Scholars of religion today understand that the scientific basis of religious studies lies in the fact that religion is a multifarious historical phenomenon accessible through empirical research, and that this study therefore differs fundamentally from theology premised on the acceptance of supernaturally revealed truths and faith traditions. Meanwhile, it has been broadly believed that theology once occupied the preeminent position in the medieval university, as expressed by the well-known sobriquet “queen of the sciences.” By surveying the early history of the university, this article shows that most medieval universities did not have a theology faculty until the fourteenth century. With the notable exception of Paris and its immediate offspring (Oxford and Cambridge), the relation between theology and the university was far more tangential and temporizing than is generally assumed—a point worth bearing in mind as we consider the question of the secularization of learning, which is said to have taken place since the early modern period.