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Hypomethylation of NANOG promoter in colonic mucosal cells of obese patients: a possible role of NF-κB

Published online by Cambridge University Press:  30 August 2018

Fatemeh Sedaghat
Affiliation:
Department of Cellular and Molecular Nutrition, Faculty of Nutrition Science and Food Technology, National Nutrition and Food Technology Research Institute, Shahid Beheshti University of Medical Sciences, 1981619573 Tehran, Iran
Makan Cheraghpour
Affiliation:
Nutrition and Metabolic Diseases Research Center, Ahvaz Jundishapur University of Medical Sciences, 6135715794 Ahvaz, Iran
Seyed Ahmad Hosseini
Affiliation:
Nutrition and Metabolic Diseases Research Center, Ahvaz Jundishapur University of Medical Sciences, 6135715794 Ahvaz, Iran
Katayoun Pourvali
Affiliation:
Department of Cellular and Molecular Nutrition, Faculty of Nutrition Science and Food Technology, National Nutrition and Food Technology Research Institute, Shahid Beheshti University of Medical Sciences, 1981619573 Tehran, Iran
Ladan Teimoori-Toolabi
Affiliation:
Molecular Medicine Department, Biotechnology Research Center, Pasteur Institute of Iran, 1316943551 Tehran, Iran
Amirhosein Mehrtash
Affiliation:
Molecular Medicine Department, Biotechnology Research Center, Pasteur Institute of Iran, 1316943551 Tehran, Iran
Ramin Talaei
Affiliation:
Faculty of Medicine, Shahid Modaress Hospital, Shahid Beheshti University of Medical Sciences, 1998734383 Tehran, Iran
Hamid Zand*
Affiliation:
Department of Cellular and Molecular Nutrition, Faculty of Nutrition Science and Food Technology, National Nutrition and Food Technology Research Institute, Shahid Beheshti University of Medical Sciences, 1981619573 Tehran, Iran
*
*Corresponding author: H. Zand, email hamid_zand@sbmu.ac.ir, hamid_zand@gmail.com
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Abstract

Obesity and particularly central obesity are the main risk factors of colon cancer. All intestinal cell populations including stem cells, their progenitors and differentiated colonocytes seem to be the origin of colorectal cancer. However, recent data support the role of differentiated cells as cancer origin especially during inflammation. Based on Yamanaka’s seminal work, re-expression of few transcription factors in terminally differentiated cells creates stemness properti'es. Although these transcription factors are involved in tumorigenesis, they are epigenetically repressed in adult tissues. We proposed that obesity might regulate methylation of stemness genes in colonocytes via inflammatory signalling. Obesity-associated inflammation was analysed using Western blot analysis of phospho-IκB(inhibitor of NF-κB). Methylation-sensitive high-resolution melting analysis was performed on colonic mucosal samples of twenty obese and twenty normal-weight men to analyse promoter methylation of POU5F1 (OCT4), NANOG, MYC and CDKN2A. TNF-treated HT-29 cells were used to recapitulate the effect of NF-κB activation on stemness genes methylation. Our results showed that colonic phosphorylation of IκB, as a signal of NF-κB activation, was higher in obese subjects compared with their normal-weight counterparts. Moreover, promoter methylation of NANOG was likely to be lower in obese subjects and correlated with central obesity. HT-29 cells incubated by TNF-α showed hypomethylation of POU5F1 and MYC genes in addition to the NANOG. These results suggest that obesity-induced inflammation might be involved in the regulation of DNA methylation of oncogenic genes such as NANOG in differentiated colonocytes and thus predispose them to later oncogenic alterations.

Information

Type
Full Papers
Copyright
© The Authors 2018 
Figure 0

Table 1 Methylation-sensitive high-resolution melting primers and amplicon information

Figure 1

Table 2 Selected baseline characteristics of cases (twenty) and controls (twenty), Iranian case–control study, 2016–2017 (Mean values and standard deviations; medians and interquartile ranges (IQR); numbers and percentages)

Figure 2

Fig. 1 Phosphorylation of inhibitor of NF-κB (IκB) increases in the colon tissue samples of obese subjects. Frozen colon sample tissues were lysed by radioimmunoprecipitation assay buffer and an equal amount of protein was subjected to Western blot using primary antibodies against total phospho-IκB (Ser 32). Antiactin antibody was used as the loading control. Results are representative of three independent experiments.

Figure 3

Fig. 2 High-resolution melting aligned melt curves for the MYC, POU5F1, NANOG and CDKN2A methylation. Control curves (a) and one sample curves (b) for the MYC gene. Control curves (c) and one sample curves (d) for the POU5F1 gene. Control curves (e) and one sample curves (f) for the NANOG gene. Control curves (g) and one sample curves (h) for the CDKN2A gene. Standards: 100 %, black line; 75 %, red line; 50 %, orange line; 25 %, green line; 10 %, pink line; 5 %, gray line and 0 %, blue line.

Figure 4

Table 3 Association of obesity (BMI ≥30 kg/m2), central obesity and genes methylation by median categories of control group in a case–control study(Odds ratios and 95% confidence intervals)

Figure 5

Table 4 Association of NANOG, POU5F1 and MYC methylation status with selected demographic and lifestyle factors of the study subjects* (Odds ratios and 95 % confidence intervals)

Figure 6

Table 5 Methylation status of POU5F1, NANOG and MYC before and after TNF treatments*