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Objectives/Goals: Identifying and indexing rare disease studies is labor intensive, especially in research centers with a large number of trials. To address this gap, we applied natural language processing (NLP) and visualization techniques to develop an efficient pipeline and user-friendly web interface. Our goal is to offer the rare disease study identification (RDSI) tool for adoption by other sites. Methods/Study Population: The RDSI retrieves study information (short and long titles, study abstract) from the IRB system. These descriptive fields are then processed by the MetaMap Lite NLP program for identifying disease terms and standardizing them to UMLS concepts. By terminology identifier mapping, the diseases intersecting with concepts in rare disease databases (Genetic and Rare Disease program and Orphanet) are further scored to pinpoint studies that focus on a rare disease. The web interface displays a scatter bubble chart as an overview of all the rare diseases, with each bubble size proportional to the number of studies for that disease. In addition to the visual navigation, users can search studies by disease name, PI, or IRB number. Search results contain detailed study information as well as the evidence used by algorithms of the pipeline. Results/Anticipated Results: The RDSI identification results and functions were verified manually and spot-checked by several study investigators. The web interface is a self-contained solution available to our staff for various use cases like reporting or environment scan. We have built in a versioning mechanism that logs the date of each major result in the process. Therefore, even as the rare disease data sources evolve over time, we will be able to preserve any historical context or perform updates as needed. The RDSI outputs are replicated to Mayo Clinic’s enterprise data warehouse daily, allowing tech-savvy users to leverage any useful intermediate results at the backend. We anticipate the performance of the rare disease identification to be further enhanced by employing the advancements in AI technology. Discussion/Significance of Impact: The RDSI represents an informatics solution that offers efficiency in identifying and navigating rare disease clinical studies. It features the use of public databases and open-source tools, manifesting return on investment from the broad translational science ecosystem. These considerations are informative and adoptable by other institutions.
Supraglacial lakes (SGLs) are widespread across the Greenland ice sheet and cause transient changes in ice flow. Here, we produce the first annual ice-sheet wide database of maximum summer SGL extents spanning 1985 to 2023 using all July and August Landsat images. Lake visibility percentages were calculated to estimate the uncertainty induced by variable image data coverage. SGLs were mainly distributed between 1000 and 1600 m elevation, with large lake area observed in northwestern, northeastern and southwestern basins. Lake area increased at a rate of 50.5 km2 a−1 across the entire Greenland, and lakes advanced to higher elevations at an average rate of 10.2 m a−1 during 1985–2023. We leveraged spatiotemporally matched ICESat-2 and Landsat 8 reflectance data to develop a deep learning model for lake depth inversion for the period 2014–23. This model demonstrates the highest accuracy among all image-based methods, albeit with an underestimation of ~15% when compared to ICESat-2 data. A significant positive correlation between lake volume and area is used to up-scale the approach to the entire time period, indicating a lake volume increase of 221.9 ± 63.6 × 106 m3 a−1. Increasing air/land surface temperature, surface pressure and decreasing snowfall were the most important contributing factors in driving lake variability.
Multiple proposals suggest that xenophobia increases when infectious disease threats are salient. The current longitudinal study tested this hypothesis by examining whether and how anti-immigrant sentiments varied in the Netherlands across four time points during the COVID-19 pandemic (May 2020, February 2021, October 2021 and June 2022 through Flycatcher.eu). The results revealed that (1) anti-immigrant sentiments were no higher in early assessments, when COVID-19 hospitalizations and deaths were high, than in later assessments, when COVID-19 hospitalizations were low, and (2) within-person changes in explicit disease concerns and disgust sensitivity did not relate to anti-immigrant sentiments, although stable individual differences in disgust sensitivity did. These findings suggest that anecdotal accounts of increased xenophobia during the pandemic did not generalize to the population sampled from here. They also suggest that not all increases in ecological pathogen threats and disease salience increase xenophobia.
Glauconite pellets of vermiform and lobate morphology occur together in Eocene geologic formations in Maryland. Morphologically, the vermiform pellets appear to be identical to those that have previously been called “altered biotite”. In thin sections these pellets do show a well-defined micaceous morphology with the layers running across the worm-like pellets. Some zones in these pellets appear to be “crystals” that are up to 30 × 70 μ and nearly rectangular in cross section. However, there are tiny cracks along cleavage planes within these “crystals”. Externally, the lobate pellets have many rounded lobes and are similar to one of the shapes that Burst has called free-form. In thin section under crossed nicols these pellets have a grainy appearance, indicating that the lobate pellets are composed of many small zones, each about 5–20 μ across. Within these zones the mineral glau-conite has a single orientation, but the zones are not lined up with each other to give the gross micaceous appearance that is associated with the vermiform pellets.
Random powder X-ray diffraction patterns (prepared with a large 114·59mm Norelco powder camera) of individual vermiform and lobate pellets are nearly identical. Eight vermiform and 9 lobate pellets gave the same mean 001 (10·2 Å) and 060 (1·518 Å) spacings. The patterns from both kinds of pellets are similar, except for the absence of some weak lines, to Warshaw’s (ASTM) pattern for glauconite. The patterns have lines indicating a 1 M polytype, however, hkl lines with k ≠ 3n are broad indicating some disorder. In addition to X-ray diffraction patterns, the K2O content (6·7 per cent) and CEC (29 me/100 g as Ca replaced by Mg) of the pellets indicate that interstratified expanded layers may be the main source of the disorder.
If the vermiform pellets are altered mica, the alteration has been sufficient to give a product that is definitely identified as glauconite by X-ray methods. The possibility of mica alteration is suggested by the geographic nearness of the Piedmont (a mica source area) and the occurrence of Piedmont-type quartz with the glauconite pellets. Alternatively, the vermiform pellets may form during glauconite crystallization or recrystallization processes. The probability that both kinds of pellets obtained their morphology before or during, rather than after, the time they became glauconite (mineralogically) suggests that the proper environment may form glauconite from a variety of starting materials.
Glauconite from the oxidized and reduced zones of soil-geologic columns at two Coastal Plain sites, one in Maryland and one in New Jersey, was examined by Mössbauer spectroscopy. The data indicate that glauconite in the reduced zones had a higher proportion of its structural iron in the ferrous, as opposed to the ferric state. The Fe2+/Fe3+ ratio ranged from 0 to 0.2 for the glauconite from the oxidized zone and was about 0.35 for the glauconite in the reduced zones. Despite the presence of pyrite in the reduced zone, which might be expected to make ferric iron unstable because of the presence of sulfide S, about 75% of the Fe in the glauconite in the reduced zone was in the ferric state. Thin section analysis showed some glauconite in the reduced zones to be intimately associated with pyrite and some aggregates of fine pyrite crystals were locally present in cracks in glauconite pellets. In the oxidized zones, pyrite was absent and the glauconite was more yellow under plane-polarized light, as opposed to more green for the glauconite in the reduced zones. These data indicate that reports of studies of glauconite should stipulate whether samples are from the oxidized or reduced zone of soil-geologic columns.
A kaolinite-rich bed (tonstein) and an associated bentonite in the upper part of Yegua Formation at College Station, east-central Texas, were formed by in situ weathering processes in a late Eocene swamp. X-ray powder diffraction, infrared spectroscopy, petrographic studies, and scanning and transmission electron microscopy not only show that dioctahedral smectite and coarsely crystalline kaolinite are the dominant minerals in the bentonite and tonstein, respectively, but that cryptocrystalline halloysite and kaolinite are localized along the weathering front (transitional zone) between the tonstein and the bentonite. As weathering progressed, the cryptocrystalline minerals gradually recrystallized to yield the coarse books and vermicular growths of kaolinite characteristic of the tonstein.
Small amounts of cristobalite, sanidine, and euhedral zircon crystals with liquid or gaseous inclusions accord with the formation of the bentonite by alteration of volcanic ash. Clinoptilolite in the lignitic layer and sandstone below the bentonite probably formed from ions that were released during alteration of the volcanic materials to smectite, but clinoptilolite in the tonstein and overlying strata appear to have formed after kaolinization of the bentonite.
Mild traumatic brain injury (mTBI) is common in children. Long-term cognitive and behavioral outcomes as well as underlying structural brain alterations following pediatric mTBI have yet to be determined. In addition, the effect of age-at-injury on long-term outcomes is largely unknown.
Methods
Children with a history of mTBI (n = 406; Mage = 10 years, SDage = 0.63 years) who participated in the Adolescent Brain Cognitive Development (ABCD) study were matched (1:2 ratio) with typically developing children (TDC; n = 812) and orthopedic injury (OI) controls (n = 812). Task-based executive functioning, parent-rated executive functioning and emotion-regulation, and self-reported impulsivity were assessed cross-sectionally. Regression models were used to examine the effect of mTBI on these domains. The effect of age-at-injury was assessed by comparing children with their first mTBI at either 0-3, 4-7, or 8-10 years to the respective matched TDC controls. Fractional anisotropy (FA) and mean diffusivity (MD), both MRI-based measures of white matter microstructure, were compared between children with mTBI and controls.
Results
Children with a history of mTBI displayed higher parent-rated executive dysfunction, higher impulsivity, and poorer self-regulation compared to both control groups. At closer investigation, these differences to TDC were only present in one respective age-at-injury group. No alterations were found in task-based executive functioning or white matter microstructure.
Conclusions
Findings suggest that everyday executive function, impulsivity, and emotion-regulation are affected years after pediatric mTBI. Outcomes were specific to the age at which the injury occurred, suggesting that functioning is differently affected by pediatric mTBI during vulnerable periods. Groups did not differ in white matter microstructure.
The Stricker Learning Span (SLS) is a computer-adaptive word list memory test specifically designed for remote assessment and self-administration on a web-based multi-device platform (Mayo Test Drive). Given recent evidence suggesting the prominence of learning impairment in preclinical Alzheimer’s disease (AD), the SLS places greater emphasis on learning than delayed memory compared to traditional word list memory tests (see Stricker et al., Neuropsychology in press for review and test details). The primary study aim was to establish criterion validity of the SLS by comparing the ability of the remotely-administered SLS and inperson administered Rey Auditory Verbal Learning Test (AVLT) to differentiate biomarkerdefined groups in cognitively unimpaired (CU) individuals on the Alzheimer’s continuum.
Participants and Methods:
Mayo Clinic Study of Aging CU participants (N=319; mean age=71, SD=11; mean education=16, SD=2; 47% female) completed a brief remote cognitive assessment (∼0.5 months from in-person visit). Brain amyloid and brain tau PET scans were available within 3 years. Overlapping groups were formed for 1) those on the Alzheimer’s disease (AD) continuum (A+, n=110) or not (A-, n=209), and for 2) those with biological AD (A+T+, n=43) vs no evidence of AD pathology (A-T-, n=181). Primary neuropsychological outcome variables were sum of trials for both the SLS and AVLT. Secondary outcome variables examined comparability of learning (1-5 total) and delay performances. Linear model ANOVAs were used to investigate biomarker subgroup differences and Hedge’s G effect sizes were derived, with and without adjusting for demographic variables (age, education, sex).
Results:
Both SLS and AVLT performances were worse in the biomarker positive relative to biomarker negative groups (unadjusted p’s<.05). Because biomarker positive groups were significantly older than biomarker negative groups, group differences were attenuated after adjusting for demographic variables, but SLS remained significant for A+ vs A- and for A+T+ vs A-T- comparisons (adjusted p’s<.05) and AVLT approached significance (p’s .05-.10). The effect sizes for the SLS were slightly better (qualitatively, no statistical comparison) for separating biomarker-defined CU groups in comparison to AVLT. For A+ vs A- and A+T+ vs A-T- comparisons, unadjusted effect sizes for SLS were -0.53 and -0.81 and for AVLT were -0.47 and -0.61, respectively; adjusted effect sizes for SLS were -0.25 and -0.42 and for AVLT were -0.19 and -0.26, respectively. In secondary analyses, learning and delay variables were similar in terms of ability to separate biomarker groups. For example, unadjusted effect sizes for SLS learning (-.80) was similar to SLS delay (.76), and AVLT learning (-.58) was similar to AVLT 30-minute delay (-.55) for the A+T+ vs AT- comparison.
Conclusions:
Remotely administered SLS performed similarly to the in-person-administered AVLT in its ability to separate biomarker-defined groups in CU individuals, providing evidence of criterion validity. The SLS showed significantly worse performance in A+ and A+T+ groups (relative to A- and A-T-groups) in this CU sample after demographic adjustment, suggesting potential sensitivity to detecting transitional cognitive decline in preclinical AD. Measures emphasizing learning should be given equal consideration as measures of delayed memory in AD-focused studies, particularly in the preclinical phase.
Mayo Test Drive (MTD): Test Development through Rapid Iteration, Validation and Expansion, is a web-based multi-device (smartphone, tablet, personal computer) platform optimized for remote self-administered cognitive assessment that includes a computer-adaptive word list memory test (Stricker Learning Span; SLS; Stricker et al., 2022; Stricker et al., in press) and a measure of processing speed (Symbols Test: Wilks et al., 2021). Study aims were to determine criterion validity of MTD by comparing the ability of the MTD raw composite and in-person administered cognitive measures to differentiate biomarkerdefined groups in cognitively unimpaired (CU) individuals on the Alzheimer’s continuum.
Participants and Methods:
Mayo Clinic Study of Aging CU participants (N=319; mean age=71, SD=11, range=37-94; mean education=16, SD=2, range=6-20; 47% female) completed a brief remote cognitive assessment (∼0.5 months from in-person visit). Brain amyloid and brain tau PET scans were available within 3 years. Overlapping groups were formed for 1) those on the Alzheimer’s disease (AD) continuum (A+, n=110) or not (A-, n=209), and for 2) those with biological AD (A+T+, n=43) or with no evidence of AD pathology (A-T-, n=181). Primary outcome variables were MTD raw composite (SLS sum of trials + an accuracy-weighted Symbols response time measure), Global-z (average of 9 in-person neuropsychological measures) and an in-person screening measure (Kokmen Short Test of Mental Status, STMS; which is like the MMSE). Linear model ANOVAs were used to investigate biomarker subgroup differences and Hedge’s G effect sizes were derived, with and without adjusting for demographic variables (age, education, sex).
Results:
Remotely administered MTD raw composite showed comparable to slightly larger effect sizes compared to Global-z. Unadjusted effect sizes for MTD raw composite for differentiating A+ vs. A- and A+T+ vs. A-T- groups, respectively, were -0.57 and -0.84 and effect sizes for Global-z were -0.54 and -0.73 (all p’s<.05). Because biomarker positive groups were significantly older than biomarker negative groups, group differences were attenuated after adjusting for demographic variables, but MTD raw composite remained significant for A+T+ vs A-T- (adjusted effect size -0.35, p=.007); Global-z did not reach significance for A+T+ vs A-T- (adjusted effect size -0.19, p=.08). Neither composite reached significance for adjusted analyses for the A+ vs A- comparison (MTD raw composite adjusted effect size= -.22, p=.06; Global-z adjusted effect size= -.08, p=.47). Results were the same for an alternative MTD composite using traditional z-score averaging methods, but the raw score method is preferred for comparability to other screening measures. The STMS screening measure did not differentiate biomarker groups in any analyses (unadjusted and adjusted p’s>.05; d’s -0.23 to 0.05).
Conclusions:
Remotely administered MTD raw composite shows at least similar ability to separate biomarker-defined groups in CU individuals as a Global-z for person-administered measures within a neuropsychological battery, providing evidence of criterion validity. Both the MTD raw composite and Global-z showed greater ability to separate biomarker positive from negative CU groups compared to a typical screening measure (STMS) that was unable to differentiate these groups. MTD may be useful as a screening measure to aid early detection of Alzheimer’s pathological changes.
Machine vision has been extensively researched in the field of unmanned aerial vehicles (UAV) recently. However, the ability of Sense and Avoid (SAA) largely limited by environmental visibility, which brings hazards to flight safety in low illumination or nighttime conditions. In order to solve this critical problem, an approach of image enhancement is proposed in this paper to improve image qualities in low illumination conditions. Considering the complementarity of visible and infrared images, a visible and infrared image fusion method based on convolutional sparse representation (CSR) is a promising solution to improve the SAA ability of UAVs. Firstly, the source image is decomposed into a texture layer and structure layer since infrared images are good at characterising structural information, and visible images have richer texture information. Both the structure and the texture layers are transformed into the sparse convolutional domain through the CSR mechanism, and then CSR coefficient mapping are fused via activity level assessment. Finally, the image is synthesised through the reconstruction results of the fusion texture and structure layers. In the experimental simulation section, a series of visible and infrared registered images including aerial targets are adopted to evaluate the proposed algorithm. Experimental results demonstrates that the proposed method increases image qualities in low illumination conditions effectively and can enhance the object details, which has better performance than traditional methods.
The Stricker Learning Span (SLS) is a computer-adaptive digital word list memory test specifically designed for remote assessment and self-administration on a web-based multi-device platform (Mayo Test Drive). We aimed to establish criterion validity of the SLS by comparing its ability to differentiate biomarker-defined groups to the person-administered Rey’s Auditory Verbal Learning Test (AVLT).
Method:
Participants (N = 353; mean age = 71, SD = 11; 93% cognitively unimpaired [CU]) completed the AVLT during an in-person visit, the SLS remotely (within 3 months) and had brain amyloid and tau PET scans available (within 3 years). Overlapping groups were formed for 1) those on the Alzheimer’s disease (AD) continuum (amyloid PET positive, A+, n = 125) or not (A-, n = 228), and those with biological AD (amyloid and tau PET positive, A+T+, n = 55) vs no evidence of AD pathology (A−T−, n = 195). Analyses were repeated among CU participants only.
Results:
The SLS and AVLT showed similar ability to differentiate biomarker-defined groups when comparing AUROCs (p’s > .05). In logistic regression models, SLS contributed significantly to predicting biomarker group beyond age, education, and sex, including when limited to CU participants. Medium (A− vs A+) to large (A−T− vs A+T+) unadjusted effect sizes were observed for both SLS and AVLT. Learning and delay variables were similar in terms of ability to separate biomarker groups.
Conclusions:
Remotely administered SLS performed similarly to in-person-administered AVLT in its ability to separate biomarker-defined groups, providing evidence of criterion validity. Results suggest the SLS may be sensitive to detecting subtle objective cognitive decline in preclinical AD.
The gibbons (family Hylobatidae) represent one of world’s most threatened group of taxa. In theory they are an attractive group for interdisciplinary research but are often unconsciously overlooked. We conducted a systematic review in Web of Science and Google Scholar between January 1900 and February 2020 using PRISMA guidelines and strict search criteria to investigate (1) the number of mixed-method biosocial studies published on gibbons; (2) focus species and countries; (3) social analytical approaches used; and (4) the success of this approach in elucidating conservation issues. Only 31 mixed-method biosocial studies have been published on gibbons, 56 per cent on Nomascus species but none on Symphalangus. China and Vietnam were the most popular study locations. Optimistically, 68 per cent of publications were led by gibbon-range country researchers, but only 48 per cent of studies represented international collaborations; 81 per cent of studies addressed a conservation-related topic, highlighting the potential efficacy of using this approach in primate conservation research. However, few studies provided details of data collection methods, methods of analysis and sample sizes, and only one study used an anthropological analytical approach. We therefore encourage further cross-disciplinary international collaborations to better our understanding of human–gibbon relations on a deeper, more contextual level.
Gibbons and siamangs (termed ‘gibbons’ hereafter) are members of the family Hylobatidae and are the smallest of the apes, distinguished by their coordinated duets, territorial songs, arm-swinging locomotion and small family group sizes. They are the most speciose of the apes with four extant genera (Hylobates, Hoolock, Symphalangus and Nomascus) distributed across East and Southeast Asia. Of the 20 species, 95 per cent are considered critically endangered or endangered according to the International Union for Conservation of Nature (IUCN) Red List of Threatened Species (Rawson et al., 2011; Fan and Bartlett, 2017; IUCN, 2021).