Hostname: page-component-76d6cb85b7-lcgwf Total loading time: 0 Render date: 2026-07-13T10:40:06.681Z Has data issue: false hasContentIssue false

Monitoring jaguar populations Panthera onca with non-invasive genetics: a pilot study in Brazilian ecosystems

Published online by Cambridge University Press:  26 March 2014

S. Roques*
Affiliation:
Department of Conservation Biology, Estación Biológica de Doñana, CSIC, Avenida Americo Vespuccio s/n, Isla de la Cartuja, Sevilla, Spain.
M. Furtado
Affiliation:
Jaguar Conservation Fund, Mineiros, Goiás, Brazil
A. T. A. Jácomo
Affiliation:
Jaguar Conservation Fund, Mineiros, Goiás, Brazil
L. Silveira
Affiliation:
Jaguar Conservation Fund, Mineiros, Goiás, Brazil
R. Sollmann
Affiliation:
Jaguar Conservation Fund, Mineiros, Goiás, Brazil
N. M. Tôrres
Affiliation:
Jaguar Conservation Fund, Mineiros, Goiás, Brazil
J. A. Godoy
Affiliation:
Department of Integrative Ecology, Estación Biológica de Doñana, CSIC, Sevilla, Spain
F. Palomares
Affiliation:
Department of Conservation Biology, Estación Biológica de Doñana, CSIC, Avenida Americo Vespuccio s/n, Isla de la Cartuja, Sevilla, Spain.
*
(Corresponding author) E-mail severine@ebd.csic.es
Rights & Permissions [Opens in a new window]

Abstract

The global population of jaguars Panthera onca has decreased significantly since the beginning of the 20th century. Given the scarcity of demographic and biological information, estimating population parameters is critical for the design of conservation measures. The jaguar's elusive behaviour makes it impossible to estimate and monitor populations by direct observation. We propose a non-invasive genetic sampling approach and demonstrate its potential for large-scale monitoring. Sex identification was optimized for faecal samples of jaguars and other felids. We also optimized a set of 11 microsatellite markers for reliable identification of individuals. We estimated the effectiveness of faecal sample genotyping in two distinct Brazilian biomes: the Pantanal and the semi-arid Caatinga. Almost 90% of the samples that were molecularly identified as jaguar (n = 90) were successfully genotyped and were assigned to 30 individuals. Genetic diversity was generally high but was significantly lower in the Caatinga population. We show that non-invasive genetic sampling can be a reliable tool to study population parameters and to monitor the genetic status of jaguar populations in different habitats. It may also be useful for future surveys of jaguars that address ecological, behavioural and conservation issues, and could provide a baseline for non-invasive genetic studies of other wild felid populations.

Information

Type
Papers
Copyright
Copyright © Fauna & Flora International 2014 
Figure 0

Fig. 1 Locations of the Pantanal and Caatinga biomes in Brazil.

Figure 1

Table 1 Summary of non-invasive genetic analysis of faeces from the Caiman Ecological Reserve, in the Pantanal, south-western Brazil, and the Serra da Capivara National Park, in the Caatinga, north-eastern Brazil (Fig. 1).

Figure 2

Fig. 2 (a) Distribution of genotypic differences (mismatches or difference in number of loci) between captured individuals from the Pantanal (CAPT) and field-collected faeces from the Pantanal (considering all consensus genotypes, PAN-ALLCONS, n = 23 and only unique genotypes, PAN-INDCONS, n = 14), and (b) the Caatinga (all consensus genotypes, CAP-ALLCONS, n = 43 and unique genotypes, CAP-INDCONS, n = 16) biomes of Brazil. Expected probability distributions of locus differences between genotypes are shown for three different relationship scenarios: parent-offspring (EXP-PO), full siblings (EXP-FS) and unrelated (EXP-UNREL).

Supplementary material: PDF

Roques Supplementary Material

Roques Supplementary Material

Download Roques Supplementary Material(PDF)
PDF 172.2 KB