The right to silence and the presumption of innocence are fundamental to fair criminal proceedings. Section 313 of the Code of Criminal Procedure, 1973 (CrPC) permits courts in India to question the accused, allowing them to explain incriminating evidence. However, judicial interpretations of this provision have raised concerns about undermining these essential rights. This paper critically examines the evolving interpretations of Section 313 of the CrPC and their implications for the right to silence and the presumption of innocence. It argues that current judicial practices have turned the right to remain silent into a duty to provide explanations, contradicting natural justice principles. This study addresses three key questions: (1) How has the interpretation of Section 313 of the CrPC evolved in Indian jurisprudence, and what impact does this have on the accused’s right to remain silent? (2) In what ways does the current application of Section 313 of the CrPC conflict with Article 20(3) of the Constitution, which protects against self-incrimination? (3) What are the potential consequences of misapplying Section 313 on the presumption of innocence, and how can these issues be remedied through judicial or legislative reforms? The paper concludes with recommendations to preserve the integrity of the criminal justice system and ensure robust protection of the right to silence and the presumption of innocence.