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The authors report on ancient DNA data from two human skeletons buried within the chancel of the 1608–1616 church at the North American colonial settlement of Jamestown, Virginia. Available archaeological, osteological and documentary evidence suggest that these individuals are Sir Ferdinando Wenman and Captain William West, kinsmen of the colony's first Governor, Thomas West, Third Baron De La Warr. Genomic analyses of the skeletons identify unexpected maternal relatedness as both carried the mitochondrial haplogroup H10e. In this unusual case, aDNA prompted further historical research that led to the discovery of illegitimacy in the West family, an aspect of identity omitted, likely intentionally, from genealogical records.
We identify a set of essential recent advances in climate change research with high policy relevance, across natural and social sciences: (1) looming inevitability and implications of overshooting the 1.5°C warming limit, (2) urgent need for a rapid and managed fossil fuel phase-out, (3) challenges for scaling carbon dioxide removal, (4) uncertainties regarding the future contribution of natural carbon sinks, (5) intertwinedness of the crises of biodiversity loss and climate change, (6) compound events, (7) mountain glacier loss, (8) human immobility in the face of climate risks, (9) adaptation justice, and (10) just transitions in food systems.
Technical summary
The Intergovernmental Panel on Climate Change Assessment Reports provides the scientific foundation for international climate negotiations and constitutes an unmatched resource for researchers. However, the assessment cycles take multiple years. As a contribution to cross- and interdisciplinary understanding of climate change across diverse research communities, we have streamlined an annual process to identify and synthesize significant research advances. We collected input from experts on various fields using an online questionnaire and prioritized a set of 10 key research insights with high policy relevance. This year, we focus on: (1) the looming overshoot of the 1.5°C warming limit, (2) the urgency of fossil fuel phase-out, (3) challenges to scale-up carbon dioxide removal, (4) uncertainties regarding future natural carbon sinks, (5) the need for joint governance of biodiversity loss and climate change, (6) advances in understanding compound events, (7) accelerated mountain glacier loss, (8) human immobility amidst climate risks, (9) adaptation justice, and (10) just transitions in food systems. We present a succinct account of these insights, reflect on their policy implications, and offer an integrated set of policy-relevant messages. This science synthesis and science communication effort is also the basis for a policy report contributing to elevate climate science every year in time for the United Nations Climate Change Conference.
Social media summary
We highlight recent and policy-relevant advances in climate change research – with input from more than 200 experts.
Campeche, one of the Spanish Empire's main Mexican ports, was a place where previously distinct cultures and populations intermingled during the colonial era (AD 1540–1680). Investigation of the town's central plaza revealed a Hispanic cemetery of multi-ethnic burials. The authors combine previous analyses with newly generated genome-wide data from 10 individuals to trace detailed life histories of the mostly young, local Indigenous Americans and first-generation European and African immigrants, none of whom show evidence of genetic admixture. These results provide insights into the individual lives and social divides of the town's founder communities and demonstrate how ancient DNA analyses can contribute to understanding early colonial encounters.
To compare the efficacy of bone pâté versus bioactive glass in mastoid obliteration.
Method
This randomised parallel groups study was conducted at a tertiary care centre between September 2017 and August 2019. Sixty-eight patients, 33 males and 35 females, aged 12–56 years, randomly underwent single-stage canal wall down mastoidectomy with mastoid obliteration using either bone pâté (n = 35) or bioactive glass (n = 33), and were evaluated 12 months after the operation.
Results
A dry epithelised cavity (Merchant's grade 0 or 1) was achieved in 65 patients (95.59 per cent). Three patients (4.41 per cent) showed recidivism. The mean air–bone gap decreased to 16.80 ± 4.23 dB from 35.10 ± 5.21 dB pre-operatively. The mean Glasgow Benefit Inventory score was 30.02 ± 8.23. There was no significant difference between the two groups in these outcomes. However, the duration of surgery was shorter in the bioactive glass group (156.87 ± 7.83 vs 162.28 ± 8.74 minutes; p = 0.01).
Perim Island is an eroded fragment of the southwest flank of a late Miocene (10.5 ± 1.0 Ma) volcano whose centre lay on the southwesternmost tip of Arabia. The volcano is the westernmost of the E–W line of six central vent volcanoes (the Aden Line) that extends 200 km along the south coast of Arabia from Perim to Aden. Major oxide and trace element abundances are given for 35 Perim specimens and these show that the volcano has within-plate trace element characteristics and consists of a petrographically and geochemically simple suite of alumina-poor olivine basalts, andesites, and transitional andesite–trachyandesites. Six specimens, however, are markedly enriched in Al2O3 and CaO, and contain abundant (20–30 mode %) highly calcic (An77–83) plagioclase phenocrysts. Geochemical modelling suggests that the main Perim volcanic sequence was produced by the fractional crystallization (o1 + cpx + Ti-mt + plag) of a silica saturated (SiO2 c. 45%) basic melt. The high A1, high Ca, magmas appear to be mixing products of plagioclase-enriched basic magmas with more evolved melts. Perim is the oldest volcano of the Aden line, which becomes increasingly younger and alkalic eastward. It is suggested that the volcanism is related to an eastwards-propagating rift produced before the most recent stage of sea-floor spreading in the Gulf of Aden (4.5 Ma–present).
To estimate the consequences of failure of initial antibiotic therapy for patients with complicated skin and skin-structure infections.
Design.
Retrospective cohort study.
Setting.
Large US multihospital database.
Patients.
We identified a total of 47,219 patients (age 18 years or older) who were admitted to the hospital for complicated skin and skin-structure infections from April 1, 2003, through March 31, 2004, and who received intravenous antibiotics during the first 2 hospital-days (ie, initial antibiotic therapy). Failure of therapy was defined as drainage, debridement, or receipt of other intravenous antibiotics at any subsequent time (except for changes to narrower-spectrum agents or any therapy change immediately before discharge). Predictors of failure of antibiotic therapy and mortality were examined using multivariate logistic regression. Analysis of covariance was used to estimate the impact of treatment failure on duration of intravenous antibiotic therapy, length of stay, and total inpatient charges.
Results.
For 10,782 admitted patients (22.8%), there was evidence of failure of initial antibiotic therapy. In multivariate analyses, treatment failure was associated with receipt of vasoactive medications during the first 2 hospital-days (odds ratio [OR], 1.66 [95% confidence interval {CI}, 1.19-2.31]), initiation of antibiotic therapy in the intensive care unit (OR, 1.53 [95% CI, 1.28-1.84]), and the patient's Charlson comorbidity index (OR per 1-point increase, 1.06 [95% CI, 1.04-1.08]); treatment failure was also was associated with a 3-fold increase in mortality (OR, 2.91 [95% CI, 2.34-3.62]). Compared with patients for whom initial treatment was successful, patients who experienced treatment failure received intravenous antibiotic therapy for a mean of 5.7 additional days, were hospitalized for a mean of 5.4 additional days, and incurred a mean of $5,285 (in 2003 dollars) in additional inpatient charges (all P <.01).
Conclusion.
Failure of initial antibiotic therapy in the treatment of complicated skin and skin-structure infections is associated with significantly worse clinical and economic outcomes.
Edited by
Kim-Anh Do, University of Texas, MD Anderson Cancer Center,Peter Müller, Swiss Federal Institute of Technology, Zürich,Marina Vannucci, Rice University, Houston
DNA microarray technology enables us to monitor the expression levels of thousands of genes simultaneously, and hence helps to obtain a better picture of the interactions between the genes. In order to understand the biological structure underlying these gene interactions, we present here a statistical approach to model the functional relationship between genes and also between genes and disease status. We suggest a hierarchical Bayesian model based on multivariate adaptive regression splines (MARS) to model these complex nonlinear interaction functions. The novelty of the approach lies in the fact that we attempt to capture the complex nonlinear dependencies between the genes which otherwise would have been missed by linear approaches. Owing to the large number of genes (variables) and the complexity of the data, we use Markov Chain Monte Carlo (MCMC) based stochastic search algorithms to choose among models. The Bayesian model is flexible enough to identify significant genes as well as model the functional relationships between them. The effectiveness of the proposed methodology is illustrated using two publicly available microarray data sets: leukemia and hereditary breast cancer.
Introduction
DNA microarray technology has revolutionized biological and medical research. The use of DNA microarrays allows simultaneous monitoring of the expressions of thousands of genes (Schena et al. 1995; Duggan et al. 1999), and has emerged as a tool for disease diagnosis. This technology promises to monitor the whole genome on a single chip so that researchers can have a better picture of the interactions among thousands of genes simultaneously.
A synthetic route is presented for the preparation of a gold film in the presence of UV-radiation. Methoxypolyethylene glycol, a water-soluble polymer, was used as the reducing agent of gold ions in the presence of an ultra-violet source, and gold nanoparticles resulted. During stirring, a centrifugal force is generated at the center of the solution (at the point where the meniscus is at its lowest level with respect to the vertical orthogonal). At this point, the nanoparticles coalesce and form a self-assembly of smaller subunits that ultimately forms a film like network.
This is a sociobiological approach to depression using hierarchy and its hypothesised relevance to self-esteem in the marsupial sugar glider (Petaurus breviceps).
Method
Differential access to resources between the dominant and submissive animal is measured by observation in four stable colonies. The dominant animals from two of these colonies are then introduced into the other two, resulting in the transferred former dominants becoming subordinate. Behavioural and biochemical measures relevant to depression and involving access to resources are then repeated. These measures include eating, drinking, social and sexual access, motility, grooming and biochemical estimates of cortisol and testosterone.
Results
Subordinate animals have significantly less access to resources, both in the stable colony and when the formerly dominant animals become subordinate.
Conclusions
A sociobiological approach using a hierarchy model equating resource-holding potential with self-esteem, exemplified by this study, may provide new concepts and insights into the phenomenology and pathophysiology of depression. It allows comparisons to be made between animal behaviour and cognition: the lack of such has been a major difficulty in animal studies hitherto. The findings are possibly more relevant to dysthymia than to affective disorder and imply a relationship between low resource-holding potential in sub-human animals as a phylogenetic antecedent of some of the cognitive and affective aspects of depression in man.
1. Caloreen, a glucose-polymer dextrin infused into human volunteers, although producing a clear increase in total plasma carbohydrate did not produce a satisfactory increase in plasma glucose levels or serum insulin levels.
2. Urinary losses were high and although small fragments of the dextrin (suggesting metabolic breakdown of the dextrin) were demonstrated in the urine, no suppression of plasma free fatty acid, glucagon or immediate increase in the respiratory quotient were noted, suggesting that the metabolism is too slow to make it useful for parenteral nutrition in its present form.
3. A dextrin with fewer branch-links might be more suitable.
An unusual occurrence of adularia as a porphyroblastic mineral in an Upper Pre-Cambrian marble from Zambia is described, and optical and chemical data given. The presence of good cleavages oblique to the crystal faces indicates that the latter are hemi-orthodomes and high index pyramids, although the crystals are of simple form.
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