulleborn1914), cats (Brown, Reference Brown1969) and NHPs (Penner, Reference Penner1981). The taxonomic status of dog-infecting S. stercoralis remains unresolved. Although human and canine strains of S. stercoralis are morphologically indistinguishable, early cross-infection experiments showed that human-derived strains did not consistently establish long-term infections in dogs and vice versa (Fulleborn, Reference Fulleborn1914; Fülleborn, Reference Fülleborn1927; Sandground, Reference Sandground1928; Augustine and Davey, Reference Augustine and Davey1939; Galliard, Reference Galliard1939, Reference Galliard1951; Sandosham, Reference Sandosham1952; Grove and Northern, Reference Grove and Northern1982). More recently, population genetic/genomic studies have supported the existence of a dog-specific lineage (cox1 lineage B), along with a separate lineage shared among humans, dogs, cats and NHPs (cox1 lineage A) (Jaleta et al., Reference Jaleta, Zhou, Bemm, Schär, Khieu, Muth, Odermatt, Lok and Streit2017; Nagayasu et al., Reference Nagayasu, Aung, Hortiwakul, Hino, Tanaka, Higashiarakawa, Olia, Taniguchi, Win and Ohashi2017; Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019; Bradbury et al., Reference Bradbury, Pafčo, Nosková and Hasegawa2021). It has been proposed that human-infecting S. stercoralis likely originated in wild canids and adapted to humans following the domestication of dogs (Nagayasu et al., Reference Nagayasu, Aung, Hortiwakul, Hino, Tanaka, Higashiarakawa, Olia, Taniguchi, Win and Ohashi2017; Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025). Evidence of occasional introgression between the human and canine lineages suggests they are not fully reproductively isolated (de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024; Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025).
The occurrence of S. stercoralis in cats remains somewhat enigmatic. Historically, S. stercoralis was not considered a natural parasite of felines, as early experimental infections of cats using human- or dog-derived isolates either failed to establish or resulted in only transient patency (Tuira, Reference Tuira1919; Sandground, Reference Sandground1925b; Reference Sandground1926a,Reference Sandgroundb, Reference Sandground1928; Augustine and Davey, Reference Augustine and Davey1939; Kadhim, Reference Kadhim1968). Although numerous reports have described S. stercoralis infection in cats, few included species-level confirmation (Zhao and Bradbury, Reference Zhao and Bradbury2024). The first unequivocal identification was reported by Wulcan et al. (Reference Wulcan, Dennis, Ketzis, Bevelock and Verocai2019), in which phylogenetic analysis of a 522 bp cox1 fragment placed the isolate within the human-dog-shared lineage of S. stercoralis.
In 1935, Mirza and Narayan isolated an S. stercoralis-like parasite from the intestine of an Arctic fox (Vulpex alopex) (Mirza and Narayan, Reference Mirza and Narayan1935). Morphometric analysis showed that the parasite had a shorter tail (∼40 µm) but was otherwise indistinguishable from S. stercoralis in humans. Based on this, they proposed it as a variety of S. stercoralis, naming it S. stercoralis var. vulpi (Mirza and Narayan, Reference Mirza and Narayan1935). This parasite has not been reported in foxes since, and it remains unclear whether foxes are true natural hosts. A separate species, Strongyloides vulpis, was described from red foxes (Vulpes vulpes) by Petrov in 1940 (Speare, Reference Speare1986), but original descriptions are now inaccessible. As a result, the taxonomic validity of both S. stercoralis var. vulpi and S. vulpis remains unresolved.
Strongyloides fuelleborni fuelleborni
Taxonomic history
In 1905, von Linstow O (Reference von Linstow1905) proposed the name Strongyloides fuelleborni for a species identified in chimpanzees (Pan troglodytes) and yellow baboons (Papio cynocephalus) in Africa. In his original description, he reported that this species characteristically shed larvae rather than eggs in faeces; however, it was later clarified that he had intended the opposite. Chandler AC (Reference Chandler1925) regarded S. fuelleborni as a variant of Strongyloides papillosus (Wedl, Reference Wedl1856) Ransom, 1911, whereas Sandground (Reference Sandground1925b) and Goodey (Reference Goodey1926) considered it a distinct species based on the morphology of the free-living female, particularly the prominent vulvar lips and the narrowing of the body immediately posterior to the vulva.
In 1923, Hung and Höppli (Reference Hung and Höppli1923) described Strongyloides simiae from Asian macaques (Macaca sp.), distinguishing it from S. fuelleborni and S. cebus by the presence of cuticular striations in parasitic females. However, subsequent studies revealed that transverse cuticular striations are common across all Strongyloides species, rendering these morphological differences insufficient to support S. simiae as a separate species. Consequently, S. simiae is regarded as a junior synonym of S. fuelleborni (Speare, Reference Speare1986).
The discovery and subsequent investigations of a S. fuelleborni-like species in PNG led to a taxonomic revision of S. fuelleborni. The New Guinea parasite was designated S. fuelleborni kellyi in 1991, while the original African species described by von Linstow has since became S. fuelleborni fuelleborni (Viney et al., Reference Viney, Ashford and Barnish1991). However, this subspecific distinction has recently been challenged by molecular data showing that S. f. kellyi shares genotypes with the Asian clade of S. f. fuelleborni, suggesting they are taxonomically identical (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c). While these findings point to a synonymy between S. f. kellyi and Asian S. f. fuelleborni, further morphological and genomic comparisons of isolates from Asia, Africa and the Pacific are needed before any formal taxonomic conclusions can be drawn (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c).
Host range
Humans and NHPs are the only confirmed natural hosts of S. f. fuelleborni (Speare, Reference Speare1986). Experimental infections with S. f. fuelleborni have been attempted in dogs (Canis lupus familiaris), cats (Felis catus), brown rats (Rattus norvegicus), house mice (Mus musculus) and guinea pigs (Cavia porcellus), but only dogs developed patent infections, which were short-lived and self-limiting (Sandground, Reference Sandground1925b; Rego, Reference Rego1972).
Strongyloides fuelleborni kellyi
Taxonomic history
During a 1971 parasitological survey in Kiunga, PNG, Allen Kelly detected Strongyloides eggs in human stool samples (Kelly and Voge, Reference Kelly and Voge1973). In some children, this infection was associated with a severe protein-losing enteropathy known as swollen bell syndrome (SBS). This condition was characterized by the presence of large numbers of Strongyloides eggs in stool, often in long mucous strings. In other children, eggs were passed individually, and there were no apparent signs of disease, despite high worm burdens. As it was assumed that only a single egg-producing Strongyloides sp. infected humans in PNG, an unknown co-factor was proposed to explain the development of SBS in some infants with heavy infections but not in others (Ashford et al., Reference Ashford, Barnish and Viney1992).
Subsequent morphological analysis of adult Strongyloides from PNG children revealed a close resemblance to S. fuelleborni von Linstow, 1905. However, the absence of NHPs on the island of New Guinea, combined with the paucity of reported S. fuelleborni infections in humans from regions between Africa and New Guinea at the time, left the identity of this S. fuelleborni-like nematode (S. cf. fuelleborni) unresolved (Viney et al., Reference Viney, Ashford and Barnish1991; Ashford et al., Reference Ashford, Barnish and Viney1992).
Using scanning electron microscopy, Viney et al. (Reference Viney, Ashford and Barnish1991) observed subtle morphological differences between S. fuelleborni isolated from African NHPs and S. cf. fuelleborni from PNG humans, specifically in the peri-vulval cuticle of parasitic females and the position of the phasmidial pore in free-living males. A parallel isoenzyme electrophoretic analysis showed that most S. cf. fuelleborni isolates (22/26) grouped with African S. fuelleborni; however, 4 isolates unexpectedly clustered with S. ransomi from local pigs (Viney and Ashford, Reference Viney and Ashford1990). The authors speculated that this may have resulted from participants submitting pig faeces in place of their own (Viney and Ashford, Reference Viney and Ashford1990). Notably, the Asian clade of S. fuelleborni was not included in these analyses (Viney and Ashford, Reference Viney and Ashford1990; Viney et al., Reference Viney, Ashford and Barnish1991). Nevertheless, based on the available data, Viney et al. (Reference Viney, Ashford and Barnish1991) designated S. cf. fuelleborni as a subspecies of S. fuelleborni, naming it S. f. kellyi in honour of its discoverer, Allen Kelly.
This taxonomic designation was later challenged by Dorris et al. (Reference Dorris, Viney and Blaxter2002), who conducted phylogenetic analysis of a 330 bp region of 18S rRNA and found that S. f. kellyi clustered more closely with S. venezuelensis and S. ransomi than with S. f. fuelleborni, prompting calls to elevate it to species status. However, these findings have been criticized due to the use of formalin-fixed specimens, which are prone to DNA degradation and sequencing artefacts, particularly given the limitations of early molecular techniques (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c). A subsequent genotyping study based on the 18S rRNA hypervariable regions HVR-I (432 bp) and HVR-IV (252-259 bp) similarly identified 1 PNG human isolate (1/8) clustering with S. venezuelensis and S. ransomi, distinct from S. f. fuelleborni (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c). However, the majority of PNG isolates (7/8) grouped within the Asian clade of S. f. fuelleborni (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c). The authors postulated the existence of 2 genetically distinct Strongyloides nematodes in PNG: S. f. kellyi which is likely synonymous with the Asian-Pacific clade of S. f. fuelleborni, and a second, undescribed species corresponding to the genospecies identified by Dorris et al. (Reference Dorris, Viney and Blaxter2002), closely related to S. ransomi of pigs. Notably, S. ransomi causes a protein-losing enteropathy in piglets similar to SBS (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c), and this second egg-producing Strongyloides sp. infecting infants in PNG may explain the previously confusing epidemiology of SBS in that nation.
Host range
Humans are the only known hosts of S. f. kellyi in New Guinea. Prior to the molecular era, investigations into potential zoonotic reservoirs, including pigs, chickens and dogs, found no evidence of infection in these animals (Viney et al., Reference Viney, Ashford and Barnish1991). Given recent taxonomic insights suggesting that S. f. kellyi is likely synonymous with the Asian-Pacific clade of S. f. fuelleborni (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c), such findings are not unexpected. Ashford et al. (Reference Ashford, Barnish and Viney1992) proposed that S. fuelleborni has adapted to exclusive human-to-human transmission in New Guinea without an NHP reservoir, a hypothesis supported by experimental and epidemiological findings from Africa (Pampiglione and Ricciardi, Reference Pampiglione and Ricciardi1972a; Hira and Patel, Reference Hira and Patel1980). However, whether humans are the only natural reservoir in New Guinea remains to be confirmed. This question is particularly relevant given reports of invasive NHP species in parts of the Pacific, including New Guinea (Kemp and Carter, Reference Kemp and Carter2022), which could act as mobile zoonotic reservoirs if they come into contact with humans.
The novel, undescribed genospecies identified by Zhao et al., (Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c) and Dorris et al. (Reference Dorris, Viney and Blaxter2002) may have a zoonotic reservoir in local animals, particularly pigs, given its close genetic relationship to the porcine parasite S. ransomi and the relative ubiquity of domestic pigs in PNG. Future investigations into this nematode in both humans and potential animal reservoirs in New Guinea should employ molecular or advanced morphological tools capable of differentiating Strongyloides spp.
Strongyloides felis
Taxonomic history
Strongyloides felis was first described by Chandler AC (Reference Chandler1925) in cats from Kolkata, India. Chandler AC (Reference Chandler1925) suspected that S. felis might be a variety or subspecies of S. stercoralis, tentatively naming it S. stercoralis var. felis. This subspecies was later elevated to specific status by Goodey (Reference Goodey1926).
Host range
Domestic cats (Felis catus) are the only confirmed natural host of S. felis (Speare, Reference Speare1986). The species has been reported in cats from India (Chandler AC, Reference Chandler1925), Australia (Speare and Tinsley, Reference Speare and Tinsley1986, Reference Speare and Tinsley1987) and Thailand (Jitsamai, Reference Jitsamai2019). However, in the Thai case, the morphological identification was questionable, as it described a hexagonal stoma in the free-living female, a diagnostic feature characteristic of the parasitic female (Speare, Reference Speare1986). Experimental infections of humans (Homo sapiens) and pigs (Sus scrofa) with S. felis did not result in patent infections (Speare, Reference Speare1986).
Strongyloides tumefaciens
Taxonomic history
In 1927, during the necropsy of a cat from Louisiana, United States (US), Price and Dikmans (Reference Price and Dikmans1941) observed several tumour-like lesions in the large intestine. A similar case was reported in Florida 3 years later, with nodular masses also found in the colon of another cat. Microscopic examination in both cases revealed small nematodes embedded within the nodules, with no parasites detected elsewhere in the intestine. Recovery of intact specimens was hindered by the brittleness of formalin-fixed tissues; however, measurements from 2 incomplete worms indicated an estimated body length of 5000 µm, substantially larger than that of any known Strongyloides sp. in cats at the time (2370–3330 µm). Based on the relatively large size of the parasitic female and the presence of characteristic nodular colonic lesions, Price and Dikmans (Reference Price and Dikmans1941) designated a new species, Strongyloides tumefaciens. No additional morphological descriptions of S. tumefaciens have since been published.
In 2019, Wulcan et al. (Reference Wulcan, Dennis, Ketzis, Bevelock and Verocai2019) reported similar nodular lesions in the colonic wall of Strongyloides-infected domestic cats from the Caribbean Island of St. Kitts. Worms recovered from these lesions were molecularly identified as S. stercoralis based on a 522 bp fragment of cox1. This finding prompted the authors to question the taxonomic validity of S. tumefaciens (Wulcan et al., Reference Wulcan, Dennis, Ketzis, Bevelock and Verocai2019). However, in the absence of additional molecular or morphological analyses of either S. tumefaciens or S. stercoralis in feline hosts, the taxonomic status of S. tumefaciens remains unresolved.
Host range
Since its initial discovery, S. tumefaciens has been reported in domestic cats from the US (Malone et al., Reference Malone, Butterfield, Williams, Stuart and Travasos1977; Lindsay et al., Reference Lindsay, Blagburn, Stuart and Gosser1987) and Brazil (Moura et al., Reference Moura, Jorge, Nascimento, Riet-Correa, Abel, Cavalcante, Oliveira and Bezerra2016), as well as in wild cats (Felis chaus) from India (Dubey and Pande, Reference Dubey and Pande1964). All of these reports relied on colonic pathology for species identification, a criterion later questioned by Wulcan et al. (Reference Wulcan, Dennis, Ketzis, Bevelock and Verocai2019).
Strongyloides planiceps
Taxonomic history
Strongyloides planiceps was first identified by R.T. Leiper in rusty-spotted cats (Prionailurus planiceps) from Malaysia in 1927 (Rogers, Reference Rogers1939). Rogers (Reference Rogers1939) described this species and initially named it Strongyloides cati. However, he later recognized that the name S. cati had already been used by Brumpt (Reference Brumpt1936) to describe a Strongyloides sp., now known as S. felis, from domestic cats in India. As Brumpt (Reference Brumpt1936)’s designation lacked a formal description, it was treated as a nomen nudum and held no official taxonomic standing. Nonetheless, to avoid confusion, Rogers (Reference Rogers1943) renamed the species S. planiceps. Although S. cati (Rogers, Reference Rogers1939) remains the technically valid name under the rules of nomenclature, S. planiceps has become the widely accepted name in the scientific literature (Speare, Reference Speare1986).
Host range
Natural infections with S. planiceps have been reported in raccoon dogs (Nyctereutes procyonoides) (Horie et al., Reference Horie, Noda, Noda and Higashino1981; Fukase et al., Reference Fukase, Chinone and Itagaki1985; Sato et al., Reference Sato, Suzuki and Aoki2006), Japanese weasels (Mustela itatsi) (Fukase et al., Reference Fukase, Chinone and Itagaki1985), red foxes (Vulpes vulpes schrencki) (Miyamoto and Inaoka, Reference Miyamoto and Inaoka1982), Japanese red foxes (Vulpes vulpes japonica) (Horie et al., Reference Horie, Ohnishi and Kobayashi1989) and domestic cats (Horie et al., Reference Horie, Noda, Noda and Higashino1981; Fukase et al., Reference Fukase, Chinone and Itagaki1983), most exclusively from Japan.
Natural infection in domestic dogs (Canis lupus familiaris) was suggested in 3 studies (Arizono, Reference Arizono1976; Horie et al., Reference Horie, Noda, Noda and Onishi1980; Fukase et al., Reference Fukase, Chinone, Itagaki, Aihara, Ohkuma, Shimamura and Shibuya1984). Arizono (Reference Arizono1976) described a strain of S. planiceps isolated from a dog in Kyoto, Japan, and maintained through serial passage in puppies; however, details of the original infection were not provided. Horie et al. (Reference Horie, Noda, Noda and Onishi1980) experimentally infected cats with a Strongyloides sp. isolated from dogs and later detected larvated eggs in feline faeces, leading the authors to suspect the parasite was S. planiceps. The pre-inoculation infection status of the cats, however, was not assessed, leaving open the possibility of prior infection. Similarly, Fukase et al. (Reference Fukase, Chinone, Itagaki, Aihara, Ohkuma, Shimamura and Shibuya1984) recovered Strongyloides larvae from canine faeces and experimentally infected both dogs and cats. Larvated eggs were detected in the faeces of both hosts, and adult parasitic females recovered from the small intestine were morphologically identified as S. planiceps. Although this study strongly suggests that dogs can serve as suitable hosts, the identification was based on experimentally infected animals rather than naturally infected dogs. Therefore, the status of dogs as natural hosts of S. planiceps remains circumstantial and requires further confirmation.
Patent experimental infections of cats and dogs with S. planiceps derived from wild carnivores have been documented (Horie et al., Reference Horie, Noda, Noda and Higashino1981; Fukase et al., Reference Fukase, Chinone and Itagaki1985). In the study by Horie et al. (Reference Horie, Noda, Noda and Higashino1981), patency lasted from 0.9 to 3.6 years in cats and from 26 days to over 1 year in dogs. Fukase et al. (Reference Fukase, Chinone and Itagaki1985) did not report the duration of patency in experimentally infected cats.
Morphology-based taxonomy of Strongyloides
Development of morphological criteria
Efforts to establish morphological criteria for the taxonomy of Strongyloides spp. began in the early 20th century. Sandground (Reference Sandground1925b) reviewed traits commonly used by early taxonomists to define new Strongyloides spp. and identified 2 reliable differentiating features: the stage passed in faeces and the ovary shape of the parasitic female. Chandler AC (Reference Chandler1925) reclassified Strongyloides spp. into 2 groups, one represented by S. stercoralis and the other by S. papillosus. This framework was later criticized for being incomplete and overlapping (Desportes, Reference Desportes1944; Basir, Reference Basir1950). A more comprehensive system was proposed by Little (Reference Little1966a). He suggested that the ovary type and stomal shape of parasitic females, and the stage of progeny shed in faeces were the most important features for Strongyloides speciation. Using these criteria, Little characterized 6 established and 7 new Strongyloides spp. (Little, Reference Little1966a, Reference Littleb). However, he also acknowledged that these features alone might be insufficient to distinguish closely related species, such as the primate parasites S. fuelleborni and S. cebus (Little, Reference Little1966a).
Building upon Little (Reference Little1966a)’s work, Speare (Reference Speare1986) refined Strongyloides taxonomy by incorporating additional distinguishing features across multiple life stages. These included post-vulval constriction and posterior vulval rotation in free-living females, as well as spicule morphology and peri-cloacal papillae arrangement in free-living males (Speare, Reference Speare1986). These characteristics, along with those previously identified by Little (Reference Little1966a) for parasitic females, were considered major morphological criteria for species delineation (Speare, Reference Speare1986). Speare (Reference Speare1986) also proposed several minor traits, including body dimensions, host range and the presence of an autoinfective cycle, as supplementary identifiers. Together, these criteria form the basis of Strongyloides morphological taxonomy and remain widely used today in both research and clinical settings.
Identification of the genus
Parasitic female
Parasitic females are slender and serpentine, measuring 1.5–10 mm in length and 27–95 µm in maximum width. The body is cylindrical, tapering slightly at the anterior end and abruptly at the tail. The thin body wall is covered by a finely striated cuticle. Tail is short and cone shaped. The head has a circumoral elevation but lacks lips, with a shallow, bilaterally symmetrical stoma. Cephalic papillae are indistinct, and amphids are positioned laterally. A single dome-shaped cervical papilla is present at the excretory pore level. The nerve ring crosses the oesophagus in the anterior quarter. The oesophagus is cylindrical, with a muscular anterior portion and a posterior part composed of 3 glandular nuclei (1 dorsal, 2 subventral). The intestine consists of 40 cells, each with a single nucleus, in 2 rows leading to a short rectum. The excretory system opens just posterior to the nerve ring. The reproductive system is didelphic, with equal, opposed uteri and reflexed ovaries, but lacks seminal receptacles. The vulva, situated approximately two-thirds of the body length from the anterior end, is a transverse slit with distinct margins. Eggs are arranged in a single row within the uterus. Paired nerve endings are present near the vulva, where the cuticle dorsal to the vulva is modified at its junction with the hypodermis (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996; Castelletto et al., Reference Castelletto, Akimori, Patel, Schroeder and Hallem2024).
Strongyloides spp. can be readily distinguished morphologically from other nematodes that may occur in the intestines of humans and animals by having only the parasitic female stage. Unlike most parasitic nematodes, Strongyloides spp. lack parasitic males, despite early reports suggesting otherwise (Faust EC, Reference Faust1933). Parasitic females typically reside within the mucosal layer of the small intestine but may also be found freely in the intestinal lumen, particularly in cases of severe pathological reaction (Page et al., Reference Page, Judd and Bradbury2018). In humans and dogs, hyperinfection with S. stercoralis can lead to disseminated strongyloidiasis, where parasitic females have been identified in the mucosa of small bronchi and bronchioles (Higenbottam and Heard, Reference Higenbottam and Heard1976). In such severe cases, both parasitic females and eggs may be recovered from sputum and faeces (Bisoffi et al., Reference Bisoffi, Buonfrate, Montresor, Requena-Mendez, Munoz, Krolewiecki, Gotuzzo, Mena, Chiodini and Anselmi2013; Mati et al., Reference Mati, Raso and de Melo2014).
Free-living female
Free-living females are comparatively smaller (up to 1.5 mm in length) but broader (up to 85 µm at their widest point). They have a spindle-shaped body with a marked central enlargement to accommodate the egg-filled uterus, which occupies most of the body cavity. The head bears 2 lateral cephalic lobes, each containing small, inconspicuous papillae in subdorsal, lateral and subventral positions. Amphids are located posterior to the lateral papillae. The mouth is dorso-ventrally elongated, with a laterally compressed subglobular stoma bordered anteriorly by a collar-like cuticular structure. The rhabditoid oesophagus consists of a muscular corpus subdivided into anterior and posterior portions, a narrow isthmus and a terminal bulb with a well-developed valvular apparatus. The nerve ring encircles the oesophagus at the posterior end of the isthmus. The intestine comprises 22 cells arranged in dorsal and ventral rows. A short rectum leads to a subterminal anus, which has a slight lip-like swelling along its posterior edge. Phasmids are located laterally near the midpoint of the gradually tapering, finely pointed tail. The reproductive system is didelphic, with equal and opposed uteri and reflexed ovaries; the anterior branch runs along the right side of the intestine, and the posterior branch along the left. The vulva is positioned near mid-body and is associated with a short vagina; the terminal portion of the uterus serves as a seminal receptacle (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996; Castelletto et al., Reference Castelletto, Akimori, Patel, Schroeder and Hallem2024).
Free-living Strongyloides females must be carefully distinguished from free-living rhabditoid nematodes commonly found in soil, which can contaminate faecal cultures, particularly when samples are collected from bare ground. Strongyloides free-living females possess 2 broad lateral lips bearing 6 small papillae, whereas free-living rhabditoid nematodes typically have 4–6 lips with more prominent papillae. The buccal capsule in rhabditoids is longer and cylindrical with parallel sides, in contrast to the shorter and more compact buccal structure of Strongyloides. The oesophagus in Strongyloides is clearly divided into 4 regions, while in Rhabditis, the anterior muscular region is often reduced or absent, and the posterior corpus commonly expands into a muscular bulb, producing a characteristic mid-bulb morphology. Tail morphology also provides a useful differentiator; most free-living rhabditoid nematodes have a long, slender and whip-like tail, whereas the tail of Strongyloides is finely tapered and relatively short, typically not exceeding 15% of the total body length (Sandground, Reference Sandground1925a; Speare, Reference Speare1986; Grove, Reference Grove1996).
Free-living male
Free-living males are slightly smaller than females, measuring up to 1.2 mm in length and 55 µm at maximum width. The body wall, cuticle, head, oesophagus, intestine and excretory system are similar to those of the female. The reproductive system consists of a straight, tubular structure with an unreflexed testis extending from just posterior to the oesophagus to the mid-body. The seminal vesicle and vas deferens are poorly differentiated. The short cloaca houses a pair of equal, blade-like spicules with laterally bent, knob-like anterior ends and 2 supporting ribs that extend nearly to the tip. A thin membrane along the ventral edge gives the spicules a bow-like appearance. The gubernaculum is laterally compressed, with wing-like extensions forming a T-shaped posterior end in cross-section. The caudal papillae include a single unpaired papilla on the anterior cloacal lip and 6 bilaterally arranged papillae: 1 subventral preanal, 2 subventral adanal (anterior and posterior), 1 lateral postanal, 1 subventral postanal and 1 subdorsal postanal. The tail is shorter and broader than that of the female, ventrally curved when fixed and tapers abruptly to a point (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996; Castelletto et al., Reference Castelletto, Akimori, Patel, Schroeder and Hallem2024).
Several morphological features distinguish free-living Strongyloides males from rhabditoid males. In Strongyloides, the testis is broad, blunt-ended and unreflexed, whereas in rhabditoids, it is typically narrow and reflexed posteriorly. The spicules of rhabditoids are strongly curved, often appearing fused at the tip and lacking a ventral membrane. In contrast, Strongyloides spicules are less curved, possess a ventral membrane and are often extruded and diverge laterally in fixed specimens. The gubernaculum of Strongyloides includes a distinct medial plate separating the spicules, while in rhabditoids, the medial plate, if present, is typically small and does not extend between the spicules. Additionally, caudal alae are absent in Strongyloides but present in rhabditoids, where they typically bear 9 pairs of stalked papillae (Speare, Reference Speare1986; Grove, Reference Grove1996).
Egg
Eggs shed by parasitic and free-living females of Strongyloides are thin shelled and ellipsoid, with slightly flattened poles. They typically measure 40–55 µm in length, with a width ranging from one-half to three-quarters of the length. Each egg contains an underdeveloped rhabditiform larva at the time of passage (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996).
Careful differentiation is required in faecal samples to distinguish Strongyloides eggs from those of hookworms, Ternidens deminutus, Oesophagostomum spp. and trichostrongylids. Strongyloides eggs are generally smaller, have thinner shells and usually contain a developing larva rather than the 8- or 16-cell morula typical of these other species when freshly voided (Figure 1).
Exemplar eggs of selected intestinal nematodes, with size indicated in micrometres (µm).

Figure 1 Long description
The image shows five different intestinal nematode eggs, each labeled with its name and size indicated in micrometres on the y-axis. From left to right, the eggs are Strongyloides fuelleborni, Hookworm, Oesophagostomum spp., Ternidens deminutus and Trichostrongylus spp. The y-axis ranges from 0 to 100 micrometres, providing a scale for comparison of egg sizes. Each egg has distinct visual characteristics, with variations in texture and pattern visible within the shells.
Rhabditiform larva
Four rhabditiform stages of Strongyloides spp. (L1r-L4r) have been identified. They are differentiated primarily by the increasing size following each moult (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996; Castelletto et al., Reference Castelletto, Akimori, Patel, Schroeder and Hallem2024).
The first-stage rhabditiform larva (L1r) of Strongyloides spp. measures 180–240 µm in length and 14–15 µm in width, with a mean length around 210 µm. The oesophagus comprises nearly one-third of the body length and is structurally similar to that of the free-living adult. The head has 2 cephalic lobes separated by a transversely elongated, oval mouth. The cylindrical stoma is 5–8 µm long, with a slightly thickened posterior wall. The nerve ring is initially located near the anterior end but migrates to the posterior isthmus prior to the first moult. The intestine consists of 22 uninucleate cells arranged in dorsal and ventral rows. The rectum is short, with the anus located 40–60 µm from the tail tip. A prominent, rhomboid-shaped genital primordium, containing 5–9 nuclei, lies ventrally near the mid-intestine. Although larval length nearly doubles before the first moult (depending on culture conditions), the oesophagus grows only slightly. There are no detectable morphological differences between L1r larvae originating from eggs of parasitic versus free-living females (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996).
The L1r can be distinguished from other soil-transmitted nematodes by its shallow buccal cavity (4–8 µm), straight intestine and prominent lateral genital primordium. Hookworm larvae, in contrast, possess a smaller, more refractile genital primordium (<4 µm), while Ternidens spp. and Rhabditis spp. have longer tails and deeper buccal cavities (Schulte and Poinar, Reference Schulte and Poinar1991; Bradbury, Reference Bradbury2019; Buonfrate et al., Reference Buonfrate, Tamarozzi, Paradies, Watts, Bradbury and Bisoffi2022).
The second-stage rhabditiform larva (L2r) varies in morphology depending on whether development proceeds through the homogonic (direct) or heterogonic (indirect) life cycle. Larvae destined to become L3r (heterogonic development) undergo modest elongation and increased body width, measuring approximately 400 μm in length and 18–25 μm in width. In homogonic development, L2r transform into iL3 and exhibit more pronounced internal changes: the oesophagus elongates from 30% to 45% of body length, with the posterior portion becoming less muscular and more glandular, and oesophageal gland nuclei become more prominent. Intestinal cells (except the first and last pairs) divide, increasing the total from 22 to 40 nuclei. A notched tail of the emerging filariform larva forms within the cuticle in preparation for ecdysis. In both developmental pathways, the head is reorganized such that the cephalic lobes of the third-stage larva become lateral, in contrast to the dorsal and ventral positions observed in L1r and early L2r (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996).
The third-stage rhabditiform larva (L3r) typically measures 550–700 μm in length and 22–30 μm in width. The oesophagus remains rhabditiform, increasing slightly in length and complexity, while the intestinal lumen widens. The genital primordium continues to expand, showing preliminary gonadal development. Morphological sexual differentiation begins to appear in L3r and becomes increasingly apparent as larvae approach L4r. The cuticle thickens, and head and tail structures mature; however, this stage remains non-infective and restricted to environmental development (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996).
The fourth-stage rhabditiform larva (L4r) represents the final larval stage in the heterogonic cycle. These larvae typically measure 700–900 μm in length and 30–40 μm in width, with females slightly larger than males. The oesophagus adopts a structure resembling that of the free-living adult, including distinct corpus, isthmus and terminal bulb regions. Gonadal development progresses significantly: ovaries and testes are readily distinguishable and lie adjacent to the intestine. Though morphologically similar to free-living adults, L4r larvae are distinguishable by their smaller size and incomplete gonadal maturation. In females, the vulva is visible as a shallow, slit-like invagination but remains closed to the exterior (Castelletto et al., Reference Castelletto, Akimori, Patel, Schroeder and Hallem2024). This stage precedes the final moult into sexually mature free-living adults (Little, Reference Little1966a; Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996).
Infective third-stage larva
In the homogonic (direct) life cycle, some L2r bypass the free-living phase and develop directly into infective third-stage filariform larvae (iL3) (Grove, Reference Grove1996; Streit, Reference Streit2008; Viney and Lok, Reference Viney and Lok2015). The choice between homogonic and heterogonic development can be influenced by environmental factors such as temperature, humidity and host availability (Streit, Reference Streit2008, Reference Streit2017). In most Strongyloides spp., including S. stercoralis and S. felis, free-living development is limited to a single generation (Viney and Lok, Reference Viney and Lok2015). However, under optimal culture conditions, some species may undergo multiple successive free-living generations. Hansen et al. (Reference Hansen, Buecher and Cryan1969) reported 2–3 such generations in S. fuelleborni, comprising exclusively females that reproduced only in the presence of males from the first generation, while Premvati (Reference Premvati1958a) observed only 1 generation in the same species. S. planiceps has been observed to complete up to 9 consecutive free-living generations (Yamada et al., Reference Yamada, Matsuda, Nakazawa and Arizono1991). iL3 represent the infective stage responsible for initiating new parasitic infections (Grove, Reference Grove1996; Streit, Reference Streit2008; Viney and Lok, Reference Viney and Lok2015).
Strongyloides iL3 are slender and serpentine, measuring 400–700 µm in length and 12–20 µm in width. The cylindrical, filariform oesophagus constitutes approximately 40–45% of the total body length. The cuticle is finely striated, and the lateral alae are double, spaced about 4 µm apart, extending to the tail, where they form a distinctive notched tip. The head bears 2 inconspicuous lateral cephalic lobes with small subdorsal and subventral papillae, and a lateral amphid. The mouth is small and pore-like, with a shallow, laterally compressed stoma. The intestinal cells are arranged in dorsal and ventral rows, consisting of 40 nuclei, where the anterior and posterior pairs are uninucleate and the remainder binucleate. The excretory system resembles that of the free-living adult stages (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996; Castelletto et al., Reference Castelletto, Akimori, Patel, Schroeder and Hallem2024).
iL3 can be readily distinguished from other nematode larvae by their slender shape, elongated filariform oesophagus and, most notably, the notched tail tip, which is considered pathognomonic for the genus Strongyloides. No other nematodes exhibit this feature. Unlike hookworm iL3, Strongyloides iL3 are unsheathed, having shed the cuticle of the previous stage during ecdysis (Little, Reference Little1966a, Reference Fukase, Chinone and Itagakib; Speare, Reference Speare1986; Grove, Reference Grove1996).
Autoinfective larva
Strongyloides stercoralis and S. felis are the only Strongyloides species for which an autoinfective cycle has been documented (Speare, Reference Speare1986; Buonfrate et al., Reference Buonfrate, Bradbury, Watts and Bisoffi2023). The third-stage autoinfective filariform larvae (L3a) share overall morphology and structural proportions with iL3 but are generally shorter and stouter. Their body length rarely exceeds 500 µm, with a width-to-length ratio of approximately 1:4 (Schad et al., Reference Schad, Smith, Megyeri, Bhopale, Niamatali and Maze1993; Kim et al., Reference Kim, Joo, Ko, Na, Hwang and Im2005; Buonfrate et al., Reference Buonfrate, Tamarozzi, Paradies, Watts, Bradbury and Bisoffi2022, Reference Buonfrate, Bradbury, Watts and Bisoffi2023).
Recently, S. stercoralis larvae exhibiting morphological features intermediate between L3a and parasitic females were observed in respiratory tract specimens from 2 human cases in Australia (Zhao et al., Reference Zhao, Koehler, Truarn, Bradford, New, Speare, Gasser, Sheorey and Bradbury2025b). These were identified as fourth-stage autoinfective filariform larvae (L4a) and are distinguished from L3a by their cone-shaped tail and a more developed genital primordium. The oesophagus remains filariform and occupies 37–46% of body length, a proportion intermediate between that of L3a and parasitic females. The genital rudiment is notably enlarged and contains a developing vulva enclosed within cuticular layers (Zhao et al., Reference Zhao, Koehler, Truarn, Bradford, New, Speare, Gasser, Sheorey and Bradbury2025b). Similar ‘juvenile’ parasitic females of S. stercoralis had been previously described in experimentally infected dogs (Faust EC, Reference Faust1933) and marmosets (Mati et al., Reference Mati, Raso and de Melo2014), although Faust EC (Reference Faust1933)’s description may represent a mixture of parasitic and free-living forms (Zhao et al., Reference Zhao, Koehler, Truarn, Bradford, New, Gasser, Sheorey and Bradbury2025a). Detailed morphometric data for this stage remain unavailable.
Identification of the species
Of the stages described above, the morphology of the parasitic female, free-living female and free-living male is particularly informative for differentiating Strongyloides spp. The distinguishing morphological and morphometric characteristics of these stages in Strongyloides spp. infecting humans and companion animals are discussed in the following sections and summarized in Tables 1 and 2.
Comparative morphometrics of Strongyloides species infecting humans, dogs and cats

Table 1 Long description
The table compares morphometric data of various Strongyloides species infecting humans, dogs, and cats, focusing on egg size, larval stages, and adult forms. S. tumefaciens exhibits the largest parasitic female body length at 5000 micrometers, whereas S. felis has the smallest rhabditiform larvae body length ranging from 217 to 238 micrometers. Egg sizes vary significantly, with S. tumefaciens having the largest eggs at 114 to 124 micrometers by 62 to 68 micrometers. Notably, data for some species and measurements are missing, such as the rhabditiform larvae body width for S. felis. These variations highlight the diversity in size and morphology among the species, which may influence their biological and ecological roles.
nd, no data.
*At the widest point.
Distinguishing morphological features of Strongyloides species infecting humans, dogs and cats

Table 2 Long description
The table compares morphological features of Strongyloides species infecting humans, dogs, and cats, focusing on stages in fresh feces, stomal shape, circumoral lobes, ovary type, tail shape, and other characteristics. S. stercoralis and S. felis exhibit rhabditiform larvae, while others show larvated eggs. Stomal shapes vary from hexagonal in S. stercoralis to dumbbell-shaped in S. planiceps. Circumoral lobes range from 0 in S. f. fuelleborni to 6 in S. stercoralis and S. felis. Ovary types are either straight or spiral, with S. planiceps and S. f. fuelleborni showing spiral ovaries. Tail shapes are predominantly narrowly tapered or bluntly rounded. Notably, S. stercoralis and S. felis have autoinfective larvae, while S. tumefaciens parasitic females are found in the large intestine. These morphological differences are crucial for species identification and understanding their parasitic behavior.
L1, first-stage, rhabditiform larvae; NHP, non-human primate; nd, no data.
* Morphological features observed using scanning electron microscopy.
Parasitic female
Morphological features useful for species identification in the parasitic female include stomal shape (in en face view), the number and arrangement of lobes on the circumoral elevation, ovary configuration and tail morphology (Figures 2 and 3). Stomal shape can be categorized into 4 types: simple, angular, complex and those with oesophageal teeth (Speare, Reference Speare1986). A simple stoma lacks angularity and may appear round, oval or dumbbell-shaped. Angular stomas include square, rectangular, hexagonal or badge-like configurations. Complex stomas are partitioned into multiple chambers with radiating subdivisions extending from a central cavity. A stoma with oesophageal teeth has anterior projections arising from the oesophagus and extending to the stomal margin (Figure 2A). While identifying the exact stomal shape may be technically challenging, classification into one of these categories is typically achievable and alone permits differentiation of several Strongyloides species (Speare, Reference Speare1986; Sato et al., Reference Sato, Tanaka, Une, Torii, Yokoyama, Suzuki, Amimoto and Hasegawa2008).
Distinguishing morphological features of parasitic females of Strongyloides spp. (a) Stomal shape in en face view; (b) ovary type, based on its orientation relative to the intestine; (c) tail morphology in lateral view, highlighting the degree of tapering. Modified from Speare (Reference Speare1986). See Table 2 for species-specific morphological features.

Figure 2 Long description
The image shows three sections. The first section (a) illustrates various stomal shapes: round, dumbbell, dumbbell with oesophageal teeth, X-shaped, hexagonal and rectangular. The second section (b) depicts ovary types: straight and spiral. The third section (c) shows tail morphologies: bluntly rounded, narrowly tapered and narrowly tapered to a point.
Parasitic females of Strongyloides spp.: (a) Strongyloides stercoralis, (b) Strongyloides fuelleborni, (c) Strongyloides felis, (d) Strongyloides planiceps. Each panel shows the full body of the nematode. Insets highlight the stoma and tail regions, with the stoma shown in en face (EF), lateral (L) and dorsoventral (DV) views, and the tail in lateral view. Modified from Little (Reference Little1966a) and Speare (Reference Speare1986).

Figure 3 Long description
The image shows four panels labeled a, b, c and d, each depicting the full body of a parasitic female nematode. Insets highlight the stoma and tail regions. In panel a, the stoma is shown in en face, lateral and dorsoventral views. Panel b displays similar views with a different stoma shape. Panel c presents another stoma configuration in the same views. Panel d shows yet another stoma type, again in en face, lateral and dorsoventral views. Each nematode illustration includes a scale bar indicating 100 micrometers for the full body and 10 micrometers for the stoma views.
The circumoral elevation is often divided into paired lobes, with species-specific variation in the number. In lateral or dorsoventral views, lobes may be absent or present in groups of 2, 4, 6 or 8. Species with 2 lobes typically have broad lateral lobes; those with 4 include lateral, dorsal and ventral lobes. In 6-lobed species, lobes are positioned laterally, subventrally and subdorsally, while 8-lobed species also have distinct dorsal and ventral lobes (Little, Reference Little1966a, Reference Littleb; Arizono et al., Reference Arizono, Matsuo and Yoshida1976). The prominence of these lobes varies among species, making enumeration less reliable in some cases. Although theoretically useful for differentiation, lobulation is generally considered a minor criterion, used only when other distinguishing features fail to separate species (Speare, Reference Speare1986).
The didelphic ovary in parasitic females may be either straight (recurrent) or spiral. In spiral types, the ovaries follow the course of the intestine without encircling it. The anterior arm typically exhibits more pronounced spiralling than the posterior, and both arms maintain a consistent anatomical relationship with the intestine, spiralling uniformly in an anticlockwise direction from the anterior end (Figure 2B). Ovary type can aid taxonomic classification, but it is not a definitive diagnostic feature by itself. In species with spiral ovaries, females may reach sexual maturity before spiralling becomes morphologically apparent (Little, Reference Little1966a, Reference Littleb; Speare, Reference Speare1986; Grove, Reference Grove1996).
Tail morphology is another distinguishing feature among Strongyloides spp., with variation in the degree of taper and tip shape. Tails may range from narrowly tapered to bluntly rounded (Figure 2C). S. felis has a finely tapered, often pointed tail, whereas S. stercoralis typically has a less acutely tapered, blunt-ended tail (Speare, Reference Speare1986). Although not exclusively diagnostic, tail morphology can support preliminary species differentiation, particularly between S. felis and S. stercoralis in feline hosts, pending confirmation through more definitive features, such as stomal shape (Speare, Reference Speare1986).
Free-living female
The morphology of the free-living female Strongyloides spp. is largely conserved across species. Differentiation relies primarily on 2 peri-vulval features: post-vulval narrowing and vulval rotation. In some species, the body diameter remains relatively constant posterior to the vulva (Figure 4A), while in others, a reduction in diameter is observed (Figure 4B). S. fuelleborni and S. felis have pronounced post-vulval narrowing, whereas S. stercoralis shows a moderate reduction of approximately 15%. In species with less pronounced narrowing, the reduction is generally below 10% (Speare, Reference Speare1986; Grove, Reference Grove1996). A limitation of this trait is its environmental sensitivity; for instance, in S. fuelleborni, the degree of narrowing may vary with temperature (Premvati, Reference Premvati1958b).
Vulval morphology in free-living females of Strongyloides spp. (a) Absence of post-vulval body narrowing (S. stercoralis, S. planiceps); (b) presence of post-vulval body narrowing (S. fuelleborni, S. felis); (c) absence of posterior vulval rotation (the vulval slit forms an angle of 90°–100° with the longitudinal body axis) (S. stercoralis, S. planiceps); (d) presence of posterior vulval rotation (the vulval slit forms an angle greater than 100° with the longitudinal body axis) (S. fuelleborni, S. felis). Modified from Speare (Reference Speare1986).

Figure 4 Long description
The image shows four illustrations labeled a, b, c and d. Illustration a depicts the absence of post-vulval body narrowing. Illustration b shows the presence of post-vulval body narrowing. Illustration c illustrates the absence of posterior vulval rotation, with the vulval slit forming an angle of 90 to 100 degrees with the longitudinal body axis. Illustration d shows the presence of posterior vulval rotation, with the vulval slit forming an angle greater than 100 degrees with the longitudinal body axis.
By contrast, vulval rotation represents a more stable and taxonomically reliable feature. In most species, including S. stercoralis and S. planiceps, the vulval slit or short vagina forms an angle of 90°–100° with the longitudinal body axis (Figure 4C). However, in S. fuelleborni and S. felis, this angle exceeds 100°, producing a distinctly posteriorly rotated vulval appearance (Figure 4D). Unlike post-vulval narrowing, vulval rotation appears unaffected by environmental conditions and is considered a reliable criterion for species differentiation (Speare, Reference Speare1986).
Free-living male
Taxonomically important features in the free-living male include spicule morphology, gubernaculum structure and the arrangement of caudal papillae. Most Strongyloides spp. possess sharply pointed spicule tips, though some species have blunted, hooked or laterally projected tips. Spicule curvature varies from straight to markedly curved; however, this trait has limited diagnostic value due to measurement variability and observer subjectivity (Speare, Reference Speare1986). A more consistent taxonomic character is the shape of the spicule’s ventral membrane, which may appear convex, straight or concave (Figure 5A). Most species have a straight membrane, but its prominence varies, being more pronounced in S. fuelleborni compared to S. stercoralis (Speare, Reference Speare1986; Grove, Reference Grove1996).
Distinguishing morphological features of free-living males of Strongyloides spp. (a) Spicule morphology, showing the shape of the ventral membrane; (b) tail showing the arrangement of caudal papillae, including (1) subventral preanal papilla, (2) anterior adanal papilla, (3) posterior adanal papilla, (4) lateral papilla, (5) subventral postanal papilla and (6) subdorsal postanal papilla. The subventral preanal papilla is aligned with the 2 adanal papillae in the left diagram but not in the right, as indicated by the red dashed line. The arrow indicates the preanal organ. Modified from Speare (Reference Speare1986). See Table 2 for species-specific morphological features.

Figure 5 Long description
The image A shows three illustrations of spicule morphology labeled as straight, convex and concave. The image B shows two diagrams of tail structures with numbered caudal papillae: (1) subventral preanal papilla, (2) anterior adanal papilla, (3) posterior adanal papilla, (4) lateral papilla, (5) subventral postanal papilla and (6) subdorsal postanal papilla. The left diagram shows alignment of the subventral preanal papilla with the adanal papillae, while the right diagram shows a different arrangement, indicated by a dashed line and an arrow pointing to the preanal organ.
The gubernaculum is relatively conserved across Strongyloides spp., except in S. serpentis, which displays a uniquely straight dorsal border. Minor differences in the dorsal pole and width-to-length ratio are observed among species but are not sufficient for definitive identification (Speare, Reference Speare1986).
The arrangement of caudal papillae is among the most reliable taxonomic markers (Speare, Reference Speare1986). Key distinguishing features include the position of the subventral preanal papilla relative to the preanal organ and the longitudinal alignment of the subventral preanal and adanal papillae (Speare, Reference Speare1986). For instance, in S. stercoralis, the subventral preanal papilla is aligned with both adanal papillae, whereas in S. fuelleborni, the anterior adanal papilla is dorsally displaced (Figure 5B). Additionally, S. stercoralis has a more anteriorly located preanal organ relative to the cloacal opening, in contrast to its more posterior placement in S. fuelleborni (Speare, Reference Speare1986).
The position of the phasmidial pore in the free-living male is particularly informative in distinguishing subspecies of S. fuelleborni. In S. f. kellyi, the phasmidial pore lies midway between the 2 post-cloacal papillae, while in S. f. fuelleborni, it is situated adjacent to the anterior-most cloacal papilla (Viney et al., Reference Viney, Ashford and Barnish1991). Owing to their minute size, phasmidial pores require visualization using scanning electron microscopy.
Other distinguishing features
The developmental stage present in freshly voided faeces can assist in preliminary species identification. While all Strongyloides spp. are oviparous, hatching may occur internally, resulting in the passage of L1r in faeces, as observed in S. stercoralis and S. felis, or externally, with eggs passed in faeces and hatching occurring in the environment, as seen in S. fuelleborni and S. planiceps. Some other animal-infecting Strongyloides spp., such as S. ratti, may shed both eggs and L1r in faeces (Speare, Reference Speare1986; Viney and Lok, Reference Viney and Lok2015).
However, faecal stages alone are unreliable for definitive species identification, particularly when examination is delayed. For example, eggs of S. f. fuelleborni may hatch into L1r within 6–10 h at 23–25 °C and within 2–7 h at 37 °C (Cordi and Otto, Reference Cordi and Otto1934). Infection intensity may also influence which stage is excreted. Although rare, eggs of S. stercoralis have been documented in freshly voided faeces during hyperinfection (Bisoffi et al., Reference Bisoffi, Buonfrate, Montresor, Requena-Mendez, Munoz, Krolewiecki, Gotuzzo, Mena, Chiodini and Anselmi2013; Mati et al., Reference Mati, Raso and de Melo2014).
The detection of Strongyloides L1r, parasitic females or eggs in respiratory or urinary tract specimens is indicative of disseminated S. stercoralis infection (Buonfrate et al., Reference Buonfrate, Tamarozzi, Paradies, Watts, Bradbury and Bisoffi2022). S. stercoralis is currently the only species known to cause dissemination in natural infections (Buonfrate et al., Reference Buonfrate, Bradbury, Watts and Bisoffi2023).
Challenges in morphology-based taxonomy
Reliance on morphology-based taxonomic tools to identify and differentiate Strongyloides spp. presents several challenges. Firstly, accurate identification requires experienced morphologists capable of recognizing subtle diagnostic characters, a skill set that is becoming increasingly scarce as formal training in parasitological morphology declines (Bradbury et al., Reference Bradbury, Sapp, Potters, Mathison, Frean, Mewara, Sheorey, Tamarozzi, Couturier and Chiodini2022). For example, distinguishing the 2 larvae-shedding species, S. stercoralis and S. felis, requires detailed assessment of minute differences in stomal and tail morphology in parasitic females and vulval configuration in free-living females (Speare, Reference Speare1986).
Secondly, the life cycle stages most informative for speciation, parasitic females and free-living adult males and females, are difficult to obtain. Parasitic females can be recovered from animals by necropsy or intestinal biopsy but are rarely accessible from humans. Recovery from faeces is occasionally possible following anthelmintic treatment; however, these worms are dead and often show degenerate morphological changes that limit reliable identification (Speare, Reference Speare1986). Speare (Reference Speare1986) noted postmortem pigment accumulation and ovarian vacuolation in parasitic females, which can obscure determination of ovary type, a key taxonomic character. Free-living adults are facultative and require prolonged culture (≥5 days) to obtain (Buonfrate et al., Reference Buonfrate, Tamarozzi, Paradies, Watts, Bradbury and Bisoffi2022). Morphology of free-living females can be influenced by culture temperature: S. fuelleborni has been reported to show markedly reduced post-vulval narrowing when cultured above 30 °C or below 25 °C (Premvati, Reference Premvati1958b), although this was not observed in S. felis (Speare, Reference Speare1986). Easily recoverable faecal stages (e.g. eggs or L1r) are morphologically uniform across Strongyloides spp., limiting their taxonomic utility (Speare, Reference Speare1986).
Thirdly, although morphometrics can help distinguish Strongyloides from other nematodes, they are of limited value for differentiating species within the genus (Table 1). Specimen measurements may be influenced by artefacts introduced during processing prior to microscopic examination. For example, compression under coverslips can flatten cylindrical worms, artificially increasing width, whereas chemical fixation may cause shrinkage or alter proportions (Speare, Reference Speare1986). Speare (Reference Speare1986) found that preservation in 70% ethanol for 48 h reduced the length of Strongyloides parasitic females by approximately 15% and iL3 by 13.5%, while 10% formalin caused comparatively less shrinkage (7.5% for iL3).
Finally, while established morphological criteria allow for the differentiation of many Strongyloides spp., they do not reliably distinguish closely related species or resolve interspecific relationships. Chandler AC (Reference Chandler1925) proposed the earliest framework for grouping Strongyloides spp., though he erroneously assigned several species at the subspecific level. His classification divided species into 2 groups: the S. stercoralis group and the S. papillosus group. The S. stercoralis group is characterized by parasitic females with straight ovaries, a simple stoma, a narrowly tapered tail and the shedding of L1r in faeces. Free-living males in this group possess pointed spicules and have the subventral preanal and adanal papillae aligned longitudinally. Members include S. stercoralis, S. felis and S. procyonis. In contrast, the S. papillosus group includes species with parasitic females that have spiralled ovaries, a complex stoma and shed eggs in faeces. Free-living males also have pointed spicules, but the first adanal papilla is displaced dorsally relative to the line connecting the subventral preanal and second adanal papilla. This group includes S. papillosus, S. fuelleborni, S. cebus, S. planiceps, S. ransomi and S. venezuelensis. While Chandler AC (Reference Chandler1925)’s framework offers a broad morphological classification that partially aligns with later molecular-genetic findings, it is overly simplistic and does not account for all known species.
Molecular taxonomy of Strongyloides
Molecular taxonomic tools and techniques
The advent of molecular techniques and DNA sequencing has revolutionized the taxonomy of Strongyloides spp. Commonly used genetic markers for characterizing Strongyloides include the small subunit (18S) rRNA gene, mitochondrial cytochrome c oxidase subunit I (cox1), the large subunit (28S) rRNA gene and the Internal Transcribed Spacer (ITS) region (Bradbury et al., Reference Bradbury, Pafčo, Nosková and Hasegawa2021; Al-Jawabreh et al., Reference Al-Jawabreh, Lastik, McKenzie, Reynolds, Suleiman, Mousley, Atkinson and Hunt2024b). Of these, partial cox1 sequences (217–750 bp) and single nucleotide polymorphisms within the hypervariable region IV (HVR-IV; 23-39 bp) of 18S rRNA are particularly informative for inferring species identity and intraspecific relationships (Hasegawa et al., Reference Hasegawa, Hayashida, Ikeda and Sato2009, Reference Hasegawa, Sato, Fujita, Nguema, Nobusue, Miyagi, Kooriyama, Takenoshita, Noda and Sato2010; Bradbury et al., Reference Bradbury, Pafčo, Nosková and Hasegawa2021). These markers have been widely adopted in phylogenetic and population genetic studies of the genus (Table 3).
Summary of phylogenetic or population genetic studies of Strongyloides species infecting humans, dogs and cats

Table 3 Long description
This table provides a comprehensive overview of phylogenetic and population genetic studies on Strongyloides species infecting humans, dogs, and cats. It includes data from multiple countries, highlighting the host species, DNA sources, gene regions analyzed, and sequencing methods used. Key findings include the use of Sanger and Illumina sequencing methods to analyze gene regions such as 18S rRNA, cox1, and ITS-1. The studies cover a wide range of geographical locations, including the USA, Iran, Japan, and Australia, among others. Notably, the table reveals a focus on the infective third-stage larvae and free-living adults as DNA sources. The data also indicate a trend towards using whole genome sequencing in more recent studies. Some entries lack specific data, such as GenBank accessions, which may limit the interpretation of certain studies.
na, not applicable; nd, no data; NHP, non-human primate; iL3, infective third-stage filariform larvae; L1r, rhabditiform larvae.
ϯZoo-kept animal; βSpecies identity questionable.
* Secondary analysis of existing data.
More recently, mitochondrial genome and whole-genome sequencing have been applied in Strongyloides taxonomy (Ko et al., Reference Ko, Haraguchi, Hara, Hieu, Ito, Tanaka, Tanaka, Suzumura, Ueda and Yoshida2023; de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024; Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025; Richins et al., Reference Richins, Sapp, Juhasz, Cunningham, LaCourse, Stothard and Barratt2025). Compared to traditional markers such as cox1 and 18S rRNA HVR-IV, these approaches offer a larger number of phylogenetically informative sites, enabling higher resolution at both interspecific and intraspecific levels. However, their use is limited by the scarcity of high-quality reference genomes. To date, genome assemblies are available for only 4 species: S. stercoralis, S. papillosus, S. ratti and S. venezuelensis (Hunt et al., Reference Hunt, Tsai, Coghlan, Reid, Holroyd, Foth, Tracey, Cotton, Stanley and Beasley2016; Kounosu et al., Reference Kounosu, Sun, Maeda, Dayi, Yoshida, Maruyama, Hunt, Sugimoto and Kikuchi2024). Most assemblies are fragmented, having been generated using short-read sequencing technologies, although long-read data have recently improved genome quality for S. stercoralis and S. ratti (Kounosu et al., Reference Kounosu, Sun, Maeda, Dayi, Yoshida, Maruyama, Hunt, Sugimoto and Kikuchi2024). The reference genome for S. stercoralis (strain PV001) is derived from a laboratory-maintained line originally isolated from a natural infection over 4 decades ago (the UPD strain), which may not accurately represent the genetic diversity of contemporary wild populations (Schad et al., Reference Schad, Hellman and Muncey1984; Hunt et al., Reference Hunt, Tsai, Coghlan, Reid, Holroyd, Foth, Tracey, Cotton, Stanley and Beasley2016; Kounosu et al., Reference Kounosu, Sun, Maeda, Dayi, Yoshida, Maruyama, Hunt, Sugimoto and Kikuchi2024).
Conventional polymerase chain reaction (PCR) followed by Sanger sequencing is suitable for barcoding individual Strongyloides isolates. However, when analysing total DNA extracted from complex biological samples such as faeces, where multiple Strongyloides genotypes may be present, deep amplicon sequencing is required. A metabarcoding assay targeting regions of cox1 and 18S rRNA HVR-I and HVR-IV has been developed for use on the Illumina MiSeq platform (Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019) and applied in several faecal surveys (Table 3). However, such metabarcoding approaches face several challenges, including the need for extensive protocol optimization. For example, sequencing success rates from faecal DNA extracts were reported at 63% for cox1, 80% for 18S rRNA HVR-I and 68% for HVR-IV (Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019). In addition, these analyses require substantial bioinformatics expertise, and incomplete reference libraries may further impact the accuracy and resolution of taxonomic assignments.
Intraspecific and cryptic diversity
Strongyloides stercoralis
Genotyping of Strongyloides was first attempted by Ramachandran et al. (Reference Ramachandran, Gam and Neva1997) using PCR–restriction fragment length polymorphism (RFLP). This study analysed partial 28S rRNA and ITS across multiple Strongyloides spp., including S. stercoralis. While all human-derived S. stercoralis isolates were indistinguishable, several distinct RFLP profiles differentiated them from a canine strain originally isolated from a naturally infected beagle and subsequently maintained in laboratory dogs at the University of Pennsylvania (the UPD strain) (Schad et al., Reference Schad, Hellman and Muncey1984). To identify more informative markers for species discrimination, Hasegawa and colleagues examined HVR-I to HVR-IV of 18S rRNA and a 722 bp fragment of cox1. Although species-specific clustering was observed, these loci did not consistently distinguish S. stercoralis isolates from humans, dogs and chimpanzees (Hasegawa et al., Reference Hasegawa, Hayashida, Ikeda and Sato2009, Reference Hasegawa, Sato, Fujita, Nguema, Nobusue, Miyagi, Kooriyama, Takenoshita, Noda and Sato2010).
Two subsequent genotyping surveys in Asia demonstrated the phylogenetic divergence of S. stercoralis into 2 lineages based on cox1 sequence data: one infecting both humans and dogs (cox1 lineage A) and the other found exclusively in dogs (cox1 lineage B) (Jaleta et al., Reference Jaleta, Zhou, Bemm, Schär, Khieu, Muth, Odermatt, Lok and Streit2017; Nagayasu et al., Reference Nagayasu, Aung, Hortiwakul, Hino, Tanaka, Higashiarakawa, Olia, Taniguchi, Win and Ohashi2017). Jaleta et al. (Reference Jaleta, Zhou, Bemm, Schär, Khieu, Muth, Odermatt, Lok and Streit2017) also analysed the 18S rRNA HVR-I and HVR-IV regions, finding that 18S rRNA HVR-IV haplotype A corresponded with cox1 lineage A, while 18S rRNA HVR-IV haplotype B corresponded with cox1 lineage B. Furthermore, they observed that although cox1 and 18S rRNA HVR-IV sequences reliably distinguished the 2 lineages, 18S rRNA HVR-I haplotypes did not correlate with host specificity.
The genotyping scheme established by Jaleta et al. (Reference Jaleta, Zhou, Bemm, Schär, Khieu, Muth, Odermatt, Lok and Streit2017) and Nagayasu et al. (Reference Nagayasu, Aung, Hortiwakul, Hino, Tanaka, Higashiarakawa, Olia, Taniguchi, Win and Ohashi2017) has since been expanded in multiple population genetic studies. cox1 lineage A has been identified globally in humans, dogs, cats and NHPs (Hasegawa et al., Reference Hasegawa, Sato, Fujita, Nguema, Nobusue, Miyagi, Kooriyama, Takenoshita, Noda and Sato2010; Laymanivong et al., Reference Laymanivong, Hangvanthong, Insisiengmay, Vanisaveth, Laxachack, Jongthawin, Sanpool, Thanchomnang, Sadaow and Phosuk2016; Jaleta et al., Reference Jaleta, Zhou, Bemm, Schär, Khieu, Muth, Odermatt, Lok and Streit2017; Thanchomnang et al., Reference Thanchomnang, Intapan, Sanpool, Rodpai, Tourtip, Yahom, Kullawat, Radomyos, Thammasiri and Maleewong2017; Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019; Basso et al., Reference Basso, Grandt, Magnenat, Gottstein and Campos2019; Beknazarova et al., Reference Beknazarova, Barratt, Bradbury, Lane, Whiley and Ross2019; Wulcan et al., Reference Wulcan, Dennis, Ketzis, Bevelock and Verocai2019; Aupalee et al., Reference Aupalee, Wijit, Singphai, Rödelsperger, Zhou, Saeung and Streit2020; Sanpool et al., Reference Sanpool, Intapan, Rodpai, Laoraksawong, Sadaow, Tourtip, Piratae, Maleewong and Thanchomnang2020; Salant et al., Reference Salant, Harel, Moreshet, Baneth, Mazuz and Yasur-Landau2021; Repetto et al., Reference Repetto, Braghini, Risso, Argüello, Batalla, Stecher, Sierra, Burgos, Radisic and Cappa2022; Borrás et al., Reference Borrás, Pérez, Repetto, Barrera, Risso, Montoya, Miró, Fernandez, Telesca and Britton2023; Nosková et al., Reference Nosková, Modrý, Baláž, Červená, Jirků‐Pomajbíková, Zechmeisterová, Leowski, Petrželková, Pšenková and Vodička2023, Reference Nosková, Svobodová, Hypská, Cerezo-Echevarria, Kurucová, Ilík, Modrý and Pafčo2024; Beiromvand et al., Reference Beiromvand, Ashiri, de Ree, Harbecke, Rödelsperger, Streit and Rafiei2024; de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024). In contrast, cox1 lineage B has been reported exclusively in dogs from Southeast Asia (Jaleta et al., Reference Jaleta, Zhou, Bemm, Schär, Khieu, Muth, Odermatt, Lok and Streit2017; Nagayasu et al., Reference Nagayasu, Aung, Hortiwakul, Hino, Tanaka, Higashiarakawa, Olia, Taniguchi, Win and Ohashi2017), South Asia (de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024) and Australia (Beknazarova et al., Reference Beknazarova, Barratt, Bradbury, Lane, Whiley and Ross2019). An exception to this is the recent identification of a human isolate from Bangladesh carrying the dog-specific mitochondrial (cox1 lineage B) and nuclear (HVR-IV haplotype V) genotypes, suggesting possible incidental zoonotic transmission (de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024).
To date, genotyping surveys have identified 6 18S rRNA HVR-IV haplotypes (A, B, C, E, J, V) and 11 HVR-I haplotypes (I–XII, XV) within S. stercoralis (Bradbury et al., Reference Bradbury, Pafčo, Nosková and Hasegawa2021). 18S rRNA HVR-IV haplotype A is the predominant genotype detected in humans, dogs and NHPs worldwide (Bradbury et al., Reference Bradbury, Pafčo, Nosková and Hasegawa2021). 18S rRNA HVR-IV haplotype B has been reported in dogs from Cambodia (Jaleta et al., Reference Jaleta, Zhou, Bemm, Schär, Khieu, Muth, Odermatt, Lok and Streit2017) and Australia (Beknazarova et al., Reference Beknazarova, Barratt, Bradbury, Lane, Whiley and Ross2019), while haplotype V was identified in canine isolates from Bangladesh and is likewise considered dog-specific (de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024). Other haplotypes include C, isolated from a human infection in Southeast Asia but maintained via serial passage through laboratory dogs in Australia (Putland et al., Reference Putland, Thomas, Grove and Johnson1993); E, detected in canine and human strains from Australia and China, respectively (Beknazarova et al., Reference Beknazarova, Barratt, Bradbury, Lane, Whiley and Ross2019; Zhou et al., Reference Zhou, Fu, Pei, Kucka, Liu, Tang, Zhan, He, Chan and Rödelsperger2019); and J, reported in a human strain from the USA (Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019). Due to the high variability of 18S rRNA HVR-I haplotypes within host-specific S. stercoralis isolates, this region has not been considered a reliable marker for inferring host specificity (Bradbury et al., Reference Bradbury, Pafčo, Nosková and Hasegawa2021).
Two population genomics studies have provided new insights into the host specificity of S. stercoralis (de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024; Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025). de Ree et al. (Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024) analysed whole-genome sequences from worms isolated from 7 human hosts and 1 dog in Bangladesh. Their results largely support the previously described 2-lineage population structure of S. stercoralis. However, 2 dog-derived isolates possessed a nuclear genome containing 18S rRNA HVR-IV haplotype V and a mitochondrial genome corresponding to cox1 lineage A, suggesting historical inter-lineage hybridization (de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024). In a second, larger-scale study, Liu et al. (Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025) examined S. stercoralis from sympatric human (n = 26) and dog (n = 12) populations in Bangladesh, Cambodia and Thailand. Whole-genome analysis revealed that human- and dog-derived S. stercoralis form 2 largely distinct populations that diverged genetically approximately 8000–12 000 years ago. Nevertheless, evidence of introgression was detected, consistent with the findings of de Ree et al. (Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024), suggesting that reproductive isolation is incomplete. Also, 1 dog harboured a worm possessing human-type mitochondrial and nuclear genomes, supporting the potential for occasional cross-species transmission (Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025). Together, these studies support the hypothesis first proposed by Nagayasu et al. (Reference Nagayasu, Aung, Hortiwakul, Hino, Tanaka, Higashiarakawa, Olia, Taniguchi, Win and Ohashi2017), that S. stercoralis originally parasitized canids and subsequently adapted to humans and other hosts, likely following the domestication of dogs. Although the human- and dog-infecting S. stercoralis have diverged genetically, they have not undergone complete speciation.
In a separate study investigating the clinical relevance of S. stercoralis genotypes, Repetto et al. (Reference Repetto, Braghini, Risso, Argüello, Batalla, Stecher, Sierra, Burgos, Radisic and Cappa2022) analysed cox1 haplotypes in patients from South America and the Caribbean. No significant differences in clinical presentation were observed between haplotypes; however, reactivation of strongyloidiasis following ivermectin treatment was significantly less frequent in infections with cox1 haplotypes carrying the I152V mutation. These findings require validation in larger, geographically diverse cohorts.
Strongyloides fuelleborni fuelleborni
Genetic characterization of S. f. fuelleborni has been conducted on isolates from humans and NHPs across multiple African and Asian countries, as well as from imported African NHPs in St. Kitts and a UK safari park (Table 3). Most studies targeted partial cox1 and 18S rRNA, while 3 examined the complete mitochondrial genome (Ko et al., Reference Ko, Haraguchi, Hara, Hieu, Ito, Tanaka, Tanaka, Suzumura, Ueda and Yoshida2023; de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024; Richins et al., Reference Richins, Sapp, Juhasz, Cunningham, LaCourse, Stothard and Barratt2025). Across studies, S. f. fuelleborni isolates consistently showed allopatric clustering. At the cox1 locus, sequences grouped broadly into African and Asian clades, with each geographic cluster (A–I) containing isolates from sympatric human and NHP populations (Hasegawa et al., Reference Hasegawa, Kalousova, McLennan, Modry, Profousova-Psenkova, Shutt-Phillips, Todd, Huffman and Petrzelkova2016; Thanchomnang et al., Reference Thanchomnang, Intapan, Sanpool, Rodpai, Tourtip, Yahom, Kullawat, Radomyos, Thammasiri and Maleewong2017, Reference Thanchomnang, Intapan, Sanpool, Rodpai, Sadaow, Phosuk, Somboonpatarakun, Laymanivong, Tourtip and Maleewong2019; Frias et al., Reference Frias, Stark, Lynn, Nathan, Goossens, Okamoto and MacIntosh2018; Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019; Janwan et al., Reference Janwan, Rodpai, Intapan, Sanpool, Tourtip, Maleewong and Thanchomnang2020; Ko et al., Reference Ko, Haraguchi, Hara, Hieu, Ito, Tanaka, Tanaka, Suzumura, Ueda and Yoshida2023; de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024; Richins et al., Reference Richins, Sapp, Juhasz, Cunningham, LaCourse, Stothard and Barratt2025). Human isolates from PNG grouped within the Asian clade, suggesting possible historical introduction via human migration (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c). At the 18S rRNA locus, 5 HVR-I haplotypes (XII–XVII) and 11 HVR-IV haplotypes (K–U) have been identified (Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019; Richins et al., Reference Richins, Sapp, Ketzis, Willingham, Mukaratirwa, Qvarnstrom and Barratt2023, Reference Richins, Sapp, Juhasz, Cunningham, LaCourse, Stothard and Barratt2025). Asian-Pacific strains, regardless of host species, consistently belonged to HVR-IV haplotype S and HVR-I haplotype XIV (Sato et al., Reference Sato, Torii, Une and Ooi2007; Hasegawa et al., Reference Hasegawa, Hayashida, Ikeda and Sato2009; Thanchomnang et al., Reference Thanchomnang, Intapan, Sanpool, Rodpai, Tourtip, Yahom, Kullawat, Radomyos, Thammasiri and Maleewong2017; Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019; Janwan et al., Reference Janwan, Rodpai, Intapan, Sanpool, Tourtip, Maleewong and Thanchomnang2020; de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024; Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c). In contrast, African strains showed greater haplotypic diversity at both loci (Hasegawa et al., Reference Hasegawa, Hayashida, Ikeda and Sato2009, Reference Hasegawa, Sato, Fujita, Nguema, Nobusue, Miyagi, Kooriyama, Takenoshita, Noda and Sato2010, Reference Hasegawa, Kalousova, McLennan, Modry, Profousova-Psenkova, Shutt-Phillips, Todd, Huffman and Petrzelkova2016; Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019; Richins et al., Reference Richins, Sapp, Ketzis, Willingham, Mukaratirwa, Qvarnstrom and Barratt2023, Reference Richins, Sapp, Juhasz, Cunningham, LaCourse, Stothard and Barratt2025).
Hasegawa et al. (Reference Hasegawa, Kalousova, McLennan, Modry, Profousova-Psenkova, Shutt-Phillips, Todd, Huffman and Petrzelkova2016) hypothesized that S. f. fuelleborni diversified genetically through geographic dispersal and isolation associated with the migration of Old World primates from Africa to Asia by the end of the Miocene. If this hypothesis is correct, it becomes important to assess whether African and Asian S. f. fuelleborni differ sufficiently, both genomically and morphologically, to warrant recognition as distinct taxa. Viney et al. (Reference Viney, Ashford and Barnish1991) described subtle morphological differences between S. f. kellyi from PNG and S. f. fuelleborni from Africa. No morphological studies of S. f. fuelleborni from Asia have been reported. If S. f. kellyi is truly synonymous with the Asian clade of S. f. fuelleborni, these morphological distinctions may justify subspecific differentiation between the African and Asian lineages (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c).
To investigate the evolutionary history of S. f. fuelleborni, Ko et al. (Reference Ko, Haraguchi, Hara, Hieu, Ito, Tanaka, Tanaka, Suzumura, Ueda and Yoshida2023) examined mitochondrial gene arrangement patterns in Asian isolates and identified 2 distinct types. Type A, observed in wild isolates from Myanmar and Japan, contained a single tRNA-Met gene. Type B, found in captive NHPs from Japanese zoos, included 2 copies of this gene. Ko et al. (Reference Ko, Haraguchi, Hara, Hieu, Ito, Tanaka, Tanaka, Suzumura, Ueda and Yoshida2023) suggested that Type A may represent the ancestral state of the S. f. fuelleborni mitochondrial genome. Subsequently, Type A was also identified in human isolates from Bangladesh (de Ree et al., Reference de Ree, Nath, Barua, Harbecke, Lee, Rödelsperger and Streit2024). Richins et al. (Reference Richins, Sapp, Juhasz, Cunningham, LaCourse, Stothard and Barratt2025) analysed mitochondrial genomes from captive NHPs of putative African origin housed in a UK safari park and identified a novel arrangement, designated Type C. This arrangement also included 2 copies of the tRNA-Met gene but differed from Types A and B in overall gene order. Additionally, the mitochondrial genomes of these UK isolates were substantially larger (∼24 kilobases) than those of Asian S. fuelleborni (∼16 kilobases), due to expanded intergenic regions of unknown function. While the findings of Richins et al. (Reference Richins, Sapp, Juhasz, Cunningham, LaCourse, Stothard and Barratt2025) support a distinction between Asian and African clades of S. f. fuelleborni, they should be interpreted with caution, as the worms were derived from zoo-kept African NHPs of unknown duration in captivity. Further investigation using wild-caught African isolates is necessary to determine whether the mitochondrial arrangement observed in the UK samples reflects natural variation or adaptations acquired during captivity.
Strongyloides fuelleborni kellyi
Prior to the molecular identification of S. f. fuelleborni in New Guinea (Zhao et al., Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c), S. f. kellyi was considered the only non-S. stercoralis Strongyloides nematode infecting humans in the region (Zhao et al., Reference Zhao, Constantinoiu and Bradbury2025a). The only sequence data attributed to S. f. kellyi at that time was a 330 bp fragment of 18S rRNA (Dorris et al., Reference Dorris, Viney and Blaxter2002), which includes the HVR-I (Hasegawa et al., Reference Hasegawa, Hayashida, Ikeda and Sato2009). This sequence (AJ417029) was found to be identical to those of S. cebus (AJ417025) and S. papillosus (AJ417027) and clustered separately from S. f. fuelleborni and S. stercoralis in the same analysis (Dorris et al., Reference Dorris, Viney and Blaxter2002). Zhao et al., (Reference Zhao, Haidamak, Noskova, Ilik, Pafčo, Ford, Masiria, Maure, Kotale, Pomat, Gordon, Navarro, Horwood, Constantinoiu, Greenhill and Bradbury2025c) later demonstrated that the genospecies identified by Dorris et al. (Reference Dorris, Viney and Blaxter2002) was inconsistent with the formal designation of S. f. kellyi proposed by Viney et al. (Reference Viney, Ashford and Barnish1991) and likely represents an undescribed Strongyloides sp. infecting humans in PNG.
Strongyloides planiceps
Fourteen sequences of S. planiceps are available from three studies (Hasegawa et al., Reference Hasegawa, Hayashida, Ikeda and Sato2009, Reference Hasegawa, Sato, Fujita, Nguema, Nobusue, Miyagi, Kooriyama, Takenoshita, Noda and Sato2010; Ko et al., Reference Ko, Suzuki, Canales-Ramos, MPPTH, Htike, Yoshida, Montes, Morishita, Gotuzzo and Maruyama2020), targeting cox1 (n = 9), 18S rRNA (n = 4) or 28S rRNA (n = 1) loci. All sequenced isolates were obtained from raccoon dogs (Nyctereutes procyonoides) in Japan. Phylogenetic analyses of cox1 sequences (Hasegawa et al., Reference Hasegawa, Sato, Fujita, Nguema, Nobusue, Miyagi, Kooriyama, Takenoshita, Noda and Sato2010; Ko et al., Reference Ko, Suzuki, Canales-Ramos, MPPTH, Htike, Yoshida, Montes, Morishita, Gotuzzo and Maruyama2020) and concatenated 18SrRNA and 28S rRNA sequences (Ko et al., Reference Ko, Suzuki, Canales-Ramos, MPPTH, Htike, Yoshida, Montes, Morishita, Gotuzzo and Maruyama2020) confirmed that S. planiceps is genetically distinct from S. stercoralis and S. f. fuelleborni. Intraspecific genetic diversity within S. planiceps has not yet been studied.
Strongyloides species of unknown identity
Published sequences of unidentified Strongyloides spp. from dogs and cats include 5 cox1 sequences and 2 18S rRNA sequences from Australian dogs (Beknazarova et al., Reference Beknazarova, Barratt, Bradbury, Lane, Whiley and Ross2019) and 32 sequences of cox1 (n = 28), 18S rRNA (n = 2), 28S rRNA (n = 1) and mitochondrial genome (n = 1) from cats in Myanmar (Ko et al., Reference Ko, Suzuki, Canales-Ramos, MPPTH, Htike, Yoshida, Montes, Morishita, Gotuzzo and Maruyama2020).
Beknazarova et al. (Reference Beknazarova, Barratt, Bradbury, Lane, Whiley and Ross2019) conducted metabarcoding of faecal DNA from 20 dogs and 4 humans in remote northern Australia. In 2 dogs, they identified a Strongyloides sp. that was phylogenetically basal to all known S. stercoralis isolates at the cox1 locus. One of these dogs also harboured unique 18S rRNA HVR-I and HVR-IV haplotypes (genotype VIII/F). These findings should be interpreted with caution, as they may represent transient passage of Strongyloides DNA from other hosts consumed in the dog’s diet or from environmental sources rather than true infections. Nonetheless, the possibility of a novel, undescribed species, or a genetically distinct S. stercoralis lineage endemic to Australian dogs, cannot be ruled out.
Ko et al. (Reference Ko, Suzuki, Canales-Ramos, MPPTH, Htike, Yoshida, Montes, Morishita, Gotuzzo and Maruyama2020) sequenced partial cox1, 18S rRNA, 28S rRNA and the mitochondrial genome from 70 Strongyloides isolates obtained from 19 cats in Myanmar. All 18S rRNA sequences were identical. Phylogenetic analysis of mitochondrial protein-coding genes and cox1 placed these isolates in a sister clade to S. stercoralis. Ko et al. (Reference Ko, Suzuki, Canales-Ramos, MPPTH, Htike, Yoshida, Montes, Morishita, Gotuzzo and Maruyama2020) suggested that this cat-derived Strongyloides sp. may represent S. felis, but the absence of morphological characterization makes this conclusion speculative. Similarly, Jitsamai (Reference Jitsamai2019) analysed a 708 bp fragment of 18S rRNA from Strongyloides isolates obtained from cats in Thailand and found that they formed a sister group to S. stercoralis and S. procyonis. Although morphological examination of the free-living stages supported identification as S. felis, this diagnosis is dubious due to deviations from established morphological criteria. Moreover, the 18S rRNA sequences from this study are not publicly available in GenBank, which precludes further verification.
Limitations of sequence-based taxonomy
A fundamental limitation in the molecular taxonomy of Strongyloides is that species have historically been defined on the basis of morphological characters of the adult stages. Most contemporary sequence data, however, are generated from DNA extracted from faeces of infected hosts or from larvae isolated from faeces (Table 3), stages that do not permit reliable speciation based on morphology (Little, Reference Little1966a; Speare, Reference Speare1986, Reference Speare and Grove1989). As a result, sequences derived from these sources cannot be confidently assigned to morphologically defined taxa, except in the rare cases where the corresponding adult worms have been recovered and morphologically identified. Despite this, such sequences are frequently assigned species names, typically based on the host species from which the sample was collected. This introduces a circularity: host identity is used to infer species identity of the sequence, which then becomes the basis for conclusions about host specificity, population structure or species boundaries (Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025). Molecular data should therefore be interpreted with caution. Ideally, sequence-based assignments should be validated through morphological identification of the corresponding adult parasitic or free-living stages. Where such verification is not possible, molecular identifications should be regarded as provisional, and any taxonomic or phylogenetic analyses should explicitly acknowledge this limitation.
A further limitation arises from the reliance on single mitochondrial or nuclear loci for phylogenetic inference in much of the existing literature (Table 3). These loci represent only a minute fraction of the genome and often contain few phylogenetically informative sites, sometimes as few as 20–30 bp among several hundred analysed, as observed for 18S rRNA HVRs (Hasegawa et al., Reference Hasegawa, Hayashida, Ikeda and Sato2009). While these regions are highly conserved and generally effective for distinguishing major lineages and inferring interspecific relationships (Hasegawa et al., Reference Hasegawa, Hayashida, Ikeda and Sato2009, Reference Hasegawa, Sato, Fujita, Nguema, Nobusue, Miyagi, Kooriyama, Takenoshita, Noda and Sato2010; Barratt et al., Reference Barratt, Lane, Talundzic, Richins, Robertson, Formenti, Pritt, Verocai, Nascimento de Souza and Mato Soares2019; Bradbury et al., Reference Bradbury, Pafčo, Nosková and Hasegawa2021), they may not reliably resolve intraspecific diversity or fine-scale population structure (Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025). In contrast, whole-genome analysis examines thousands to millions of informative sites across the genome, providing substantially greater resolving power and enabling more robust, statistically supported phylogenetic and population genetic inferences (Al-Jawabreh et al., Reference Al-Jawabreh, Lastik, McKenzie, Reynolds, Suleiman, Mousley, Atkinson and Hunt2024b). Nevertheless, its use remains limited, largely due to technical complexity, cost and resource constraints.
The complex reproductive biology of Strongyloides spp. poses additional challenges for molecular taxonomy. Parasitic females reproduce obligately by mitotic parthenogenesis, whereas facultative free-living adults reproduce sexually (Viney, Reference Viney2006; Streit, Reference Streit2008). Development can follow an asexual (direct) or sexual (indirect) route, influenced by environmental conditions and host factors, and this balance may shift over evolutionary time (Harvey et al., Reference Harvey, Gemmill, Read and Viney2000). Principally asexual populations of S. stercoralis have been reported from Asia (Kikuchi et al., Reference Kikuchi, Hino, Tanaka, Aung, Afrin, Nagayasu, Tanaka, Higashiarakawa, Win and Hirata2016; Zhou et al., Reference Zhou, Fu, Pei, Kucka, Liu, Tang, Zhan, He, Chan and Rödelsperger2019). Because parthenogenesis is obligatory in the parasitic stage, patterns of genetic divergence may deviate from expectations under species concepts that assume regular sexual reproduction and gene flow (Viney, Reference Viney2006; Streit, Reference Streit2017). For example, population genomic analysis of S. ratti from the UK revealed a swarm of highly divergent clonal genotypes that are nonetheless regarded as a single species (Cole et al., Reference Cole, Holroyd, Tracey, Berriman and Viney2023). This pattern illustrates how asexual reproduction can facilitate the long-term persistence of genetically distinct lineages within a nominal taxon. This, in turn, creates a taxonomic dilemma: although these lineages are genetically well differentiated, classical species concepts based on reproductive isolation offer little guidance where sexual reproduction is rare or absent (Streit, Reference Streit2017). These issues have important implications for interpreting population structure and host specificity in Strongyloides spp. when applying population genetic or population genomic approaches (Cole et al., Reference Cole, Holroyd, Tracey, Berriman and Viney2023; Liu et al., Reference Liu, Sarker, Sripa, Tangkawattana, Khieu, Nevin, Paterson and Viney2025). Whether alternative species concepts can be meaningfully applied to Strongyloides remains an open question.
Conclusion
The taxonomy of Strongyloides in humans and companion animals has historically relied on morphology but is increasingly informed by molecular genetics. Integrating morphological and genomic data offers the greatest potential for resolving taxonomic ambiguities within the genus. Future research should prioritize genomic characterization of diverse Strongyloides strains from humans and animals, refine reference genomes, optimize DNA barcoding protocols and undertake detailed comparative morphological analyses to support taxonomic delineation. Additionally, efforts must be made to preserve and sustain morphological expertise to ensure its continued relevance alongside advancing molecular techniques.
Author contributions
RSB conceived the review. HZ drafted the manuscript and undertook data visualization. RSB and CC revised and edited the manuscript. All authors contributed to, reviewed, and approved, the final draft of the manuscript.
Financial support
This research received no specific grant from any funding agency, commercial or not-for-profit sectors. HZ’s work is supported by the Australian Government Research Training Program Scholarship through James Cook University, Australia.
Competing interests
The authors declare there are no conflicts of interest.
Ethical standards
Not applicable.
