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Rapid detection of acetolactate synthase inhibitor–resistant weeds using novel full-spectrum imaging and a hyperparameter-tuned convolutional neural network

Published online by Cambridge University Press:  13 January 2025

Pauline Victoria Estrada
Affiliation:
Student, Clovis North High School, Fresno, CA, USA
John Benedict Estrada
Affiliation:
Undergraduate student, University of California–Berkeley, College of Computing, Data Science, and Society, Berkeley, CA, USA
Jennifer Valdez-Herrera
Affiliation:
Graduate student, California State University–Fresno, Department of Plant Science, Fresno, CA, USA
Anil Shrestha*
Affiliation:
Professor, California State University–Fresno, Department of Plant Science, Fresno, CA, USA
*
Corresponding author: Anil Shrestha; Email: ashrestha@mail.fresnostate.edu
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Abstract

Herbicide-resistant weeds are fast becoming a substantial global problem, causing significant crop losses and food insecurity. Late detection of resistant weeds leads to increasing economic losses. Traditionally, genetic sequencing and herbicide dose-response studies are used to detect herbicide-resistant weeds, but these are expensive and slow processes. To address this problem, an artificial intelligence (AI)-based herbicide-resistant weed identifier program (HRIP) was developed to quickly and accurately distinguish common chickweed plants that are resistant to acetolactate synthase (ALS) inhibitor herbicides and those that are susceptible to ALS inhibitors. A regular camera was converted to capture light wavelengths from 300 to 1,100 nm. Full-spectrum images from a 2-yr experiment were used to develop a hyperparameter-tuned convolutional neural network model using a “train from scratch” approach. This novel approach exploits the subtle differences in the spectral signature of ALS inhibitor-resistant and ALS inhibitor-susceptible common chickweed plants as they react differently to the ALS-inhibiting herbicide treatments. The HRIP was able to identify ALS-inhibitor–resistant common chickweed as early as 72 h after treatment at an accuracy of 88%. It has broad applicability due to its ability to distinguish common chickweed plants that are resistant to ALS-inhibitor herbicides from those that are susceptible to becoming resistant to them regardless of the type of ALS herbicide or dose used. Using tools such as the HRIP will allow farmers to make timely interventions to prevent the herbicide-escape plants from completing their life cycle and adding to the weed seedbank.

Information

Type
Research Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2025. Published by Cambridge University Press on behalf of Weed Science Society of America
Figure 0

Figure 1. A converted Fujifilm X-T200 camera.

Figure 1

Figure 2. Program used to successfully import the full-spectrum images.

Figure 2

Figure 3. Full-spectrum images before the Keras data augmentation program was employed (A). Rotated and flipped full spectrum images improved by Keras data augmentation program (B).

Figure 3

Figure 4. Output showing 36 epochs needed to generate the most optimized/best convolutional neural network (CNN) model.

Figure 4

Figure 5. Step-by-step identification of herbicide-resistant weeds using the herbicide-resistant weed identifier program (HRIP).

Figure 5

Figure 6. Output describing the characteristics of the herbicide-resistant weed classification model.

Figure 6

Figure 7. Training and validation loss curves showing steadily decreasing values and the accuracy curves show steadily increasing values with optimal gaps between them indicating optimal learning without overfitting.

Figure 7

Table 1. Discriminative classification of common chickweed plants.a

Figure 8

Figure 8. The herbicide-resistant weed identifier program (HRIP), which indicates a weed classification of “Resistant”.

Figure 9

Figure 9. Confusion matrix showing the performance of herbicide-resistant weed identifier program (HRIP) running the herbicide-resistant classification model. (The resistant chickweed image is classified as positive, while the susceptible chickweed image is classified negative.)

Figure 10

Figure 10. Illustration of comparison of spectral signatures of healthy and unhealthy plants.