Ascaridia galli and Heterakis gallinarum, the most prevalent nematodes of chickens, inhabit the small intestine and caeca, respectively, and often co-occur. Current excreta egg count (EEC) methods do not differentiate between their eggs, and although chickens produce two distinct excreta types – intestinal excreta (IE) and caecal excreta (CE) – the distribution of eggs of these species across them remains poorly understood. Forty Hy-Line Brown laying hens (40 weeks, mean body weight (BW) 2·07 ± 0·02 kg), cleared of prior nematode infection and artificially infected with A. galli (n = 20) or H. gallinarum (n = 20) were housed in separate floor pens and monitored for 26 weeks. Assessments included clinical signs, EECs from IE, CE and mixed excreta (ME), and worm recovery from subsets of birds at 8, 14, 20 and 26 weeks. Neither infection resulted in clinical signs, but A. galli slightly reduced BW gain (0·5 g/week/hen) than H. gallinarum (2·8 g/week/hen). Egg detection aligned with worm predilection sites: A. galli eggs were predominantly found in IE, while H. gallinarum eggs were largely confined to CE. In ME samples, egg counts were reduced by 45% relative to IE for A. galli and 60% relative to CE for H. gallinarum. EECs showed a negative but non-significant association with excreta moisture content. Natural re-infection produced a stable adult worm population in both infections. These findings demonstrate that analysing IE and CE separately provides a practical, non-lethal approach for differentiating these infections, while ME appears to have limited diagnostic utility. Further studies should evaluate these patterns across broader conditions and individual variation.

There is evidence that faecal egg counts of Schistosoma mansoni vary considerably from day to day, which results in poor sensitivity of single stool readings. Intra-specimen variation of S. mansoni egg counts may also be considerable, but has previously been considered as the less important component. We quantified the relative contribution of these two sources of variation among 96 schoolchildren from an area in Côte d'Ivoire highly endemic for S. mansoni. Stool specimens were collected over 5 consecutive days, and 5 egg-counts were made in each specimen by the Kato–Katz technique. The point prevalence of the first sample was 42.7% and the cumulative prevalence after the maximum sampling effort was 88.5%. Using generalized linear mixed models we found that the presence of S. mansoni eggs in a stool sample varied much more between days than within specimens, indicating that stool sample examination over multiple days is required for accurate prevalence estimates. However, using the same approach, we found that among infected children intra-specimen variation in egg counts was 4.3 times higher than day-to-day variation. After praziquantel administration, day-to-day variation was more important than before, since most infections were very light and thus likely to be missed altogether by stool examination on a single day. We conclude that diagnostic sensitivity in high transmission areas is maximized by making several stool readings on several days, but examining 1 stool specimen several times can make reasonable estimates of infection intensity.