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Bioinformatic analysis of eosinophil activity and its implications for model and target species

Published online by Cambridge University Press:  16 December 2019

C.J. Jenvey*
Affiliation:
Department of Animal, Plant and Soil Sciences, Agribio Centre for Agribioscience, School of Life Sciences, La Trobe University, Bundoora, Victoria, Australia
D. Alenizi
Affiliation:
Department of Animal, Plant and Soil Sciences, Agribio Centre for Agribioscience, School of Life Sciences, La Trobe University, Bundoora, Victoria, Australia
F. Almasi
Affiliation:
Department of Animal, Plant and Soil Sciences, Agribio Centre for Agribioscience, School of Life Sciences, La Trobe University, Bundoora, Victoria, Australia
C. Cairns
Affiliation:
Department of Animal, Plant and Soil Sciences, Agribio Centre for Agribioscience, School of Life Sciences, La Trobe University, Bundoora, Victoria, Australia
A. Holmes
Affiliation:
Department of Animal, Plant and Soil Sciences, Agribio Centre for Agribioscience, School of Life Sciences, La Trobe University, Bundoora, Victoria, Australia
S. Sloan
Affiliation:
Department of Animal, Plant and Soil Sciences, Agribio Centre for Agribioscience, School of Life Sciences, La Trobe University, Bundoora, Victoria, Australia
M.J. Stear
Affiliation:
Department of Animal, Plant and Soil Sciences, Agribio Centre for Agribioscience, School of Life Sciences, La Trobe University, Bundoora, Victoria, Australia
*
Author for correspondence: C.J. Jenvey, E-mail: C.Jenvey@latrobe.edu.au

Abstract

Eosinophils are important immune cells that have been implicated in resistance to gastrointestinal nematode (GIN) infections in both naturally and experimentally infected sheep. Proteins of particular importance appear to be IgA-Fc alpha receptor (FcαRI), C-C chemokine receptor type 3 (CCR3), proteoglycan 3 (PRG3, major basic protein 2) and EPX (eosinophil peroxidase). We used known human nucleotide sequences to search the ruminant genomes, followed by translation to protein and sequence alignments to visualize differences between sequences and species. Where a sequence was retrieved for cow, but not for sheep and goat, this was used additionally as a reference sequence. In this review, we show that eosinophil function varies among host species. Consequently, investigations into the mechanisms of ruminant immune responses to GIN should be conducted using the natural host. Specifically, we address differences in protein sequence and structure for eosinophil proteins.

Information

Type
Review Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
Copyright
Copyright © The Author(s), 2019. Published by Cambridge University Press
Figure 0

Fig. 1. The goat IgA receptor, FcαRI, may be dysfunctional in goats. Homology modelling of human, P24071.1 (A); sheep, XM_027976143.1 (B) and goat, XM_018059931.1 (C) IgA receptors revealed that human and sheep receptors have a similar conformation, however, the goat receptor has a C-terminus that is bent away from the main body of the protein and lacked an alpha helix within the transmembrane domain (blue).

Figure 1

Fig. 2. Eotaxin receptor, CCR3, may be dysfunctional in goats. Homology modelling revealed that the two sheep sequences [Q9N0M0 (B), W5PXW1 (C)] were identical except for two substitutions and all substitutions were at the C-terminal end of the sequence. The two goat sequences [JO419941.2 (A), LOC5316646 (D)] contained two substitutions compared to the sheep sequences. In addition, the goat genome sequence contained a frameshift deletion, corresponding to amino acid 330 (pink). Substitutions are colour coded by the following: aa 354 (blue), aa 356 (red), aa 357 (green) and aa 358 (orange).

Figure 2

Fig. 3. Major basic protein 2 is the only MBP molecule in ruminants. Homology modelling of MBP-1 and MBP-2 C-type lectin fold revealed high structural similarities between human MBP-2 and ruminant MBP-2 molecules, however, theoretical isoelectric point (pI) computation suggests that ruminant MBP-2 molecules may function similarly to human MBP-1. Amino acids used to calculate theoretical pI are as follows: aspartic acid (green), glutamic acid (orange), histidine (yellow), cysteine (red), tyrosine (pink), lysine (aqua) and arginine (blue). Molecules are presented in the order of percentage of sequence identity to human MBP-1, CR450311.1 (A) (highest to lowest): human MBP-2, NM_006093.4 (B); sheep XM_027979083.1 (C); sheep XM_027979084.1 (D); goat XM_018058941.1 (E); cow NM_001098471.1 (F); sheep XM_027979081.1 (G) and goat XM_018058942 (H).

Figure 3

Table 1. Theoretical isoelectric point (pI) of sequences for MBP molecules from humans, cows, sheep and goats

Figure 4

Fig. 4. Eosinophil peroxidase may be dysfunctional in goats. Homology modelling EPX heavy chain revealed goat EPX does not contain a tyrosine involved which is involved in post-translational modification of eosinophil granule proteins during eosinophil maturation in human eosinophils. The nitrated tyrosine (green) in the human, NM_000502.6 (A); cow, XM_024980582.1 (B) and sheep, contig. AMGL01017333.1 (C) sequences have been replaced by a cysteine (red) in the goat, contig. LWLT01000022.1 (D) sequence.

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