Temporal variations in the taxonomic relatedness of periphytic ciliatemicrofauna during colonization periods were studied in coastal waters of theYellow Sea, northern China, from May to June 2010. Samples were collected attwo depths of 1 and 3 m, using glass slides as artificial substrates. Thecolonization dynamics of ciliate microfauna on the slides revealed similarpatterns in species composition at both depths. In the immature communities(1–7 days), the taxonomic patterns showed high variability compared to thosein the mature ones (10 days and more). However, taxonomic relatednessparameters at the two depths differed during early stages of colonization(e.g. 1–3 days). Taxonomic diversity (Δ) was subject to high variability(coefficients of variation >10%) in both immature and mature communities,whereas taxonomic distinctness (Δ*), average taxonomic distinctness (Δ+) and variation in taxonomic distinctness (Λ+)showed high stability (coefficients of variation <10%) during thecolonization times of 3–21 days. These findings suggest that 3–21-dayexposure times are sufficient to detect the taxonomic distinctness ofperiphytic ciliate microfauna at water depths of 1–3 m for the purposes ofecological research and monitoring of marine ecosystems.