Hostname: page-component-89b8bd64d-dvtzq Total loading time: 0 Render date: 2026-05-07T10:24:00.720Z Has data issue: false hasContentIssue false

An RNA-seq transcriptome analysis for investigating the anti-lung cancer activity of medicinal Cuscuta chinensis Lam plant

Published online by Cambridge University Press:  05 December 2022

Aikebaier Maimaiti
Affiliation:
School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou 310053, Zhejiang, People’s Republic of China School of Medicine, Xinjiang Medical University, Urumqi 830017, Xinjiang, People’s Republic of China
Juewen Xu
Affiliation:
School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou 310053, Zhejiang, People’s Republic of China
Linsen Shi*
Affiliation:
School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou 310053, Zhejiang, People’s Republic of China
*
*Corresponding author: Linsen Shi, email pjstone@163.com
Rights & Permissions [Opens in a new window]

Abstract

Cuscuta chinensis Lam. is a traditional medicinal herb used to treat female sterility and male reproductive system disorders. However, the anti-lung cancer properties of Cuscuta chinensis Lam. and possible molecular mechanisms have yet to be explored. Thus, the study’s main purpose was to evaluate in vitro and in vivo anti-lung cancer properties of C. chinensis water extract (CLW) in human lung adenocarcinomas and the underlying molecular mechanism involved. Our results demonstrated that CLW caused a significant inhibition of cell viability and induced G1 cycle arrest in lung cancer cells. Furthermore, RNA-seq transcriptome analysis revealed 602 common genes with a significant expression in A549 and H1650 cells under CLW treatment. Functional enrichment analysis suggested that these common genes regulated by CLW mainly involve lung cancer cell proliferation, metastases and apoptosis processes. In addition, forty-six common genes (> 2-fold change) regulated by CLW in A549 and H1650 cells were selected for further validation. In vitro quantitative real-time PCR results confirmed that twelve genes were up-regulated, and four genes were down-regulated in A549 and H1650 cells. The in vivo experiment demonstrated CLW could significantly decrease tumour volume and tumour weight of mice compared with the control group. Moreover, in vivo quantitative real-time PCR results revealed that C11orf96, FGFBP1, FOSB and NPTX1 genes were up-regulated and EGR1, GBP4 and MAP2K6 genes were down-regulated in tumour tissues compared with the control group. These data strongly suggest that CLW could be developed as an efficacious drug for lung cancer treatment.

Information

Type
Research Article
Copyright
© The Author(s), 2022. Published by Cambridge University Press on behalf of The Nutrition Society
Figure 0

Table 1. Primer sequences

Figure 1

Table 2. Primer sequences

Figure 2

Fig. 1. Inhibition of cell viability of CLW in lung cancer cell lines. (a) Cell viability of A549 cells treated with 0·195–3·125 mg/ml CLW for 24 h, 48 h and 72 h. (b) Cell viability of H1650 cells treated with 0·195–3·125 mg/ml CLW for 24 h, 48 h and 72 h. (c) Cell viability of BEAS-2B cells treated with 0·195–3·125 mg/ml CLW for 24 h, 48 h and 72 h. (d) The comparison of cell viability in A549, H1650 and BEAS-2B cells following treatment with CLW at 0·195–3·125 mg/ml concentration for 48 h. After 24 h, 48 h and 72 h, cell viability was determined and expressed as a percent of control cells using one-way ANOVA. Representative experiments, n 3, mean ± sd. *P < 0·05, **P < 0·01. CLW, Cuscuta chinensis water extract.

Figure 3

Fig. 2. Inducement of cell cycle arrest by CLW in lung cancer cell lines. (a) Flow cytometric analysis of the cell cycle phase fractions of A549 cells treated with 0·78–3·125 mg/ml CLW for 24 h. (b) Flow cytometric analysis of the cell cycle phase fractions of H1650 cells treated with 0·78–3·125 mg/ml CLW for 24 h. (c) Flow cytometric analysis of the cell cycle phase fractions of BEAS-2B cells treated with 0·78–3·125 mg/ml CLW for 24 h. The percentage of cell cycle fractions was obtained using one-way ANOVA. Representative experiments, n 3, mean ± sd. *P < 0·05, **P < 0·01. CLW, Cuscuta chinensis water extract.

Figure 4

Fig. 3. The global gene expression of lung cancer cell lines after CLW treatment. (a) The differentially expressed genes between CLW and control in A549 cells after treatment for 24 h. The blue dots represented genes without different expressions between the two groups, and the red dots represented different expressions between the two groups. (b) Hierarchical cluster analysis of significant differential expression genes in A549 cells after CLW treatment for 24 h. Red represented increasing in expression, and blue represented decreasing in expression. (c) The differentially expressed genes between CLW and control in H1650 cells after treatment for 24 h. The blue dots represented genes without different expressions between two groups, and the red dots represented different expressions between two groups. (d) Hierarchical cluster analysis of significant differential expression genes in H1650 cells after CLW treatment for 24 h. Red represented increasing in expression, and blue represented decreasing in expression. Representative experiments, n 3, mean ± sd. *P < 0·05, **P < 0·01, ***P < 0·001, ****P < 0·0001. CLW, Cuscuta chinensis water extract.

Figure 5

Fig. 4. GO terms and KEGG pathways enriched by differentially expressed common genes. (a) Venn diagram analysis of global gene expression from lung cancer cells identified by RNA-seq. Genes having a significant change in expression were collected and classified. The number of significant differential expression genes from A549 and H1650 cells after CLW treatment for 24 h was 2795 and 2568, respectively. In two cell lines, 602 genes were commonly altered. (b) The ten top category terms of GO analysis. The y-axes correspond to the GO terms, and the x-axes show the enrichment factor. (c) The ten top signalling pathways of KEGG analysis. The y-axes correspond to the pathways, and the x-axes show the enrichment factor. The colour of the dot represents the P-value, and the size of the dot represents the number of common genes mapped to the reference. CLW, Cuscuta chinensis water extract, KEGG, Kyoto Encyclopaedia of Genes and Genomes; GO, Gene Ontology.

Figure 6

Fig. 5. The qRT-PCR validation. (a) Venn diagram analysis of global gene expression from lung cancer cells identified by RNA-seq. Genes having a significant (greater than two-fold) change in expression were collected and classified. The number of significant differential expression genes from A549 and H1650 cells after CLW treatment for 24 h was 574 and 558 (greater than two-fold), respectively. In two cell lines, 55 genes (greater than two-fold) were commonly altered. (b) A549 cells were incubated with or without CLW 3·125 mg/ml for 24 h. The expressions of common genes (46 consistently regulated genes) were determined by qRT-PCR. (c) H1650 cells were incubated with or without CLW 3·125 mg/ml for 24 h. The expressions of common genes (46 consistently regulated genes) were determined by qRT-PCR. The average relative gene expression changes compared with the control, calculated using GAPDH. The mRNA expression differences between the treated and control samples were determined using one-way ANOVA. Representative experiments, n 3, mean ± sd. *P < 0·05, **P < 0·01, ***P < 0·001, ****P < 0·0001. CLW, Cuscuta chinensis water extract; qRT-PCR, quantitative real-time PCR.

Figure 7

Table 3. Differentially expressed common genes after Cuscuta chinensis Lam. treatment by A549 and H1650 cells (log2 ratio)

Figure 8

Fig. 6. CLW suppresses xenograft tumour growth in mice. (a) Efficacy of CLW on tumour growth in nude mice injected with A549 cells. A549 cells were trypsinised and resuspended in F-12K media for subcutaneous inoculation into the right flank of nude mice, which were treated with the indicated concentrations of CLW. Relative inhibition rates of treatment groups compared to control mice (b) Images of xenograft tumours obtained from the mice (n 6 for each group). (c) The tumour weight of mice was recorded at the end of the experiments. (d) The body weight of mice was recorded on the last day. Data represent mean ± sd (one-way ANOVA), **P < 0·01, ***P < 0·001, ****P < 0·0001. v. control mice. CLW, Cuscuta chinensis water extract.

Figure 9

Fig. 7. In vivo qRT-PCR validation. (a), (b), (c), (d), (e), (f), (g), (h), (i), (j), (k), (l), (m), (n), (o), (p) The expressions of common genes (sixteen consistently regulated genes in vitro) in A549 xenograft tumour tissues were determined by qRT-PCR. The average relative gene expression changes compared with the control mice were calculated using GAPDH. The mRNA expression differences between the treated and control samples were determined using one-way ANOVA. Representative experiments, n 6, mean ± sd. *P < 0·05, **P < 0·01, ***P < 0·001, ****P < 0·0001. qRT-PCR, quantitative real-time PCR.

Supplementary material: File

Maimaiti et al. supplementary material

Tables S1-S7

Download Maimaiti et al. supplementary material(File)
File 14.8 MB
Supplementary material: Image

Maimaiti et al. supplementary material

Figure S1

Download Maimaiti et al. supplementary material(Image)
Image 703.6 KB