This paper proposes a nonparametric approach to identify and estimate the generalized additive model with a flexible additive structure and with possibly discrete variables when the link function is unknown. Our approach allows for a flexible additive structure which provides applied researchers the flexibility to specify their model according to economic theory or practical experience. Motivated by the concerns from empirical research, our method also allows for multiple discrete variables in the covariates. By transforming our model into a generalized additive model with univariate component functions, our identification and estimation thereby follows a procedure adapted from the case with univariate components. The estimators converge to normal distributions in large sample with a one-dimensional convergence rate for the link function and a $d_k$-dimensional convergence rate for the component function $f_k(\cdot )$ defined on ${\mathbb R}^{d_k}$ for all k.